Journal articles on the topic 'Lateral gene transfers'
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Andersson, Jan O., and Andrew J. Roger. "Evolutionary Analyses of the Small Subunit of Glutamate Synthase: Gene Order Conservation, Gene Fusions, and Prokaryote-to- Eukaryote Lateral Gene Transfers." Eukaryotic Cell 1, no. 2 (April 2002): 304–10. http://dx.doi.org/10.1128/ec.1.2.304-310.2002.
THUILLARD, MARC, and VINCENT MOULTON. "IDENTIFYING AND RECONSTRUCTING LATERAL TRANSFERS FROM DISTANCE MATRICES BY COMBINING THE MINIMUM CONTRADICTION METHOD AND NEIGHBOR-NET." Journal of Bioinformatics and Computational Biology 09, no. 04 (August 2011): 453–70. http://dx.doi.org/10.1142/s0219720011005409.
Tofigh, A., M. Hallett, and J. Lagergren. "Simultaneous Identification of Duplications and Lateral Gene Transfers." IEEE/ACM Transactions on Computational Biology and Bioinformatics 8, no. 2 (March 2011): 517–35. http://dx.doi.org/10.1109/tcbb.2010.14.
Marri, Pradeep Reddy, John P. Bannantine, Michael L. Paustian, and G. Brian Golding. "Lateral gene transfer in Mycobacterium avium subspecies paratuberculosis." Canadian Journal of Microbiology 52, no. 6 (June 1, 2006): 560–69. http://dx.doi.org/10.1139/w06-001.
Zhi-Zhong Chen, Fei Deng, and Lusheng Wang. "Simultaneous Identification of Duplications, Losses, and Lateral Gene Transfers." IEEE/ACM Transactions on Computational Biology and Bioinformatics 9, no. 5 (September 2012): 1515–28. http://dx.doi.org/10.1109/tcbb.2012.79.
Yubuki, Naoji, Luis Javier Galindo, Guillaume Reboul, Purificación López-García, Matthew W. Brown, Nicolas Pollet, and David Moreira. "Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina–Blastocystis Stramenopile Lineage." Molecular Biology and Evolution 37, no. 3 (November 6, 2019): 651–59. http://dx.doi.org/10.1093/molbev/msz250.
Friedrich, Michael W. "Phylogenetic Analysis Reveals Multiple Lateral Transfers of Adenosine-5′-Phosphosulfate Reductase Genes among Sulfate-Reducing Microorganisms." Journal of Bacteriology 184, no. 1 (January 1, 2002): 278–89. http://dx.doi.org/10.1128/jb.184.1.278-289.2002.
Abby, Sophie S., Eric Tannier, Manolo Gouy, and Vincent Daubin. "Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests." BMC Bioinformatics 11, no. 1 (2010): 324. http://dx.doi.org/10.1186/1471-2105-11-324.
Alsmark, Cecilia, Peter G. Foster, Thomas Sicheritz-Ponten, Sirintra Nakjang, T. Martin Embley, and Robert P. Hirt. "Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes." Genome Biology 14, no. 2 (2013): R19. http://dx.doi.org/10.1186/gb-2013-14-2-r19.
Gophna, Uri. "Complexity Apparently Is Not a Barrier to Lateral Gene Transfers." Microbe Magazine 4, no. 12 (December 1, 2009): 549–53. http://dx.doi.org/10.1128/microbe.4.549.1.
Nesbø, Camilla L., Eric Bapteste, Bruce Curtis, Håkon Dahle, Philippe Lopez, Dave Macleod, Marlena Dlutek, et al. "The Genome of Thermosipho africanus TCF52B: Lateral Genetic Connections to the Firmicutes and Archaea." Journal of Bacteriology 191, no. 6 (January 5, 2009): 1974–78. http://dx.doi.org/10.1128/jb.01448-08.
Naumoff, D. G., and S. N. Dedysh. "Glycoside Hydrolases of the Obligate Methanotroph <i>Methyloferula stellata</i>: an Unusual Evolutionary Strategy not Involving Distant Lateral Transfers." Микробиология 92, no. 3 (May 1, 2023): 243–49. http://dx.doi.org/10.31857/s002636562260078x.
Katz, L. A. "Lateral gene transfers and the evolution of eukaryotes: theories and data." INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 52, no. 5 (September 1, 2002): 1893–900. http://dx.doi.org/10.1099/ijs.0.02113-0.
Katz, Laura A. "Lateral gene transfers and the evolution of eukaryotes: theories and data." International Journal of Systematic and Evolutionary Microbiology 52, no. 5 (September 1, 2002): 1893–900. http://dx.doi.org/10.1099/00207713-52-5-1893.
