Academic literature on the topic 'Macropods'

A comparative study of macroscopic and microscopic dimensions of the intestines in five macropod species indicated that the grazing macropods (the red kangaroo, Macropus rufus, and the eastern grey kangaroo, Macropus giganteus) had significantly longer caeca and large intestines than those of the browsing macropods (the swamp wallaby, Wallabia bicolor, and the red-necked pademelon, Thylogale thetis). This trend was not observed in the small intestine. The arid-adapted M. rufus also had a significantly longer large intestine than M. giganteus, which may be a water-conservation feature. Intestinal villi were tall in T. thetis, which consumed a less fibrous diet, whereas the agile wallaby, Macropus agilis, on a highly fibrous diet, had short villi; other macropods, on diets of medium fibre content, had villi of intermediate height. Thus, the size of the hindgut (i.e. caecum and large intestine) may provide an index of the specific feeding habit of a species (browsing or grazing), whilst parameters of the villi of the small intestine may reflect the quality of the animals' current diet.

This paper introduces a series of papers on the ecology, social organisation and behaviour of populations of sympatric macropods (Macropodoidea : Marsupialia) in north-eastern New South Wales. The study site, in the valley of Wallaby Creek, covers partly tree-cleared cattle-grazed pastures and also wet and dry forest communities; 10 species of macropods live there. The valley has a moderately high rainfall (1023 mm per annum), falling predominately in summer, and an equable climate of cool winters and warm summers. Soils derived from sedimentary and basaltic rocks and alluvium support naturally diverse plant associations further diversified by clearing and establishment of pasture and weed species. Macropods favouring open country occupy the pastures, which can also be used by cover-dependent species where pasture abuts forest or remnant patches of cover. Composition of the macropod community has changed since development of the pasture zone. Dingoes, major predators of some of the macropods, are abundant, and all exotic mammals other than cattle are rare. Populations of two of the macropod species are habituated to approach by observers, and close observation, on foot, of undisturbed animals has become our common study technique. A 1-ha grid has been established over 3.7 km2 of the study site to facilitate exact location of animals and observations. The suitability of the macropod populations for this kind of study results from the attitudes of the landholders.

Non-invasive methods have the potential to circumvent problems associated with using more traditional techniques when surveying for rare and elusive species. In this study, non-invasive molecular-based methods have been used to analyse the scats of several species of marsupials. DNA was successfully extracted from scats of the quokka, Setonix brachyurus, and three other macropods (Macropus fuliginosus, M. irma and M. eugenii) sympatric with the quokka and with similar-appearing scats. Partial sequence from the mitochondrial cytochrome b gene from these four species and seven other macropods was used to measure genetic differentiation among them to determine whether the quokka could be unambiguously identified from the scats alone. The results confirm that molecular approaches can be used for macropod species identification using scats as the source material. The approach will have potential survey and management applications, and, more specifically, may lead to more accurate assessment of the quokka's geographic range, leading to implementation of more appropriate management strategies for its conservation.

Macropod Progressive Periodontal Disease (MPPD) is a well-recognised disease that causes high morbidity and mortality in captive macropods worldwide. Epidemiological data on MMPD are limited, although multiple risk factors associated with a captive environment appear to contribute to the development of clinical disease. The identification of risk factors associated with MPPD would assist with the development of preventive management strategies, potentially reducing mortality. Veterinary and husbandry records from eight institutions across Australia and Europe were analysed in a retrospective cohort study (1995 to 2016), examining risk factors for the development of MPPD. A review of records for 2759 macropods found incidence rates (IR) and risk of infection differed between geographic regions and individual institutions. The risk of developing MPPD increased with age, particularly for macropods >10 years (Australia Incidence Rate Ratio (IRR) 7.63, p < 0.001; Europe IRR 7.38, p < 0.001). Prognosis was typically poor, with 62.5% mortality reported for Australian and European regions combined. Practical recommendations to reduce disease risk have been developed, which will assist zoos in providing optimal long-term health management for captive macropods and, subsequently, have a positive impact on both the welfare and conservation of macropods housed in zoos globally.

The extent to which goats and cattle eat equivalent amounts of forage as sheep has been based on their maintenance energy requirements (MERs) relative to a 50kg wether or dry ewe, known as a dry sheep equivalent (DSE). As such, a 50kg goat was considered 1 DSE and a 450kg steer as 7–8 DSE. In comparison, the DSE of macropods has been based on their basal metabolic rate (BMR) or energy expenditure of grazing (EEg) relative to those of sheep, with a 50kg macropod thought to be 0.7 and 0.45 DSE respectively. Based on published energy requirements of goats, macropods and cattle relative to sheep, their DSE values are estimated to be 1.2, 1.0 and 7.6 respectively. However, relative energy requirements may not be the same as relative dry matter intakes (DMIs), due to differences in forage quality, the structure of digestive tracts and selective foraging capabilities. Allometric equations that predict DMI were developed from published liveweights and intakes of sheep, goats, macropods and cattle. Given DMIs when fed high-quality forage, a 50kg goat was 1 DSE, a 50kg macropod was 0.7 DSE and a 450kg steer was 7.6 DSE. Their DMIs were depressed by 35–50% when fed low-quality forage, but a goat remained as 1 DSE, macropods increased to 1.0 DSE and cattle increased to 8.3 DSE. The capacity of macropods to maintain relatively higher DMIs of low-quality forage than sheep is probably due of their faster digesta passage rates and more expandable stomachs. These DMIs of animals provided ad-libitum quantities of similar forages in small pens are likely to differ from their DMIs when selectively grazing heterogeneous rangeland pastures. Under these conditions, sheep select higher-quality diets than cattle, and kangaroos select higher-quality diets than sheep, which increase the relative DMIs of the smaller herbivores. For this reason, a 50kg macropod is likely to be 1 DSE and consume twice as much forage than previously assumed.

