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Journal articles on the topic 'Ligase detection reaction'

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Author: Grafiati

Published: 4 June 2021

Last updated: 20 February 2023

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1

Huh, Yun Suk, Adam J. Lowe, Aaron D. Strickland, Carl A. Batt, and David Erickson. "Surface-Enhanced Raman Scattering Based Ligase Detection Reaction." Journal of the American Chemical Society 131, no. 6 (February 18, 2009): 2208–13. http://dx.doi.org/10.1021/ja807526v.

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2

Zhang, Jing, Hui Zhang, Kun Li, and Ming Shi. "Development of a Polymerase Chain Reaction/Ligase Detection Reaction Assay for Detection of CYP2C19 Polymorphisms." Genetic Testing and Molecular Biomarkers 22, no. 1 (January 2018): 62–73. http://dx.doi.org/10.1089/gtmb.2017.0086.

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3

Khanna, Marilyn, Weiguo Cao, Monib Zirvi, Philip Paty, and Francis Barany. "Ligase detection reaction for identification of low abundance mutations." Clinical Biochemistry 32, no. 4 (June 1999): 287–90. http://dx.doi.org/10.1016/s0009-9120(99)00020-x.

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4

Hashimoto, Masahiko, Kazuhiko Tsukagoshi, and Steven A. Soper. "Microfluidic Reactor for Sequential Operation of Polymerase Chain Reaction/Ligase Detection Reaction." Journal of Advanced Chemical Engineering 1 (2011): 1–11. http://dx.doi.org/10.4303/jace/a110602.

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5

Luo, Weihao, Dianming Zhou, Dixian Luo, Jianhui Jiang, and Xiangmin Xu. "Melting temperature of molecular beacons as an indicator of the ligase detection reaction for multiplex detection of point mutations." Analytical Methods 7, no. 10 (2015): 4225–30. http://dx.doi.org/10.1039/c5ay00475f.

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6

Lehman, Teresa A., Frank Scott, Michael Seddon, Karen Kelly, Edward C. Dempsey, Vincent L. Wilson, James L. Mulshine, and Rama Modali. "Detection of K-rasOncogene Mutations by Polymerase Chain Reaction-Based Ligase Chain Reaction." Analytical Biochemistry 239, no. 2 (August 1996): 153–59. http://dx.doi.org/10.1006/abio.1996.0310.

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7

Ginya, Harumi, Ryouhei Matsushita, and Masafumi Yohda. "Quantification and improvement of error rate during ligase detection reaction." Journal of Bioscience and Bioengineering 109, no. 2 (February 2010): 202–4. http://dx.doi.org/10.1016/j.jbiosc.2009.07.011.

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8

Tooley, P. W., M. M. Carras, E. Hatziloukas, and D. L. Scott. "Use of ligase chain reaction for enhanced detection ofPhytophthora infestans." Canadian Journal of Plant Pathology 24, no. 3 (September 2002): 294–301. http://dx.doi.org/10.1080/07060660209507012.

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9

Yan, Jingli, Zhengping Li, Chenghui Liu, and Yongqiang Cheng. "Simple and sensitive detection of microRNAs with ligase chain reaction." Chemical Communications 46, no. 14 (2010): 2432. http://dx.doi.org/10.1039/b923521c.

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10

Zhou, Qian-Yu, Fang Yuan, Xiao-Hui Zhang, Ying-Lin Zhou, and Xin-Xiang Zhang. "Simultaneous multiple single nucleotide polymorphism detection based on click chemistry combined with DNA-encoded probes." Chemical Science 9, no. 13 (2018): 3335–40. http://dx.doi.org/10.1039/c8sc00307f.

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A novel strategy utilizing a DNA template-directed CuAAC click reaction to mimic a ligation reaction based on DNA ligase was successfully established for multiple SNP detection with high sensitivity and specificity.

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11

Xu, Xiaowen, Lei Wang, Yushu Wu, and Wei Jiang. "Uracil removal-inhibited ligase reaction in combination with catalytic hairpin assembly for the sensitive and specific detection of uracil-DNA glycosylase activity." Analyst 142, no. 24 (2017): 4655–60. http://dx.doi.org/10.1039/c7an01666b.

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12

Ma, Fei, Meng Liu, and Chun-yang Zhang. "Ligase amplification reaction-catalyzed assembly of a single quantum dot-based nanosensor for sensitive detection of alkaline phosphatase." Chemical Communications 55, no. 61 (2019): 8963–66. http://dx.doi.org/10.1039/c9cc04369a.