Katz, Laura A. "Recent events dominate interdomain lateral gene transfers between prokaryotes and eukaryotes and, with the exception of endosymbiotic gene transfers, few ancient transfer events persist." Philosophical Transactions of the Royal Society B: Biological Sciences 370, no. 1678 (September 26, 2015): 20140324. http://dx.doi.org/10.1098/rstb.2014.0324.
Liapounova, Natalia A., Vladimir Hampl, Paul M. K. Gordon, Christoph W. Sensen, Lashitew Gedamu, and Joel B. Dacks. "Reconstructing the Mosaic Glycolytic Pathway of the Anaerobic Eukaryote Monocercomonoides." Eukaryotic Cell 5, no. 12 (October 27, 2006): 2138–46. http://dx.doi.org/10.1128/ec.00258-06.
Szöllősi, Gergely J., Adrián Arellano Davín, Eric Tannier, Vincent Daubin, and Bastien Boussau. "Genome-scale phylogenetic analysis finds extensive gene transfer among fungi." Philosophical Transactions of the Royal Society B: Biological Sciences 370, no. 1678 (September 26, 2015): 20140335. http://dx.doi.org/10.1098/rstb.2014.0335.
Oliver, Richard P., and Peter S. Solomon. "Recent Fungal Diseases of Crop Plants: Is Lateral Gene Transfer a Common Theme?" Molecular Plant-Microbe Interactions® 21, no. 3 (March 2008): 287–93. http://dx.doi.org/10.1094/mpmi-21-3-0287.
Andersson, Jan O., Åsa M. Sjögren, Lesley A. M. Davis, T. Martin Embley, and Andrew J. Roger. "Phylogenetic Analyses of Diplomonad Genes Reveal Frequent Lateral Gene Transfers Affecting Eukaryotes." Current Biology 13, no. 2 (January 2003): 94–104. http://dx.doi.org/10.1016/s0960-9822(03)00003-4.
Parker, Matthew A., and David A. Kennedy. "Diversity and relationships of bradyrhizobia from legumes native to eastern North America." Canadian Journal of Microbiology 52, no. 12 (December 1, 2006): 1148–57. http://dx.doi.org/10.1139/w06-076.
Danchin, Etienne G. J., Marie-Noëlle Rosso, Paulo Vieira, Janice de Almeida-Engler, Pedro M. Coutinho, Bernard Henrissat, and Pierre Abad. "Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes." Proceedings of the National Academy of Sciences 107, no. 41 (September 27, 2010): 17651–56. http://dx.doi.org/10.1073/pnas.1008486107.
Romero, Miguel, R. Cerritos, and Cecilia Ximenez. "Horizontal Gene Transfers from Bacteria toEntamoebaComplex: A Strategy for Dating Events along Species Divergence." Journal of Parasitology Research 2016 (2016): 1–10. http://dx.doi.org/10.1155/2016/3241027.
Olofsson, Jill K., Luke T. Dunning, Marjorie R. Lundgren, Henry J. Barton, John Thompson, Nicholas Cuff, Menaka Ariyarathne, et al. "Population-Specific Selection on Standing Variation Generated by Lateral Gene Transfers in a Grass." Current Biology 29, no. 22 (November 2019): 3921–27. http://dx.doi.org/10.1016/j.cub.2019.09.023.
Dunning, Luke T., Jill K. Olofsson, Christian Parisod, Rimjhim Roy Choudhury, Jose J. Moreno-Villena, Yang Yang, Jacqueline Dionora, et al. "Lateral transfers of large DNA fragments spread functional genes among grasses." Proceedings of the National Academy of Sciences 116, no. 10 (February 20, 2019): 4416–25. http://dx.doi.org/10.1073/pnas.1810031116.
Hirt, Robert P., Cecilia Alsmark, and T. Martin Embley. "Lateral gene transfers and the origins of the eukaryote proteome: a view from microbial parasites." Current Opinion in Microbiology 23 (February 2015): 155–62. http://dx.doi.org/10.1016/j.mib.2014.11.018.
Klein, Michael, Michael Friedrich, Andrew J. Roger, Philip Hugenholtz, Susan Fishbain, Heike Abicht, Linda L. Blackall, David A. Stahl, and Michael Wagner. "Multiple Lateral Transfers of Dissimilatory Sulfite Reductase Genes between Major Lineages of Sulfate-Reducing Prokaryotes." Journal of Bacteriology 183, no. 20 (October 15, 2001): 6028–35. http://dx.doi.org/10.1128/jb.183.20.6028-6035.2001.