Context Feral cats threaten wildlife conservation through a range of direct and indirect effects. However, most studies that have evaluated the impacts of feral cats on species of conservation significance have focussed on direct impacts such as predation; few studies have considered the indirect impacts of cat-borne disease. Toxoplasma gondii, a cat-borne parasite, causes both acute and latent disease in a range of wildlife species, and macropods are particularly susceptible. Kangaroo Island is Australia’s third largest island and supports a high density of feral cats and high seroprevalence of T. gondii in multiple species, relative to the mainland. This suggests that Kangaroo Island has a high environmental contamination with the parasite and a high risk of infection for other species. Aims We aimed to describe T. gondii seroprevalence in culled and road-killed macropods, so as to assess the effects of island versus mainland location, sex, species and behaviour. Methods Macropod sera were tested for T. gondii IgG antibodies using a commercially available modified agglutination test. Key results The seroprevalence of T. gondii in culled western grey kangaroos (Macropus fuliginosus) was significantly higher on the island (20%, 11/54 positive) than on the mainland (0%, 0/61 positive). There was no difference in T. gondii seroprevalence between culled and road-killed (21%, 21/102 positive) kangaroos from the island. The seroprevalence of T. gondii was significantly higher in female (32%, 12/38 positive) than in male (13%, 8/60 positive) kangaroos, but we observed no sex effect in tammar wallabies (Macropus eugenii), and no effect of species. Conclusions The higher T. gondii seroprevalence in insular macropods supports previous reports of higher T. gondii exposure in other Kangaroo Island fauna. The lack of difference in T. gondii seroprevalence between culled and road-killed kangaroos suggests that T. gondii-positive animals are not more vulnerable to road mortality, in contrast to that suggested previously. Implications Our findings suggest greater potential adverse conservation impacts owing to toxoplasmosis on the island than on the mainland. In light of a recent study demonstrating higher cat abundance on the island than on the mainland, the higher observed T. gondii seroprevalence in insular macropods is likely to be a consequence of higher cat density.

The grouping dynamics of the black-striped wallaby (Macropus dorsalis) were investigated using mark–resight techniques at Taunton National Park, in Central Queensland. Individually marked black-striped wallabies were observed in groups of varying size and composition. Marked wallabies were never observed together twice, despite some individuals being seen up to 15 times. Black-striped wallabies on Taunton National Park appeared to form the open-membership grouping structure common to most gregarious macropods. However, black-striped wallabies in the present study were found to be less gregarious than social macropods in previous studies.

Artificial food patches were used to examine whether red bellied-pademelons (Thylogale billiardierii) and Bennett’s wallabies (Macropus rufogriseus rufogriseus) altered their foraging behaviour in an open habitat (a young plantation) in response to distance from cover, used as a surrogate for predation risk. Analyses using the full dataset showed no significant relationship between the amount of food eaten at a station and any of the cover variables. In contrast, regression analyses of the upper bounds dataset indicated that both increased distance from windrow (2.5-m-high stacks of burnt wood) and from nearest cover (windrow or forest at plantation edge) significantly reduced the amount of food consumed at a station. This indicates that distance from cover acts as a constraint on the amount of food eaten. When the feeding-station data were overlayed onto a map of scat densities across the study site, the amount of food eaten was positively related to the density of scats of both red-bellied pademelons and Bennett’s wallabies. Our results demonstrate that these macropods trade-off increased foraging benefits in order to forage closer to protective cover. Furthermore, they represent the first time that artificial food patches, with progressively decreasing reward per search effort, have been used to assess foraging behaviour in macropods. This opens up a wide range of research opportunities aimed at examining macropod foraging, with both ecological and practical applications.

The present essay aims to resolve the question as to why macropod marsupials (e.g. kangaroos and wallabies, hereinafter termed ‘macropods) and horses produce much less methane (CH4) than do ruminants when digesting the same feed. In herbivores, gases produced during fermentation of fibrous feeds do not pose a major problem in regions of the gut that have mechanisms to eliminate them (e.g. eructation in the rumen and flatus in the lower bowel). In contrast, gas pressure build-up in the tubiform forestomach of macropods or in the enlarged tubiform caecum of equids would be potentially damaging. It is hypothesised that, to prevent this problem, evolution has favoured development of controls over gut microbiota that enable enteric gas production (H2 and CH4) to be differently regulated in the forestomach of macropods and the caecum of all three species, from the forestomach of ruminants. The hypothesised regulation depends on interactions between their gut anatomy and host-tissue immune responses that have evolved to modify the species composition of their gut microbiota which, importantly, are mainly in biofilms. Obligatory H2 production during forage fermentation is, thus, captured in CH4 in the ruminant where ruminal gases are readily released by eructation, or in acetate in the macropod forestomach and equid caecum–colon where a build-up in gas pressure could potentially damage these organs. So as to maintain appropriate gut microbiota in different species, it is hypothesised that blind sacs at the cranial end of the haustral anatomy of the macropod forestomach and the equid caecum are sites of release of protobiofilm particles that develop in close association with the mucosal lymphoid tissues. These tissues release immune secretions such as antimicrobial peptides, immunoglobulins, innate lymphoid cells and mucin that eliminate or suppress methanogenic Archaea and support the growth of acetogenic microbiota. The present review draws on microbiological studies of the mammalian gut as well as other microbial environments. Hypotheses are advanced to account for published findings relating to the gut anatomy of herbivores and humans, the kinetics of digesta in ruminants, macropods and equids, and also the composition of biofilm microbiota in the human gut as well as aquatic and other environments where the microbiota exist in biofilms.

