Journal articles on the topic 'Ligand binding'
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Seo, Sangmin, Jonghwan Choi, Soon Kil Ahn, Kil Won Kim, Jaekwang Kim, Jaehyuck Choi, Jinho Kim, and Jaegyoon Ahn. "Prediction of GPCR-Ligand Binding Using Machine Learning Algorithms." Computational and Mathematical Methods in Medicine 2018 (2018): 1–5. http://dx.doi.org/10.1155/2018/6565241.
Full textAziz, Fitri Kusvila, Cantika Nukitasari, Fauziyah Ardli Oktavianingrum, Lita Windy Aryati, and Broto Santoso. "Hasil In Silico Senyawa Z12501572, Z00321025, SCB5631028 dan SCB13970547 dibandingkan Turunan Zerumbon terhadap Human Liver Glycogen Phosphorylase (1l5Q) sebagai Antidiabetes." Jurnal Kimia VALENSI 2, no. 2 (November 30, 2016): 120–24. http://dx.doi.org/10.15408/jkv.v2i2.4170.
Full textWilliams, Mobolaji. "Derangement model of ligand-receptor binding." Computational and Mathematical Biophysics 10, no. 1 (January 1, 2022): 123–66. http://dx.doi.org/10.1515/cmb-2022-0137.
Full textMcNeely, Patrick M., Andrea N. Naranjo, Kimberly Forsten-Williams, and Anne Skaja Robinson. "A2AR Binding Kinetics in the Ligand Depletion Regime." SLAS DISCOVERY: Advancing the Science of Drug Discovery 22, no. 2 (September 27, 2016): 166–75. http://dx.doi.org/10.1177/1087057116667256.
Full textMicovic, Vuk, Milovan Ivanovic, and Ljiljana Dosen-Micovic. "Structural requirements for ligands of the δ-opioid receptor." Journal of the Serbian Chemical Society 74, no. 11 (2009): 1207–17. http://dx.doi.org/10.2298/jsc0911207m.
Full textTozer, Eileen Collins, Paul E. Hughes, and Joseph C. Loftus. "Ligand binding and affinity modulation of integrins." Biochemistry and Cell Biology 74, no. 6 (December 1, 1996): 785–98. http://dx.doi.org/10.1139/o96-085.
Full textMarsh, Lorraine. "Strong Ligand-Protein Interactions Derived from Diffuse Ligand Interactions with Loose Binding Sites." BioMed Research International 2015 (2015): 1–6. http://dx.doi.org/10.1155/2015/746980.
Full textWeatherman, Ross V., Robert J. Fletterick, and Thomas S. Scanlan. "Nuclear-Receptor Ligands and Ligand-Binding Domains." Annual Review of Biochemistry 68, no. 1 (June 1999): 559–81. http://dx.doi.org/10.1146/annurev.biochem.68.1.559.
Full textChristensen, U., and L. Mølgaard. "Positive co-operative binding at two weak lysine-binding sites governs the Glu-plasminogen conformational change." Biochemical Journal 285, no. 2 (July 15, 1992): 419–25. http://dx.doi.org/10.1042/bj2850419.
Full textCao, Chen, Lincong Wang, Xiaoyang Chen, Shuxue Zou, Guishen Wang, and Shutan Xu. "Amino Acids in Nine Ligand-Prefer Ramachandran Regions." BioMed Research International 2015 (2015): 1–10. http://dx.doi.org/10.1155/2015/757495.
Full textChen, Xun, Steven Stout, Uwe Mueller, George Boykow, Richard Visconti, Phieng Siliphaivanh, Kerrie Spencer, et al. "Label-Free, LC-MS-Based Assays to Quantitate Small-Molecule Antagonist Binding to the Mammalian BLT1 Receptor." SLAS DISCOVERY: Advancing the Science of Drug Discovery 22, no. 9 (August 1, 2017): 1131–41. http://dx.doi.org/10.1177/2472555217719748.
Full textJia, Zhe, Lin Li, Yunhui Peng, Feng Ding, and Emil Alexov. "The capricious electrostatic force: Revealing the signaling pathway in integrin α2-I domain." Journal of Theoretical and Computational Chemistry 17, no. 03 (May 2018): 1840001. http://dx.doi.org/10.1142/s0219633618400011.
Full textSouza, P. C. T., A. C. Puhl, L. Martínez, R. Aparício, A. S. Nascimento, A. C. M. Figueira, P. Nguyen, P. Webb, M. S. Skaf, and I. Polikarpov. "Identification of a New Hormone-Binding Site on the Surface of Thyroid Hormone Receptor." Molecular Endocrinology 28, no. 4 (April 1, 2014): 534–45. http://dx.doi.org/10.1210/me.2013-1359.