Bodilis, Josselin, Sandrine Nsigue-Meilo, Ludovic Besaury, and Laurent Quillet. "Variable Copy Number, Intra-Genomic Heterogeneities and Lateral Transfers of the 16S rRNA Gene in Pseudomonas." PLoS ONE 7, no. 4 (April 24, 2012): e35647. http://dx.doi.org/10.1371/journal.pone.0035647.
Foster, Jeremy M., Paul J. Davis, Sylvine Raverdy, Marion H. Sibley, Elisabeth A. Raleigh, Sanjay Kumar, and Clotilde K. S. Carlow. "Evolution of Bacterial Phosphoglycerate Mutases: Non-Homologous Isofunctional Enzymes Undergoing Gene Losses, Gains and Lateral Transfers." PLoS ONE 5, no. 10 (October 26, 2010): e13576. http://dx.doi.org/10.1371/journal.pone.0013576.
Paganini, Julien, Amandine Campan-Fournier, Martine Da Rocha, Philippe Gouret, Pierre Pontarotti, Eric Wajnberg, Pierre Abad, and Etienne G. J. Danchin. "Contribution of Lateral Gene Transfers to the Genome Composition and Parasitic Ability of Root-Knot Nematodes." PLoS ONE 7, no. 11 (November 30, 2012): e50875. http://dx.doi.org/10.1371/journal.pone.0050875.
Watkins, Russell F., and Michael W. Gray. "The Frequency of Eubacterium-to-Eukaryote Lateral Gene Transfers Shows Significant Cross-Taxa Variation Within Amoebozoa." Journal of Molecular Evolution 63, no. 6 (November 2, 2006): 801–14. http://dx.doi.org/10.1007/s00239-006-0031-0.
Niklas, Karl J., and Ulrich Kutschera. "The evolutionary development of plant body plans." Functional Plant Biology 36, no. 8 (2009): 682. http://dx.doi.org/10.1071/fp09107.
Coombs, J. M., and T. Barkay. "Molecular Evidence for the Evolution of Metal Homeostasis Genes by Lateral Gene Transfer in Bacteria from the Deep Terrestrial Subsurface." Applied and Environmental Microbiology 70, no. 3 (March 2004): 1698–707. http://dx.doi.org/10.1128/aem.70.3.1698-1707.2004.
Brochier-Armanet, Céline, and Patrick Forterre. "Widespread distribution of archaeal reverse gyrase in thermophilic bacteria suggests a complex history of vertical inheritance and lateral gene transfers." Archaea 2, no. 2 (2006): 83–93. http://dx.doi.org/10.1155/2006/582916.
Sen, Arnab, Vincent Daubin, Danis Abrouk, Isaac Gifford, Alison M. Berry, and Philippe Normand. "Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders ‘Frankiales’ and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov." International Journal of Systematic and Evolutionary Microbiology 64, Pt_11 (November 1, 2014): 3821–32. http://dx.doi.org/10.1099/ijs.0.063966-0.
Kalyuzhnaya, Marina G., Natalia Korotkova, Gregory Crowther, Christopher J. Marx, Mary E. Lidstrom, and Ludmila Chistoserdova. "Analysis of Gene Islands Involved in Methanopterin-Linked C1 Transfer Reactions Reveals New Functions and Provides Evolutionary Insights." Journal of Bacteriology 187, no. 13 (July 1, 2005): 4607–14. http://dx.doi.org/10.1128/jb.187.13.4607-4614.2005.
Mukai, Atsushi, and Hiroshi Endoh. "Presence of a Bacterial-Like Citrate Synthase Gene in Tetrahymena thermophila : Recent Lateral Gene Transfers (LGT) or Multiple Gene Losses Subsequent to a Single Ancient LGT?" Journal of Molecular Evolution 58, no. 5 (May 1, 2004): 540–49. http://dx.doi.org/10.1007/s00239-003-2576-5.
Hafez, Mohamed, and Georg Hausner. "Homing endonucleases: DNA scissors on a mission." Genome 55, no. 8 (August 2012): 553–69. http://dx.doi.org/10.1139/g2012-049.
Guidot, Alice, Philippe Prior, Jens Schoenfeld, Sébastien Carrère, Stéphane Genin, and Christian Boucher. "Genomic Structure and Phylogeny of the Plant Pathogen Ralstonia solanacearum Inferred from Gene Distribution Analysis." Journal of Bacteriology 189, no. 2 (November 3, 2006): 377–87. http://dx.doi.org/10.1128/jb.00999-06.