Understanding the impacts of roads on wildlife and the natural environment is of increasing importance. Macropods (mostly kangaroos and wallabies) are a diverse and widespread taxon in Australia that has been significantly affected by the presence of roads in various ways. We reviewed the available literature on macropods and roads, assessing 60 scientific journal articles, reports and theses. Studies on road mortalities were the most prevalent (n = 29, with 12 on macropods only), revealing both spatial and temporal patterns in occurrence. Behavioural studies in relation to the road environment are limited (n = 2) yet could help our understanding of patterns of road-kill and other impacts. Some macropod populations are critically affected by the presence of roads (e.g. brush-tailed rock-wallaby, Petrogale penicillata) due to either proportionately high road mortalities and/or population fragmentation, and may face continued decline unless effective road-mitigation measures are implemented. Investigations of various types of road mitigation focussed on wildlife-exclusion fencing and road crossing structures as the most effective option, although the high cost of these measures appears to limit their implementation. Further research into several areas was identified, particularly on species where severe road impacts are likely to result in population declines.

"November 2001".
Thesis (PhD)--Macquarie University, Division of Environmental and Life Sciences, Department of Biological Sciences, 2002.
Bibliography: leaves 136-157.
General introduction -- Molecular markers for comparative and quantitative studies in macropods -- Genetic linkage map construction in the tammar wallaby (M. eugenii) -- Intraspecific variation, sex-biased dispersal and phylogeography of the eastern grey kangaroo (M. giganteus) -- General discussion.
The analysis of DNA using molecular techniques is an important tool for studies of evolutionary relationships, population genetics and genome organisation. The use of molecular markers within marsupials is primarily limited by their availability and success of amplification. Within this study, 77 macropodid type II microsatellite loci and two type I genetic markers were characterised within M. eugenii to evaluate polymorphic levels and cross-species amplification artifacts. Results indicated that 65 microsatellite loci amplified a single locus in M. eugenii with 44 exhibiting high levels of variability. The success of crossspecies amplification of microsatellite loci was inversely proportional to the evolutionary distance between the macropod species. It is revealed that the majority of species within the Macropodidae are capable of using many of the available heterologous microsatellites. When comparing the degree of variability between source-species and M. eugenii, most were significantly higher within source species (P < 0.05). These differences were most likely caused by ascertainment bias in microsatellite selection for both length and purity. -- The production of a marsupial genetic linkage map is perhaps one of the most important objectives in marsupial research. This study used a total of 353 informative meioses and 64 genetic markers to construct a framework genetic linkage map for M. eugenii. Nearly all markers (93.7%) formed a significant linkage (LOD > 3.0) with at least one other marker. More than 70% (828 cM) of the genome had been mapped when compared with chiasmata data. Nine linkage groups were identified, with all but one (LG7; X-linked) allocated to the autosomes. Theses groups ranged in size from 15.7 cM to 176.5 cM, and have an average distance of 16.2 cM between adjacent markers. Of the autosomal linkage groups, LG2 and LG3 were assigned to chromosome 1 and LG4 localised to chromosome 3 based on physical localisation of genes. Significant sex-specific distortions towards reduced female recombination rates were revealed in 22% of comparisons. Positive interference was observed within all the linkage groups analysed. When comparing the X-chromosome data to closely related species it is apparent that it is conserved both in synteny and gene order. -- The investigation of population dynamics of eastern grey kangaroos has been limited to a few ecological studies. The present investigation provides analysis of mtDNA and microsatellite data to infer both historical and contemporary patterns of population structuring and dispersal. The average level of genetic variation across sample locations was exceedingly high (h = 0.95, HE = 0.82), and is one of the highest observed for marsupials. Contrary to ecological studies, both genic and genotypic analyses reveal weak genetic structure of populations where high levels of dispersal may be inferred up to 230 km. The movement of individuals was predominantly male-biased (average N,m = 22.61, average N p = 2.73). However, neither sex showed significant isolation by distance. On a continental scale, there was strong genetic differentiation and phylogeographic distinction between southern (TAS, VIC and NSW) and northern (QLD) Australian populations, indicating a current and / or historical restriction of geneflow. In addition, it is evident that northern populations are historically more recent, and were derived from a small number of southern eastern grey kangaroo founders. Phylogenetic comparisons between M. g. giganteus and M. g. tasmaniensis, indicated that the current taxonomic status of these subspecies should be revised as there was a lack of genetic differentiation between the populations sampled.
Mode of access: World Wide Web.
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The field of ancient DNA (aDNA) involves the isolation and retrieval of trace amounts of degraded DNA from a variety of substrates including fossils, sediments and historical material. The fragmentary nature of aDNA necessitates the use of methods with the ability to capture and amplify short segments of DNA. Collectively aDNA studies have made significant and unique contributions to a wide field of research including conservation, population genetics, taxonomy and phylogeny. The primary aim of this thesis research is to explore the utility of aDNA techniques to study extirpation, extinction and past biodiversity of Australian macropods. Using a combination of historical, Holocene and Pleistocene aged fossils, this research will attempt to investigate what ancient mitochondrial DNA (mtDNA) can add to our knowledge of Australia’s macropods. Traditional aDNA techniques have largely been used to isolate mtDNA from single fossil samples - an example of this approach is shown in Chapter Two where a wellpreserved wallaby fossil bone from Depuch Island (Western Australia) was studied. The ancient mtDNA (cytochrome b and control region) data produced strong phylogenetic signal and shows that the Depuch Island rock-wallaby specimen is most similar to the mainland Petrogale lateralis lateralis. This finding has conservation implications for ongoing rehabilitation and translocation efforts in the Pilbara region. Chapter Three of this thesis also uses mitochondrial aDNA techniques, to explore questions regarding interrelationships and former distribution of a macropod species complex; Bettongia spp. Cytochrome b and control region data retrieved from 88 historical samples, along with ~214 already sequenced samples, place the most recent common ancestor of the brush-tailed bettongs at c. 2.5 Myr. Ancient mtDNA is suggestive of connectivity between what are now highly fragmented populations, a result that has implications for how critically endangered brush-tailed bettongs should be managed. Ancient DNA analyses and DNA sequencing technology have evolved over recent years and during the course of this study. Therefore in keeping up with the latest high-throughput sequencing (HTS) technology, aDNA analyses in ~70 bones and 20 sediment samples excavated from a Late Pleistocene–Holocene cave deposit on Kangaroo Island, South Australia was undertaken. Samples were selected from 15 stratigraphic layers, ranging in age from >20 ka to ~6.8 ka. The successful retrieval of bona fide aDNA sequences, back to at least 20 ka, demonstrates excellent longterm DNA preservation at the site. All unidentified bones that were screened revealed a number of taxa from the assemblage including, Macropus, Onychogalea, Potorous, Bettongia, Dasyurus, Rattus and Notechis. The results from this study add significant value to the late Pleistocene-mid-Holocene paleontological record, detailing the past diversity of flora and fauna on Kangaroo Island. Lastly, Chapter 5 introduces the latest molecular techniques in capturing and enriching highly fragmented aDNA bone from four sites across Australia. Ancient DNA extractions techniques, targeting ultra-short DNA fragments, were employed in an attempt to obtain Pleistocene-aged material. The warm conditions, a factor common in Australian caves, are not conductive to long-term DNA preservation at many sites. Shotgun sequencing was only successful on six bone samples (including one incisor) from a total of 25 samples that were screened. Three samples were successfully captured and enriched for endogenous DNA; one bettong sample generated 89.6% of a mtDNA genome with 5.4X coverage. Overall, the decay rate of DNA and preservation across all four sites was high, and extremely degraded, with an average fragment length between 47 bp and 57 bp. These data demonstrate that recovery of Pleistocene-aged aDNA from warm climate sites across Australia will remain a challenge and that better ways to screen and predict DNA survival are needed. This thesis presents a combination of work from multiple sites across Australia using a range of aDNA techniques and sequencing technologies that have evolved over the tenure of this thesis. Collectively, this body of work has demonstrated the value of integrating aDNA data into modern-day conservation decision-making and has contributed to a wider understanding of Australian macropods both past and present.