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13

Rondini, S., M. R. Pingle, S. Das, R. Tesh, M. S. Rundell, J. Hom, S. Stramer, et al. "Development of Multiplex PCR-Ligase Detection Reaction Assay for Detection of West Nile Virus." Journal of Clinical Microbiology 46, no. 7 (May 21, 2008): 2269–79. http://dx.doi.org/10.1128/jcm.02335-07.

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14

Turner, Daniel J., Monib A. Zirvi, Francis Barany, Rosalie Elenitsas, and John Seykora. "Detection of the BRAF V600E mutation in melanocytic lesions using the ligase detection reaction." Journal of Cutaneous Pathology 32, no. 5 (May 2005): 334–39. http://dx.doi.org/10.1111/j.0303-6987.2005.00338.x.

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15

Jukic, D. M. "Detection of the BRAF V600E mutation in melanocytic lesions using the ligase detection reaction." Yearbook of Pathology and Laboratory Medicine 2007 (January 2007): 100–101. http://dx.doi.org/10.1016/s1077-9108(08)70313-x.

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16

Batt, C. A., P. Wagner, M. Wiedmann, Jianying Luo, and R. Gilbert. "Detection of bovine leukocyte adhesion deficiency by nonisotopic ligase chain reaction." Animal Genetics 25, no. 2 (April 24, 2009): 95–98. http://dx.doi.org/10.1111/j.1365-2052.1994.tb00086.x.

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17

Batt, C. A., P. Wagner, M. Wiedmann, Jianying Luo, and R. Gilbert. "Detection of bovine leukocyte adhesion deficiency by nonisotopic ligase chain reaction." Animal Genetics 25 (April 24, 2009): 95–98. http://dx.doi.org/10.1111/j.1365-2052.1994.tb00434.x.

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18

BELGRADER, PHILLIP, MICHAEL M. MARINO, MATTHEW LUBIN, and FRANCIS BARANY. "A Multiplex PCR-Ligase Detection Reaction Assay for Human Identity Testing." Genome Science and Technology 1, no. 2 (January 1996): 77–87. http://dx.doi.org/10.1089/gst.1996.1.77.

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19

Marshall, R. L., T. G. Laffler, M. B. Cerney, J. C. Sustachek, J. D. Kratochvil, and R. L. Morgan. "Detection of HCV RNA by the asymmetric gap ligase chain reaction." Genome Research 4, no. 2 (October 1, 1994): 80–84. http://dx.doi.org/10.1101/gr.4.2.80.

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20

RUMPIANESI, FABIO, MANUELA DONATI, MASSIMO NEGOSANTI, ANTONIETTA DʼANTUONO, MICHELANGELO LA PLACA, and ROBERTO CEVENINI. "Detection of Chlamydia trachomatis by a Ligase Chain Reaction Amplification Method." Sexually Transmitted Diseases 23, no. 3 (May 1996): 177–80. http://dx.doi.org/10.1097/00007435-199605000-00003.

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21

Ching, S., H. Lee, E. W. Hook, M. R. Jacobs, and J. Zenilman. "Ligase chain reaction for detection of Neisseria gonorrhoeae in urogenital swabs." Journal of clinical microbiology 33, no. 12 (1995): 3111–14. http://dx.doi.org/10.1128/jcm.33.12.3111-3114.1995.

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22

Xiao, Zhen-Xian, Hui-Min Cao, Xiao-Hui Luan, Jian-Long Zhao, Dong-Zhi Wei, and Jun-Hua Xiao. "Effects of additives on efficiency and specificity of ligase detection reaction." Molecular Biotechnology 35, no. 2 (February 2007): 129–33. http://dx.doi.org/10.1007/bf02686107.

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23

Ma, Fei, Huan Liu, Chen-chen Li, and Chun-yang Zhang. "A simple and isothermal ligase-based amplification approach based on a ligation-activated cleavage reaction." Chemical Communications 54, no. 89 (2018): 12638–41. http://dx.doi.org/10.1039/c8cc07843b.

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24

Heidari Sharafdarkolaei, S., M. Motovali-Bashi, and P. Gill. "Fluorescent detection of point mutation via ligase reaction assisted by quantum dots and magnetic nanoparticle-based probes." RSC Advances 7, no. 41 (2017): 25665–72. http://dx.doi.org/10.1039/c7ra03767h.