Full textMailfait, S., E. Thoreau, D. Belaiche, and P. Formstecher And B Sablonnie. "Critical role of the H6-H7 loop in the conformational adaptation of all-trans retinoic acid and synthetic retinoids within the ligand-binding site of RARalpha." Journal of Molecular Endocrinology 24, no. 3 (June 1, 2000): 353–64. http://dx.doi.org/10.1677/jme.0.0240353.
Full textHu, Guodong, Haiyan Li, Shicai Xu, and Jihua Wang. "Ligand Binding Mechanism and Its Relationship with Conformational Changes in Adenine Riboswitch." International Journal of Molecular Sciences 21, no. 6 (March 11, 2020): 1926. http://dx.doi.org/10.3390/ijms21061926.
Full textGenest, Alexander, Sven Krüger, Alexei B. Gordienko, and Notker Rösch. "Gold-Thiolate Clusters: A Relativistic Density Functional Study of the Model Species Au13(SR)n, R = H, CH3, n = 4, 6, 8." Zeitschrift für Naturforschung B 59, no. 11-12 (December 1, 2004): 1585–99. http://dx.doi.org/10.1515/znb-2004-11-1232.
Full textObermoeller-McCormick, L. M., Y. Li, H. Osaka, D. J. FitzGerald, A. L. Schwartz, and G. Bu. "Dissection of receptor folding and ligand-binding property with functional minireceptors of LDL receptor-related protein." Journal of Cell Science 114, no. 5 (March 1, 2001): 899–908. http://dx.doi.org/10.1242/jcs.114.5.899.
Full textIatmanen-Harbi, Soria, lucile Senicourt, Vassilios Papadopoulos, Olivier Lequin, and Jean-Jacques Lacapere. "Characterization of the High-Affinity Drug Ligand Binding Site of Mouse Recombinant TSPO." International Journal of Molecular Sciences 20, no. 6 (March 21, 2019): 1444. http://dx.doi.org/10.3390/ijms20061444.
Full textKlunk, W. E., J. W. Pettegrew, and D. J. Abraham. "Two simple methods for quantifying low-affinity dye-substrate binding." Journal of Histochemistry & Cytochemistry 37, no. 8 (August 1989): 1293–97. http://dx.doi.org/10.1177/37.8.2666512.
Full textMeijsing, Sebastiaan H., Cem Elbi, Hans F. Luecke, Gordon L. Hager, and Keith R. Yamamoto. "The Ligand Binding Domain Controls Glucocorticoid Receptor Dynamics Independent of Ligand Release." Molecular and Cellular Biology 27, no. 7 (January 29, 2007): 2442–51. http://dx.doi.org/10.1128/mcb.01570-06.
Full textUrien, S., F. Brée, B. Testa, and J. P. Tillement. "pH-dependency of basic ligand binding to α1-acid glycoprotein (orosomucoid)." Biochemical Journal 280, no. 1 (November 15, 1991): 277–80. http://dx.doi.org/10.1042/bj2800277.
Full textMonaco, Serena, Jonathan Ramírez-Cárdenas, Ana Teresa Carmona, Inmaculada Robina, and Jesus Angulo. "Inter-Ligand STD NMR: An Efficient 1D NMR Approach to Probe Relative Orientation of Ligands in a Multi-Subsite Protein Binding Pocket." Pharmaceuticals 15, no. 8 (August 21, 2022): 1030. http://dx.doi.org/10.3390/ph15081030.
Full textHonda, Shigenori, Hirokazu Kashiwagi, Teruo Kiyoi, Hisashi Kato, Satoru Kosugi, Masamichi Shiraga, Yoshiyuki Kurata, and Yoshiaki Tomiyama. "Amino acid mutagenesis within ligand-binding loops in αv confers loss-of-function or gain-of-function phenotype on integrin αvβ3." Thrombosis and Haemostasis 92, no. 11 (2004): 1092–98. http://dx.doi.org/10.1160/th04-04-0257.
Full textMondoro, TH, CD Wall, MM White, and LK Jennings. "Selective induction of a glycoprotein IIIa ligand-induced binding site by fibrinogen and von Willebrand factor." Blood 88, no. 10 (November 15, 1996): 3824–30. http://dx.doi.org/10.1182/blood.v88.10.3824.bloodjournal88103824.