Lumpy jaw is a well-recognised cause of morbidity and mortality in captive macropods (Macropodidae) worldwide. The extent and causes of the disease are largely unknown, although multiple risk factors associated with a captive environment are thought to contribute to the development of clinical disease. Identification of risk factors associated with lumpy jaw would assist with the development of preventive management strategies, potentially reducing mortalities. A cross-sectional study was undertaken from 2011 to 2015, to determine prevalence and risk factors for this disease through the distribution of a survey to 527 institutions across Australia and Europe; two regions where macropods are popular exhibits. Veterinary and husbandry records from the period 1st January 1995 up to and including 28th November 2016 (the last date when data were extracted from zoo records) were analysed in a retrospective cohort study, examining risk factors for developing disease and treatments used, over time. Computed tomography was used to examine disease occurrence in wild macropods using skulls from population management culls. The prevalence of lumpy jaw was found to differ between the two regions (p < 0.0002). A review of 6178 records for 2759 macropods housed within eight zoos across the Australian and European regions, found incidence rates and risk of infection differed between geographic regions and individual institutions. Risk of developing lumpy jaw increased with age, particularly for macropods >10 years (Australia IRR 7.63, p < 0.001; Europe IRR 7.38, p < 0.001). Treatment approach varied and prognosis was typically poor with 62.5% mortality for Australian and European regions combined. Lumpy jaw was detected in all captive genera examined, but was absent from the wild populations studied. Geographic region influenced the incidence of lumpy jaw, the risks associated with developing clinical disease, and preferred treatment approach. Despite advances in antibiotic therapy and surgical techniques, treatment of lumpy jaw is largely unrewarding for the individual and should be approached on an individual basis. This research provides new information about this refractory disease and makes practical recommendations to reduce disease risk. This information may assist institutions in providing optimal long-term health management for captive macropods; such efforts having a positive impact on both welfare and conservation, including but not limited to captive breeding and translocation programs.

Understanding the impacts of roads on wildlife and the natural environment is of increasing importance, especially in the context of widespread urbanisation. Macropods (mostly kangaroos and wallabies) are a diverse and widespread taxon in Australia that has been significantly affected by the presence of roads in various ways. Although a moderate volume of research has been conducted on the interactions between macropod species and roads in Australia, this a fraction of the research effort conducted on large mammals in Europe and North America. Research that encompasses a variety of aspects of interactions between roads and macropods (and wildlife in general) is needed to broaden our perspective on impacts and mitigation. Patterns of wallaby road mortality were investigated in a per-urban area of South East Queensland. Wallaby road-kill rates varied greatly; between 0.044 and 0.883 road-kills km-1 month-1 at the road or road section scale. Four wallaby mortality hotspots and several other areas of high mortality density were identified from the kernel density spatial analysis. Percent of commercial vehicle traffic (positively correlated) and distance to water (negatively correlated) were important spatial variables for determining the patterns of red-necked wallaby road-kill. Cumulative rainfall over the previous four weeks and maximum wind gust speed (both negatively correlated) were important temporal variables in determining the patterns of red-necked wallaby road-kill. Too few swamp wallaby road-kills were observed to be analysed.
Thesis (PhD Doctorate)
Doctor of Philosophy (PhD)
Griffith School of Environment
Science, Environment, Engineering and Technology
Full Text