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25

Wiedmann, M., F. Barany, and C. A. Batt. "Detection of Listeria monocytogenes with a nonisotopic polymerase chain reaction-coupled ligase chain reaction assay." Applied and Environmental Microbiology 59, no. 8 (1993): 2743–45. http://dx.doi.org/10.1128/aem.59.8.2743-2745.1993.

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26

Li, Wei, Hongmei Yang, Yafen Wang, Xiaocheng Weng, and Fang Wang. "Highly sensitive detection of 6mA at single-base resolution based on A–C mismatch." Analyst 146, no. 14 (2021): 4450–53. http://dx.doi.org/10.1039/d1an00918d.

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27

Chen, Yan, Ying Zhao, Yan-Bo Li, Yan-Jun Wang, and Gui-Zhen Zhang. "Detection of SNPs of T2DM susceptibility genes by a ligase detection reaction–fluorescent nanosphere technique." Analytical Biochemistry 540-541 (January 2018): 38–44. http://dx.doi.org/10.1016/j.ab.2017.11.003.

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28

Hansen, T. S., N. E. Petersen, A. Iitiä, O. Blaabjerg, P. Hyltoft-Petersen, and M. Hørder. "Robust nonradioactive oligonucleotide ligation assay to detect a common point mutation in the CYP2D6 gene causing abnormal drug metabolism." Clinical Chemistry 41, no. 3 (March 1, 1995): 413–18. http://dx.doi.org/10.1093/clinchem/41.3.413.

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Abstract A new nonradioactive oligonucleotide ligation assay for the detection of a common point mutation in the CYP2D6 gene is presented. The assay takes advantage of simultaneous time-resolved fluorescence measurements of lanthanide-labeled probes and the specificity of T4-DNA ligase in combination with the polymerase chain reaction. This strategy makes it possible to perform the assay using both the wild-type-specific and mutant-specific probes simultaneously, securing an internal control in each reaction. We show that the allele-specific ligation part of the assay can be performed with great accuracy over a wide range of temperatures, salt concentrations, and T4-DNA ligase concentrations. This eliminates the risk of false-positive or false-negative reactions due to variations in these factors. Because the assay is simple to perform, is very reliable, and can be partly automated, we conclude that it is well-suited for analysis in a routine laboratory.

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29

Tortoli, Enrico, Federica Lavinia, and M. Tullia Simonetti. "Early Detection of Mycobacterium tuberculosis in BACTEC Cultures by Ligase Chain Reaction." Journal of Clinical Microbiology 36, no. 9 (1998): 2791–92. http://dx.doi.org/10.1128/jcm.36.9.2791-2792.1998.

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The LCx Mycobacterium tuberculosis ligase chain reaction system (Abbott Diagnostic Division, Abbott Park, Ill.) was used to detect M. tuberculosis in 150 consecutive BACTEC vials on the day on which a positive growth index (GI) was recorded. By LCx, M. tuberculosis DNA was detected in BACTEC vials on average 2.6 days before the presence of acid-fast bacilli could be confirmed by microscopic examination. A total of 106 of 108M. tuberculosis isolates were detected without centrifugation from bottles presenting very low GIs (average, 70; median, 33). No false-positive result was obtained from nontuberculous mycobacteria or from isolates with contaminants.

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30

Wee, Eugene J. H., Muhammad J. A. Shiddiky, Melissa A. Brown, and Matt Trau. "eLCR: electrochemical detection of single DNA base changes via Ligase Chain Reaction." Chemical Communications 48, no. 98 (2012): 12014. http://dx.doi.org/10.1039/c2cc35841g.

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31

Chen, Ying, Mengli Yang, Yun Xiang, Ruo Yuan, and Yaqin Chai. "Ligase chain reaction amplification for sensitive electrochemiluminescent detection of single nucleotide polymorphisms." Analytica Chimica Acta 796 (September 2013): 1–6. http://dx.doi.org/10.1016/j.aca.2013.07.057.

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32

He, W., J. Mao, T. Feng, L. Wang, Z. Li, W. Zu, W. Liang, and L. Zhang. "A novel system for forensic SNP analysis through PCR–ligase detection reaction." Forensic Science International: Genetics Supplement Series 5 (December 2015): e231-e232. http://dx.doi.org/10.1016/j.fsigss.2015.09.092.