Full textNewham, Peter, Sue E. Craig, Katherine Clark, A. Paul Mould, and Martin J. Humphries. "Analysis of Ligand-Induced and Ligand-Attenuated Epitopes on the Leukocyte Integrin α4β1: VCAM-1, Mucosal Addressin Cell Adhesion Molecule-1, and Fibronectin Induce Distinct Conformational Changes." Journal of Immunology 160, no. 9 (May 1, 1998): 4508–17. http://dx.doi.org/10.4049/jimmunol.160.9.4508.
Full textAkke, Mikael. "Conformational dynamics and thermodynamics of protein–ligand binding studied by NMR relaxation." Biochemical Society Transactions 40, no. 2 (March 21, 2012): 419–23. http://dx.doi.org/10.1042/bst20110750.
Full textFukuzawa, Kaori, Kazuo Kitaura, K. Nakata, Tsuguchika Kaminuma, and T. Nakano. "Fragment molecular orbital study of the binding energy of ligands to the estrogen receptor." Pure and Applied Chemistry 75, no. 11-12 (January 1, 2003): 2405–10. http://dx.doi.org/10.1351/pac200375112405.
Full textRifai, Yusnita. "SEARCH FOR GLIOMA DIRECT BINDING SITE OF ALKALOID USING PROTEIN-LIGAND ANT SYSTEM®." Asian Journal of Pharmaceutical and Clinical Research 11, no. 15 (October 3, 2018): 65. http://dx.doi.org/10.22159/ajpcr.2018.v11s3.30034.
Full textChitnis, C. E., A. Chaudhuri, R. Horuk, A. O. Pogo, and L. H. Miller. "The domain on the Duffy blood group antigen for binding Plasmodium vivax and P. knowlesi malarial parasites to erythrocytes." Journal of Experimental Medicine 184, no. 4 (October 1, 1996): 1531–36. http://dx.doi.org/10.1084/jem.184.4.1531.
Full textLi, Huiqing, Jing Wei, Youming Dong, and Zhiyue Yu. "Interaction between 2-(p-toluidino)-6-naphthalenesulfonic acid sodium salt (TNS) and β-lactoglobulin." Canadian Journal of Chemistry 94, no. 8 (August 2016): 680–86. http://dx.doi.org/10.1139/cjc-2015-0450.
Full textSencanski, Milan, Milovan Ivanovic, Sonja Vuckovic, and Ljiljana Dosen-Micovic. "Modeling the ligand specific μ- and δ-opioid receptor conformations." Journal of the Serbian Chemical Society 76, no. 9 (2011): 1247–62. http://dx.doi.org/10.2298/jsc110120110s.
Full textZlatovic, Mario, Vladimir Sukalovic, Sladjana Kostic-Rajacic, Deana Andric, and Goran Roglic. "Influence of N-1 substituent properties on binding affinities of arylpiperazines to the binding site of 5-HT1A receptor." Journal of the Serbian Chemical Society 71, no. 11 (2006): 1125–35. http://dx.doi.org/10.2298/jsc0611125z.
Full textKappel, Kalli, Yinglong Miao, and J. Andrew McCammon. "Accelerated molecular dynamics simulations of ligand binding to a muscarinic G-protein-coupled receptor." Quarterly Reviews of Biophysics 48, no. 4 (July 16, 2015): 479–87. http://dx.doi.org/10.1017/s0033583515000153.
Full textChen, Jake Zheng, William Bret Church, Karine Bastard, Anthony P. Duff, and Thomas Balle. "Binding and Dynamics Demonstrate the Destabilization of Ligand Binding for the S688Y Mutation in the NMDA Receptor GluN1 Subunit." Molecules 28, no. 10 (May 15, 2023): 4108. http://dx.doi.org/10.3390/molecules28104108.
Full textKomiyama, Yusuke, Masaki Banno, Kokoro Ueki, Gul Saad, and Kentaro Shimizu. "Automatic generation of bioinformatics tools for predicting protein–ligand binding sites." Bioinformatics 32, no. 6 (November 5, 2015): 901–7. http://dx.doi.org/10.1093/bioinformatics/btv593.
Full textSilverman, D. H., J. M. Krueger, and M. L. Karnovsky. "Specific binding sites for muramyl peptides on murine macrophages." Journal of Immunology 136, no. 6 (March 15, 1986): 2195–201. http://dx.doi.org/10.4049/jimmunol.136.6.2195.
Full textKatzenellenbogen, J. A., and R. Muthyala. "Interactions of exogenous endocrine active substances with nuclear receptors." Pure and Applied Chemistry 75, no. 11-12 (January 1, 2003): 1797–817. http://dx.doi.org/10.1351/pac200375111797.