La modélisation des écoulements et du transport dans les milieux poreux est un domaine actif pour, notamment, progresser dans la compréhension du transfert des polluants dans les sols. Les sols présentent fréquemment des hétérogénéités comme des macropores (provoqués par la faune, la flore ou des fissures) et un certain nombre de modèles numériques utilisent les concepts de double ou de multi-perméabilité pour tenir compte de tous les types d’écoulements susceptibles de coexister dans de tels systèmes. Cependant, les modèles classiques semblent sous-estimer l’effet de la macroporosité sur l’écoulement et le transfert préférentiels et restreindre la zone d’écoulement préférentiel au seul volume occupé par la macroporosité. Diverses études expérimentales antérieures à cette thèse ont questionné cette hypothèse. Cette étude se propose de comprendre l’établissement de l’écoulement et du transport préférentiel et en particulier les mécanismes d’échange d’eau et de masse entre un macropore et une matrice poreuse environnante en condition saturée. Pour cela, des traçages de l’eau sont réalisés pour un milieu poreux modèle constitué de billes de verre, traversé par un macropore synthétique et mis en place en colonnes de laboratoire. Elution et transfert dans les colonnes sont caractérisés par suivi de la concentration en sortie et par imagerie par résonance magnétique. Un modèle numérique développé sur la base de la méthode de Boltzmann sur réseau est utilisé pour simuler numériquement des écoulements dans un système macroporé et identifier les mécanismes d’écoulements préférentiels à l’échelle de pores. Les données expérimentales montrent que le transfert du traceur est fortement dépendant du débit d’injection ainsi que du coefficient de diffusion dans l’eau. À fort débit, le transfert semble s’effectuer exclusivement dans le macropore, avec très peu d’échange avec la matrice. Pour des débits plus faibles, la percée présente une inflexion suivie d’un pic. Les images IRM montrent alors un échange significatif de traceur entre le macropore et la matrice poreuse environnante. Les simulations numériques sont utilisées pour calculer le champ de vitesse de l’écoulement dans le système en fonction du débit. Les modélisations numériques montrent que l’écoulement préférentiel est étendu dans la matrice poreuse sur une zone de même dimension que le diamètre moyen des grains indépendamment de la taille du macropore et du débit, dans la gamme de débits simulés. Ces résultats expérimentaux et numériques montrent que l’influence du macropore sur les transferts doit être étendue dans la matrice poreuse sur une zone de la taille des grains pour l’écoulement et sur une zone dépendant du coefficient de diffusion du traceur ainsi que du temps de séjour moyen de celui-ci pour le transfert des solutés
Flow and transport modeling through porous media is of primary concern nowadays, especially in order to progress in the understanding of pollutant transfers through soils. Soils present frequently heterogeneities such as macropores (caused by fauna, flora or cracks) and several numerical models use double or multi permeability concepts in order to take into account all flow types that may exist in such porous systems. Nevertheless, classical models seem underestimate the macropore effect on preferential flow and transport by restricting the preferential flow zone only to the volume occupied by the macroporosity. Various experimental studies prior to this thesis have questioned this hypothesis. This study proposes to understand the establishment of preferential flow and transport and in particular the mechanism of flow and solute exchanges between a synthetic macropore and a surrounding porous matrix in saturated condition. For this purpose, water tracing are realized for a model porous media constituted by glass beads, crossed by a synthetic macropore and implemented in laboratory columns. Breakthrough and transport in columns are characterized by monitoring the concentration at the end of the column by magnetic nuclear resonance. A numerical model developed on the basis of lattice-Boltzmann method is used to simul ate flow in macroporous system and identify preferential flow mechanisms at pore scale. Experimental data show that tracer transport is strongly dependent on injection flow rate and the diffusion coefficient in water. At high flow rate, the transport seems to occur exclusively in the macropore, with very little masse exchange with the porous matrix. At lower flow rates, the breakthrough exhibits an inflexion followed by a peak. The MRI images show a significant mass exchange of tracer between the macropore and the surrounding porous matrix. The numerical simulations are used to calculate the flow field in a porous system as a function of flow rate. They show that preferential flow is extended in porous matrix into a zone of same dimension the mean diameter of beads regardless of macropore size or injected flow rate, in the range of simulated flow rates. These experimental and numerical results show that macropore influence on transport should be extended through the surrounding porous matrix into a zone of the same size of grains diameter for flow and into a zone depending on diffusion coefficient as well as mean residence time of the studied tracer for solute transport