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33

Okahata, Y., Y. Masunaga, H. Matsuno, and H. Furusawa. "Quantitative detection of a DNA ligase reaction on a quartz-crystal microbalance." Nucleic Acids Symposium Series 42, no. 1 (November 1, 1999): 147–48. http://dx.doi.org/10.1093/nass/42.1.147.

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34

Abravaya, Klara, John J. Carrino, Sharon Muldoon, and Helen H. Lee. "Detection of point mutations with a modified ligase chain reaction (Gap-LCR)." Nucleic Acids Research 23, no. 4 (1995): 675–82. http://dx.doi.org/10.1093/nar/23.4.675.

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35

Osiowy, C. "Sensitive Detection of HBsAg Mutants by a Gap Ligase Chain Reaction Assay." Journal of Clinical Microbiology 40, no. 7 (July 1, 2002): 2566–71. http://dx.doi.org/10.1128/jcm.40.7.2566-2571.2002.

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36

Nikkari, S., M. Puolakkainen, U. Yli-Kerttula, R. Luukkainen, O. P. Lehtonen, and P. Toivanen. "Ligase chain reaction in detection of Chlamydia DNA in synovial fluid cells." Rheumatology 36, no. 7 (January 1, 1997): 763–65. http://dx.doi.org/10.1093/rheumatology/36.7.763.

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37

Minamitani, S., S. Nishiguchi, T. Kuroki, S. Otani, and T. Monna. "Detection by ligase chain reaction of precore mutant of hepatitis B virus." Hepatology 25, no. 1 (January 1997): 216–22. http://dx.doi.org/10.1002/hep.510250139.

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38

Wang, Yongzhong, Xiaoqin Liu, Dongmei Rui, Minzhi Zhu, Hongyu Zhang, Chunhua Chen, Hongxia Zhao, Zhen Zhu, Xin Xu, and Liming Zheng. "Detection of mutations associated with resistance to rifampicin and isoniazid in Mycobacterium tuberculosis by polymerase chain reaction-ligase detection reaction." Acta Biochimica et Biophysica Sinica 46, no. 1 (November 11, 2013): 78–81. http://dx.doi.org/10.1093/abbs/gmt119.

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39

Nathanson, Daniel R., Garrett M. Nash, Beiyun Chen, William Gerald, and Philip B. Paty. "Detection of HER-2/neu gene amplification in breast cancer using a novel polymerase chain reaction/ligase detection reaction technique." Journal of the American College of Surgeons 197, no. 3 (September 2003): 419–25. http://dx.doi.org/10.1016/s1072-7515(03)00431-9.

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40

Davies, P. O., and G. L. Ridgway. "The role of polymerase chain reaction and ligase chain reaction for the detection of Chlamydia trachomatis." International Journal of STD & AIDS 8, no. 12 (December 1, 1997): 731–38. http://dx.doi.org/10.1258/0956462971919101.

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41

Davis, J. D., P. K. Riley, C. W. Peters, and K. H. Rand. "A Comparison of Ligase Chain Reaction to Polymerase Chain Reaction in the Detection ofChlamydia trachomatisEndocervical Infections." Infectious Diseases in Obstetrics and Gynecology 6, no. 2 (1998): 57–60. http://dx.doi.org/10.1155/s1064744998000143.

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Objective:To compare the reliability of ligase chain reaction (LCR) to polymerase chain reaction (PCR) in detectingChlamydia trachomatisendocervical infections.Methods:We conducted a prospective study of 486 patients at risk for chlamydial infection of the endocervix. We obtained two endocervical specimens from each patient and used LCR and PCR to detectC. trachomatis. Discrepant results between the two techniques were resolved by repeat testing and by testing for the major outer membrane protein (MOMP) gene, if necessary. We determined the sensitivity, specificity, positive predictive value, and negative predictive value for each test, using concordant results or MOMP gene results as the “gold standard”.Results:Of the 486 patients, 42 (8.6%) had evidence ofC. trachomatisinfection after resolution of discrepant results. Of the 42 true positive specimens, 41 were positive by initial LCR and 38 were positive by initial PCR. Of the 444 true negative specimens, none had a positive initial LCR result, while 2 had a positive initial PCR test. Therefore, compared to the gold standard, LCR had a sensitivity of 97.6% and specificity of 100%, while PCR had a sensitivity of 90% and a specificity of 99.5%. The positive and negative predictive values of LCR were 100% and 99.8%, respectively. PCR had a positive predictive value of 95% and a negative predictive value of 99.1%. The difference in sensitivity of LCR versus PCR was not statistically significant (P= .125).Conclusion:LCR and PCR perform equally well in detectingC. trachomatisendocervical infections.