Full textTu, L., A. Chen, M. D. Delahunty, K. L. Moore, S. R. Watson, R. P. McEver, and T. F. Tedder. "L-selectin binds to P-selectin glycoprotein ligand-1 on leukocytes: interactions between the lectin, epidermal growth factor, and consensus repeat domains of the selectins determine ligand binding specificity." Journal of Immunology 157, no. 9 (November 1, 1996): 3995–4004. http://dx.doi.org/10.4049/jimmunol.157.9.3995.
Full textRosendal, J., P. Ertbjerg, and J. Knudsen. "Characterization of ligand binding to acyl-CoA-binding protein." Biochemical Journal 290, no. 2 (March 1, 1993): 321–26. http://dx.doi.org/10.1042/bj2900321.
Full textSchaaf, Marcel J. M., and John A. Cidlowski. "Molecular Determinants of Glucocorticoid Receptor Mobility in Living Cells: the Importance of Ligand Affinity." Molecular and Cellular Biology 23, no. 6 (March 15, 2003): 1922–34. http://dx.doi.org/10.1128/mcb.23.6.1922-1934.2003.
Full textMiao, Yinglong, Apurba Bhattarai, and Jinan Wang. "Ligand Gaussian Accelerated Molecular Dynamics (LiGaMD): Characterization of Ligand Binding Thermodynamics and Kinetics." Journal of Chemical Theory and Computation 16, no. 9 (July 21, 2020): 5526–47. http://dx.doi.org/10.1021/acs.jctc.0c00395.
Full textPreisler-Mashek, Mara T., Natalia Solodin, Bethany L. Stark, Michael K. Tyriver, and Elaine T. Alarid. "Ligand-specific regulation of proteasome-mediated proteolysis of estrogen receptor-α." American Journal of Physiology-Endocrinology and Metabolism 282, no. 4 (April 1, 2002): E891—E898. http://dx.doi.org/10.1152/ajpendo.00353.2001.
Full textYoshikawa, Chisato, Hiroaki Ishida, Nami Ohashi, and Toshimasa Itoh. "Synthesis of a Coumarin-Based PPARγ Fluorescence Probe for Competitive Binding Assay." International Journal of Molecular Sciences 22, no. 8 (April 14, 2021): 4034. http://dx.doi.org/10.3390/ijms22084034.
Full textKim, Hye Yeon, Ae Nim Pae, Yeon Joo Lee, Joon Kyu Park, Dae Sung Kim, Kwang Yeon Hwang, Myeong-Hee Yu, and Eunice EunKyeong Kim. "Structural Comparison of Ligand-Binding Domains in Estrogen-Related Receptors." Key Engineering Materials 277-279 (January 2005): 107–12. http://dx.doi.org/10.4028/www.scientific.net/kem.277-279.107.
Full textLee, Simon, Clare Faux, Jennifer Nixon, Daniel Alete, John Chilton, Muhamed Hawadle, and Andrew W. Stoker. "Dimerization of Protein Tyrosine Phosphatase σ Governs both Ligand Binding and Isoform Specificity." Molecular and Cellular Biology 27, no. 5 (December 18, 2006): 1795–808. http://dx.doi.org/10.1128/mcb.00535-06.
Full textMikolajek, H., P. Mangione, S. P. Wood, and M. B. Pepys. "Ligand binding to pentraxins." Acta Crystallographica Section A Foundations of Crystallography 64, a1 (August 23, 2008): C316. http://dx.doi.org/10.1107/s0108767308089885.
Full textDi Cera, Enrico. "Mechanisms of ligand binding." Biophysics Reviews 1, no. 1 (December 2020): 011303. http://dx.doi.org/10.1063/5.0020997.
Full textKiger, Laurent, Julien Uzan, Sylvia Dewilde, Thorsten Burmester, Thomas Hankeln, Luc Moens, Djemel Hamdane, Veronique Baudin-Creuza, and Michael Marden. "Neuroglobin Ligand Binding Kinetics." IUBMB Life 56, no. 11 (November 2004): 709–19. http://dx.doi.org/10.1080/15216540500037711.
Full textBligh, P. H. "Ligand binding — A primer." Biochemical Education 16, no. 4 (October 1988): 186–95. http://dx.doi.org/10.1016/0307-4412(88)90115-x.
Full textReiter, Johannes, and Irving R. Epstein. "Cooperative ligand-lattice binding." Biophysical Chemistry 33, no. 1 (March 1989): 1–9. http://dx.doi.org/10.1016/0301-4622(89)80001-8.
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