In der vorliegenden Arbeit sollten die in der veterinärmedizinischen Literatur bisher diskutierten Ursachen für LJD bei Makropoden hinsichtlich ihrer tatsächlichen Bedeutung abgeklärt und die Eignung einer formalininaktivierten, bestandsspezifischen Adsorbatvakzine zur Prophylaxe von LJD getestet werden. Da LJD eine parodontale Erkrankung darstellt, wurden auch die für Entstehung einer humanen Parodontitis prädisponierenden Faktoren mit in die Untersuchung einbezogen. Es wurden Tupferproben zur bakteriologischen Untersuchung von insgesamt 15 gesunden und 11 an LJD erkrankten Kängurus entnommen. Dabei konnten gramnegative Anaerobier bei allen Tieren isoliert werden. Fusobacterium nucleatum wurde in 82% der von an LJD erkrankten und nur in 33% der von gesunden Tieren entnommenen Tupferproben nachgewiesen, womit sich ein signifikanter Zusammenhang (P < 0,05) zwischen diesem Erreger und LJD ergab. Weitere überwiegend bei erkrankten Makropoden nachgewiesene Anaerobier stellten Prevotella oris/oralis (bei 73% der LJD-Fälle und bei 40% der gesunden Tiere) sowie Capnocytophaga spp. (45% vs. 13%) dar. Bacteroides spp. und Porphyromonas gingivalis wurden – wenn auch nur mit 3 bzw. 2 Nachweisen – ausschließlich bei kranken Tieren isoliert. Fusobacterium necrophorum wurde jeweils in 27% der Kängurus gefunden und spielte damit in dieser Studie keine Rolle für die Entstehung von LJD. In Übereinstimmung mit der Literatur konnten Moraxella spp. ausschließlich bei gesunden Makropoden isoliert werden. Vertreter dieser Gattung gehören damit offensichtlich zur normalen Maulflora der Kängurus. Für die Zoos in Halle und Leipzig wurde eine formalininaktivierte, bestandsspezifische Adsorbatvakzine gegen die bei einem an LJD erkrankten Känguru des jeweiligen Bestandes isolierten gramnegativen Anaerobier hergestellt. 7 Tiere (2 Rote Riesenkängurus, 5 Bennettwallabies) des Leipziger Zoos und 6 Bennettkängurus des Zoos in Halle wurden geimpft, wobei Auffrischungsimpfungen nach 4 bzw. 8 Wochen und nach 6 bzw. 12 Monaten erfolgten. Die spezifischen AK gegen das Prüfantigen Fusobacterium necrophorum wurden im SLA bestimmt. Es konnte keine Erhöhung der AK-Titer induziert werden und auch die Todesrate infolge von LJD senkte sich während des Untersuchungszeitraumes von 42 Monaten in den beiden Zoos nicht. Die höchsten AK-Level (1:512 bis 1:2048) ließen sich im Serum von natürlich infizierten und letztendlich tödlich erkrankten Bennettwallabies des Zoos in Hoyerswerda feststellen. Der Nachweis von AK-Titern im Serum von nicht geimpften Jungtieren lässt vermuten, dass AK via Kolostrum oder Dottersackplazenta auf die Jungtiere übertragen werden. Die Untersuchungen hinsichtlich der Fütterung zeigten, dass im Zoo Leipzig eine azidotische Stoffwechsellage induziert wurde, was sich bei den Leipziger Bennettkängurus in einem mit 7,53 signifikant niedrigeren Vormagen-pH-Wert im Vergleich zu den Hallenser und Auer Tieren (8,25 und 8,38) offenbarte. Dies schlug sich auch in erhöhten K-, Cholesterol- und -Amylasewerten im Serum der Leipziger Wallabies nieder, womit gezeigt werden konnte, dass sich diese Parameter offenbar auch bei Makropoden zur Diagnostik einer chronischen Azidose eignen. Die Versorgung der Bennettkängurus in Magdeburg und Halle mit Ca und P war zwar nicht ausreichend, spiegelte sich aber nicht in veränderten Blutwerten dieser Mengenelemente wider. Die Aktivität der AP nimmt mit zunehmenden Alter ähnlich wie bei anderen Tierarten ab. Ihre negative Korrelation mit dem Alter der Tiere war dabei hochsignifikant (P < 0,001, r = 0,77 bzw. 0,62). Beim direkten Vergleich gesunder mit an LJD erkrankten Tieren konnte weder eine Störung im Ca/P-Stoffwechsel noch eine Azidose in Verbindung zu LJD gebracht werden. In allen Zoos erfolgte eine Überversorgung mit Vitamin A, wobei die Bedarfswerte für Schaflämmer um das 3,5fache bis 41fache übertroffen wurden. Den Bedarfswerten am nächsten lagen die Versorgungswerte der Bennettkängurus vom TP Aue und der Östlichen Grauen Riesenkängurus vom Zoo Magdeburg, beides Bestände ohne LJD. Die ermittelten Retinolplasmakonzentrationen standen in keiner Beziehung zu den Vitamin-A-Gehalten im Futter, was darauf hindeutet, dass sich Retinolbestimmungen im Blutplasma ebenso wie bei anderen Tierarten nur in extremsten defizitären Situationen zur Einschätzung des Vitamin-A-Status eignen. Ob eine Hypervitaminose A für die Entstehung von LJD tatsächlich eine Rolle spielt, muss in zukünftigen Arbeiten unter Einbeziehung von Retinolesterbestimmungen in der Leber abgeklärt werden. Die Glukosewerte lagen mit 8,57 mmol/l (M. rufus) bzw. 6,51 mmol/l (M. rufogriseus) über den bisher bekannten Werten aus der Literatur. Da die Werte bei an LJD erkrankten Kängurus niedriger waren als bei gesunden Tieren, kann ein Diabetes mellitus als Ursache für LJD ausgeschlossen werden. Weder die Durchsicht von 144 Sektionsprotokollen noch die Bestimmung der Kreatinin- und Harnstoffkonzentration im Serum von an LJD erkrankten Tieren ließen einen Zusammenhang zwischen Erkrankungen der Nieren und LJD erkennen. 30 Tiere verendeten an LJD, wovon 20% auch an den Nieren erkrankt waren. Allerdings wiesen auch 16,7% der anderweitig gestorbenen Kängurus eine Nierenerkrankung auf. Die Serumkonzentrationen von Harnstoff bzw. Kreatinin der an LJD erkrankten Makropoden unterschieden sich nicht von den für die gesunden Roten Riesenkängurus (7,40 mmol bzw. 114 mmol/l) und Bennettwallabies (7,81 mmol/l bzw. 86 mmol/l) ermittelten Werten. Insgesamt 184 Sera von 107 Kängurus wurden auf AK gegen MaHV-1 und MaHV-2 mittels Neutralisationtest geprüft. Während 94,4% bzw. 97,2% der Roten Riesenkängurus serologisch positiv für MaHV-1 bzw. MaHV-2 waren, reagierten von den 71 überprüften Bennettkängurus nur 4 bzw. 3 Tiere positiv. Unter den Wallabies befanden sich auch 21 an LJD erkrankte Tiere, wovon lediglich 2 Tiere gegen MaHV-1 und 1 Tier gegen MaHV-2 eine Serokonversion zeigten. Die AK-Titer der Roten Riesenkängurus ließen keine Unterschiede zwischen gesunden und an LJD leidenden Tieren zu und die entnommenen Serumpaarproben von 5 zum Zeitpunkt der Blutentnahme an LJD leidenden Riesenkängurus zeigten kein einheitliches Verhalten im Sinne einer Serokonversion. Somit ließ sich der Verdacht, dass die Reaktivierung latenter Herpesinfektionen die Ursache für LJD sein könnte, nicht bestätigen. Im Ergebnis der vorliegenden Studie und im Zusammenhang mit den Angaben aus der Literatur stellt sich LJD primär als eine Infektion mit gramnegativen Anaerobiern dar, wovon Fusobacterium nucleatum, Bacteroides spp., Prophyromonas gingivalis und Fusobacterium necrophorum, Biovar A die größte Bedeutung haben dürften. Den Abschluss der Arbeit bilden Empfehlungen für die Haltung von Kängurus in zoologischen Einrichtungen und für die Therapie von LJD. Im Anhang finden sich Röntgenaufnahmen und Photographien von erkrankten und gesunden Makropoden