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42

Waites, K. B., K. R. Smith, M. A. Crum, R. D. Hockett, A. H. Wells, and E. W. Hook. "Detection of Chlamydia trachomatisEndocervical Infections by Ligase Chain Reaction versus ACCESSChlamydia Antigen Assay." Journal of Clinical Microbiology 37, no. 9 (1999): 3072–73. http://dx.doi.org/10.1128/jcm.37.9.3072-3073.1999.

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Ligase chain reaction (LCR) was compared with ACCESS immunoassay for detection of chlamydial infections in females. Despite efforts to improve ACCESS performance by evaluation of specimens that were in the test performance “grey zone,” LCR remained more sensitive and was less expensive to perform. ACCESS had a sensitivity of 83.9%, a specificity of 99.7%, a positive predictive value of 96.3%, and a negative predictive value of 98.5%.

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43

Li, Wenshuai, Guorui Wu, Min Wang, Aiqin Yue, Weijun Du, Dingbin Liu, and Jinzhong Zhao. "Colorimetric detection of class A soybean saponins by coupling DNAzyme with the gap ligase chain reaction." Analytical Methods 12, no. 26 (2020): 3361–67. http://dx.doi.org/10.1039/d0ay00820f.

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We propose a colorimetric assay based on the coupling of gap ligase chain reaction (Gap-LCR) with DNAzyme to detect the target GmSg-1 genes of class A soybean saponins with the naked eye, without the involvement of expensive instruments.

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44

Loeffelholz, M. J., S. J. Jirsa, R. K. Teske, and J. N. Woods. "Effect of Endocervical Specimen Adequacy on Ligase Chain Reaction Detection of Chlamydia trachomatis." Journal of Clinical Microbiology 39, no. 11 (November 1, 2001): 3838–41. http://dx.doi.org/10.1128/jcm.39.11.3838-3841.2001.

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45

Birkenmeyer, L., and A. S. Armstrong. "Preliminary evaluation of the ligase chain reaction for specific detection of Neisseria gonorrhoeae." Journal of Clinical Microbiology 30, no. 12 (1992): 3089–94. http://dx.doi.org/10.1128/jcm.30.12.3089-3094.1992.

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46

Bassiri, M., H. Y. Hu, M. A. Domeika, J. Burczak, L. O. Svensson, H. H. Lee, and P. A. Mårdh. "Detection of Chlamydia trachomatis in urine specimens from women by ligase chain reaction." Journal of clinical microbiology 33, no. 4 (1995): 898–900. http://dx.doi.org/10.1128/jcm.33.4.898-900.1995.

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47

ANDREWS, W., H. LEE, W. RODEN, and C. MOTT. "Detection of genitourinary tract infection in pregnant women by ligase chain reaction assay." Obstetrics & Gynecology 89, no. 4 (April 1997): 556–60. http://dx.doi.org/10.1016/s0029-7844(97)00003-3.

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48

Demchinskaya, Anna V., Ilya A. Shilov, Anna S. Karyagina, Vladimir G. Lunin, Olga V. Sergienko, Olga L. Voronina, Matthias Leiser, and Lutz Plobner. "A new approach for point mutation detection based on a ligase chain reaction." Journal of Biochemical and Biophysical Methods 50, no. 1 (December 2001): 79–89. http://dx.doi.org/10.1016/s0165-022x(01)00178-6.

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49

Kälin, I., S. Shephard, and U. Candrian. "Evaluation of the ligase chain reaction (LCR) for the detection of points mutation." Mutation Research Letters 283, no. 2 (October 1992): 119–23. http://dx.doi.org/10.1016/0165-7992(92)90143-6.

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50

Dent, Arlene E., Christopher T. Yohn, James W. Kazura, John Vulule, Ann M. Moormann, and Peter A. Zimmerman. "A Polymerase Chain Reaction/Ligase Detection Reaction–Fluorescent Microsphere Assay to Determine Plasmodium falciparum MSP-119 Haplotypes." American Journal of Tropical Medicine and Hygiene 77, no. 2 (August 1, 2007): 250–55. http://dx.doi.org/10.4269/ajtmh.2007.77.250.

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