Moreau, Hervé, Gwenael Piganeau, Yves Desdevises, Richard Cooke, Evelyne Derelle, and Nigel Grimsley. "Marine Prasinovirus Genomes Show Low Evolutionary Divergence and Acquisition of Protein Metabolism Genes by Horizontal Gene Transfer." Journal of Virology 84, no. 24 (September 22, 2010): 12555–63. http://dx.doi.org/10.1128/jvi.01123-10.
Hofstatter, Paulo G., Alexander K. Tice, Seungho Kang, Matthew W. Brown, and Daniel J. G. Lahr. "Evolution of bacterial recombinase A ( recA ) in eukaryotes explained by addition of genomic data of key microbial lineages." Proceedings of the Royal Society B: Biological Sciences 283, no. 1840 (October 12, 2016): 20161453. http://dx.doi.org/10.1098/rspb.2016.1453.
Chen, Wen-Ming, Lionel Moulin, Cyril Bontemps, Peter Vandamme, Gilles Béna, and Catherine Boivin-Masson. "Legume Symbiotic Nitrogen Fixation byβ-Proteobacteria Is Widespread inNature." Journal of Bacteriology 185, no. 24 (December 15, 2003): 7266–72. http://dx.doi.org/10.1128/jb.185.24.7266-7272.2003.
Sorhannus, Ulf. "Evolution of Type II Antifreeze Protein Genes in Teleost Fish: A Complex Scenario Involving Lateral Gene Transfers and Episodic Directional Selection." Evolutionary Bioinformatics 8 (January 2012): EBO.S9976. http://dx.doi.org/10.4137/ebo.s9976.
Davies, Mark R., David J. McMillan, Gary H. Van Domselaar, Malcolm K. Jones, and Kadaba S. Sriprakash. "Phage 3396 from a Streptococcus dysgalactiae subsp. equisimilis Pathovar May Have Its Origins in Streptococcus pyogenes." Journal of Bacteriology 189, no. 7 (January 26, 2007): 2646–52. http://dx.doi.org/10.1128/jb.01590-06.
Kenarkoohi, Azra, Amir Abdoli, Arman Rostamzad, Mahmoud Rashnavadi, Razi Naserifar, Jahangir Abdi, Morteza Shams, et al. "Presence of CRISPR CAS-Like Sequences as a Proposed Mechanism for Horizontal Genetic Exchanges between Trichomonas vaginalis and Its Associated Virus: A Comparative Genomic Analysis with the First Report of a Putative CRISPR CAS Structures in Eukaryotic Cells." BioMed Research International 2023 (November 27, 2023): 1–13. http://dx.doi.org/10.1155/2023/8069559.
Coombs, J. M., and T. Barkay. "New Findings on Evolution of Metal Homeostasis Genes: Evidence from Comparative Genome Analysis of Bacteria and Archaea." Applied and Environmental Microbiology 71, no. 11 (November 2005): 7083–91. http://dx.doi.org/10.1128/aem.71.11.7083-7091.2005.
Dvornyk, Volodymyr. "Evolution of the Circadian Clock Mechanism in Prokaryotes." Israel Journal of Ecology and Evolution 52, no. 3-4 (April 12, 2006): 343–57. http://dx.doi.org/10.1560/ijee_52_3-4_343.
LAM, WINNIE W. M., KEITH C. C. CHAN, DAVID K. Y. CHIU, and ANDREW K. C. WONG. "A GRAPH-BASED ALGORITHM FOR MINING MULTI-LEVEL PATTERNS IN GENOMIC DATA." Journal of Bioinformatics and Computational Biology 08, no. 05 (October 2010): 789–807. http://dx.doi.org/10.1142/s0219720010005002.
Liu, Yuchen, Robert H. White, and William B. Whitman. "Methanococci Use the Diaminopimelate Aminotransferase (DapL) Pathway for Lysine Biosynthesis." Journal of Bacteriology 192, no. 13 (April 23, 2010): 3304–10. http://dx.doi.org/10.1128/jb.00172-10.
Falkowski, Paul G., and Linda V. Godfrey. "Electrons, life and the evolution of Earth's oxygen cycle." Philosophical Transactions of the Royal Society B: Biological Sciences 363, no. 1504 (May 16, 2008): 2705–16. http://dx.doi.org/10.1098/rstb.2008.0054.
Zhaxybayeva, Olga, and W. Ford Doolittle. "Lateral gene transfer." Current Biology 21, no. 7 (April 2011): R242—R246. http://dx.doi.org/10.1016/j.cub.2011.01.045.