The aim of this thesis was the investigation of the aetiology of Lumpy Jaw Disease (LJD) in macropods concentrating specifically on the causes of the diseases in current veterinary medicine literature and to evaluate the use of a group-specific Al(OH)3-adjuvanted, formalin-inactivated whole-cell vaccine for the control of LJD in kangaroos kept in zoos. LJD is regarded as periodontal disease, therefore the risk factors for the development of human periodontitis were also included in this study. The oral flora from 15 healthy macropods and 11 animals suffering from LJD was isolated. At least one anaerobic gram-negative bacterial species was found in swabs of each macropod. The occurrence of Fusobacterium nucleatum was associated with LJD (P < 0.05) by detecting this bacterium in 82% of the kangaroos suffering from LJD compared to only in 33% of the healthy animals. Prevotella oris/oralis and Capnocytophaga spp. were also predominantly found in diseased animals in comparison with healthy macropods (73% vs. 40% and 45% vs. 13% respectively). Bacteroides spp. and Porphyromonas gingivalis were isolated in only 3 and 2 kangaroos suffering from LJD, respectively. Contrary to previously published studies about LJD Fusobacterium necrophorum was not associated with LJD, as this anaerobe was detected in only 27% of the diseased as well as healthy macropods. Moraxella spp. seem to be a part of the normal oral flora of macropods and was found exclusively in healthy animals. 11 Red-necked Wallabies (Macropus rufogriseus) and 2 Red Kangaroos (Macropus rufus) were immunized with a group-specific Al(OH)3-adjuvanted, formalin-inactivated whole-cell vaccine containing previously in a kangaroo suffering from LJD isolated gramnegative anaerobs. The kangaroos were re-vaccinated after 1, 2, 6 and 12 months. Blood was collected from each animal at the same time. Antibodies were titrated against Fusobacterium necrophorum in an agglutination assay. The vaccine failed to induce increased levels of antibodies as well as to protect wallabies and kangaroos against LJD. As the highest antibody titres were detected in most severely diseased wallabies kept in the Hoyerswerda zoo, the protective role of the humoral immune response in LJD seems to be doubtful. The finding of detectable levels of antibodies in unvaccinated joeys supports the theory, that there is a transmission of antibodies from the mother to the offspring via colostrum or yolk-sac placenta. The diet of the Red-necked Wallabies in one zoo has induced an acidosis: The pH of the forestomach fluid collected by probang was lower in the animals of this zoo (pH = 7.53) than in the wallabies of two other zoos (pH = 8.25 and 8.38, respectively). Potassium, cholesterol and -amylase were also higher in the blood of the animals of this zoo in comparison to the wallabies of the two other ones, hence these blood values seem to be helpful for the diagnosis of chronic acidosis in macropods. There was a calcium and phosphor deficiency in the nutrition of the wallabies in two zoos, but the blood concentration of both of these minerals was not changed. The activity of the ALP correlated negative with the age of the Bennett`s Wallabies (P < 0.001, r = -.77 and r = -.62 respectively, depending on the instruments). All of the above mentioned blood values showed no differences between healthy and diseased animals and could so far not support the assumption, that an imbalance in Ca and P metabolism or an acidosis are important factors for LJD. The macropods of all investigated zoos were fed on a diet rich in vitamin A ranging from the 3.5 to the 41fold requirement for lambs. The vitamin A content of the diets for the 2 collections without a history of LJD was the lowest in this study. These results raised the point, that a hypervitaminosis A could be a more predisposing factor for LJD than a vitamin A deficiency. Due to the fact the plasma retinol concentration was independent from the vitamin A content of the diet and so not helpful in diagnosis of a vitamin A deficiency or toxicity, further investigations regarding the role of vitamin A in the aetiopathogenesis of LJD should include measurements of the liver tissue content of retinol esters. The glucose plasma concentration of the healthy Red Kangaroos (8.57 mmol/l) as well as the Red-necked Wallabies (6.51 mmol/l) was higher than previously published values for macropods, but also higher than the results of the diseased animals in this study. Therefore diabetes mellitus can be ruled out as an underlying factor for LJD. The analysis of 144 pathological records showed, that 30 animals died because of LJD, 20% of them and 16.7% of the other 114 macropods had a concurrent kidney disease. The urea and creatinin concentration in serum samples of healthy animals was not higher than the values of diseased animals. In conclusion, these results suggest kidney diseases are not important for the development of LJD. Altogether 184 sera collected from 107 kangaroos were tested for antibodies against MaHV-1 and MaHV-2 using a neutralisation assay. The prevalence of the MaHV-1- as well as MaHV-2-antibodies was high among the Red Kangaroos (94.4% and 97.2% respectively), but low among the Red-necked Wallabies (5.6% and 4.2% respectively). Seroconversion for MaHV-1 was seen in 2 out of 21 wallabies suffering from LJD, only 1 of these animals also had antibodies against MaHV-2. The antibody-titres against both of the macropodid herpes viruses also did not differ between Red Kangaroos with and without LJD, therefore a reactivation of a latent herpesvirus infection does not appear to be causative for LJD. In summary, considering the results of this study and previously published literature LJD is an infectious disease caused by gramnegative anaerobic bacteria with Fusobacterium nucleatum, Bacteroides spp., Porphyromonas gingivalis and Fusobacterium necrophorum subsp. necrophorum being of most significance. Recommendations concerning the keeping of kangaroos in captivity and the management of LJD are listed in the conclusion of this thesis. Some radiographs and photos of diseased and healthy kangaroos are attached

AbstractThe treatise proposes a model of biological fluid transfer in a dedicated macropore with microporous walls. The distribution of concentrations and velocity studies in the capillary wall for two flow regimes—convective and diffusive. The largest impact on the redistribution of concentration between the capillary volume and its porous wall is made by Darcy number and correlation of diffusion coefficients and concentration expansion. The velocity in the interface vicinity increases with rising pressure in the capillary volume or under decreasing porosity or without consideration of the concentration expansion.

ABSTRACT: It is well known that rock porosity reduces rock Young’s modulus of intact rock specimens. However, it is not well understood how different types and amount of macroporosity in forms of non-connected or isolated cavities (e.g., vesicular basalt, lithophysal tuff) or interconnected vugs (e.g., vuggy limestone) affect rock elastic properties. Such macroporosity leads to challenges in deriving engineering properties of rock. This paper compiles an existing database for porosity and Young’s modulus of macroporous rocks. The database includes Young’s modulus determined from unconfined compression testing on intact rock specimens and analogue specimens used to prepare rock-like test samples and numerical simulations of compression testing on similar materials. The database is used to develop the relationship between porosity and Young’s modulus. In addition to the porosity, the macropore shapes, sizes, locations, and proximity of a macropore to its neighboring macropore play a role in how porosity affects intact rock Young’s modulus. 1. INTRODUCTION Macroporosity, which is the porosity due to visible large voids or cavities, impacts mechanical properties, such as strength and Young’s modulus (E). Examples of such rocks are primarily volcanic (e.g., vesicular basalt, lithophysal tuff, lithophysal rhyolite, pumice, and scoria) and sometimes sedimentary (e.g., vuggy limestone and coquina). Engineering characterization of such rock is challenging due to macroporosity variation within the rock mass, distribution (void-to-void proximity, void alignment), and shape of the macropores (Jespersen et al., 2010; Davis et al., 2017). Preparing test specimens of standard sizes from rock cores or outcrop blocks can be difficult due to macroporosity. Obtaining a representative specimen is also challenging as the size of the macropores becomes too large to prevent large macropores from being sampled. For example, the lithophysal tuffs of Yucca Mountain, Nevada, had macropores ranging in size from approximately 1 to 50 cm, with a maximum size up to 1 m (CRWMS M&O 2000). When laboratory compression tests are carried out on these limited number of specimens, the distribution of data is typically scattered.

Abstract Carbonate reservoirs from the Lower Cretaceous Thamama Group are of major economic interest since they host some of the largest hydrocarbon accumulations in the United Arab Emirates. This study focuses on a Thamama reservoir from the Kharaib Formation and aims at complementing the regional geological understanding through the integration of newly cored and historical wells. The reservoir of interest consists of a thick organic and clay-rich dense zone at its base characterised by mud-supported, discoidal orbitolinid-rich deposits. This interpreted mid-ramp dense succession is overlain by a thick reservoir unit deposited under inner ramp environments, hence describing a large-scale shoaling trend. In detail, the reservoir succession records higher hydrodynamic conditions than the dense unit, as testified by the predominance of grain-supported textures (from packstone to grainstone). Floatstone to rudstone interbeds with grainy matrices are associated with Lithocodium/Bacinella- and rudist-rich accumulations mainly recorded in the lower and upper parts of the reservoir, respectively. A series of depositional cycles of regional significance have been recognised throughout the reservoir succession and are usually bounded by prominent stylolites, correlatable across the field. The reservoir succession is predominantly characterised by micropores, although macropores (especially vugs) also have an important contribution to the pore system. The extent and impact of dissolution is highly variable, but overall, it is responsible for the creation of most macropores (ie. secondary macropores are more abundant than primary macropores). Subsequent to dissolution, the pore system is typically heavily degraded by cementation from non-ferroan calcite cements and, to a lesser extent, by dolomite cements. An emphasis has also been put on recognising the residual hydrocarbon, the abundance of which varies considerably at field scale. To better constrain the vertical and lateral distribution of the reservoir heterogeneities, nineteen layers of interest depicting the main reservoir quality trends have been interpreted. The creation of comprehensive sets of maps – consisting of sedimentological, thickness, diagenetic and hydrocarbon staining maps – for each of these layers allowed a high-resolution understanding of the reservoir architecture. Of interest is the upward increase in reservoir quality reported towards the upper part of the reservoir unit, associated with the development of thick rudist-rich intervals, which favour the development of a macropore-dominated pore system facilitating fluid flow. By contrast, the common presence of stylolites plays a key role in the creation of baffles or barriers throughout the entire reservoir. This integrated approach has allowed a better prediction of flow units at field scale and provided valuable input data for future reservoir modelling.

Drying process directly affect in structure of the silica support for catalysts. Therefore, we herein prepared bimodal meso-macropore structure of silica by sol-gel method and investigated the silica support obtained from various drying techniques, namely, hot air drying (HA), microwave drying(MW)and freeze drying (FD)by means of BET and BJH N2-sorption, and SEM. The results showed a significant effect of drying technique on the textural properties of the dried bimodal porous silica support. In addition, it was found that freeze drying could enhance surface area of silica support with higher than 500 m2/g. Keywords: bimodal meso-macropore structure silica support: drying technology: freeze drying: hot air drying: microwave drying

Water repellency causes unstable wetting fronts that result in water moving in preferential flowpaths through homogeneous soils as well in structured soils where macropores enhance the preferential flow pattern. Water repellency is typically associated with extended water ponding on the soil surface, but we have found that repellency is important even before the water ponds. Preferential flow fingers can form under conditions where the contact angle is less than 90o, but greater than 0o. This means that even when the soil is considered wettable (i.e., immediate penetration of water), water distribution in the soil profile can be significantly non-uniform. Our work concentrated on various aspects of this subject, with an emphasis on visualizing water and colloid flow in soil, characterizing mathematically the important processes that affect water distribution, and defining the chemical components that are important for determining contact angle. Five papers have been published to date from this research, and there are a number of papers in various stages of preparation.