Academic literature on the topic 'Jarrah Diseases and pests Western Australia'

Subterranean clover (Trifolium subterraneum L.) is the most widely sown pasture legume in southern Australia and resistance to important diseases and pests has been a major plant-breeding objective. Kabatiella caulivora, the cause of clover scorch, is the most important foliar fungal pathogen, and several cultivars have been developed with resistance to both known races. Screening of advanced breeding lines has been conducted to prevent release of cultivars with high susceptibility to other important fungal foliar disease pathogens, including rust (Uromyces trifolii-repentis), powdery mildew (Oidium sp.), cercospora (Cercospora zebrina) and common leaf spot (Pseudopeziza trifolii). Several oomycete and fungal species cause root rots of subterranean clover, including Phytophthora clandestina, Pythium irregulare, Aphanomyces trifolii, Fusarium avenaceum and Rhizoctonia solani. Most breeding efforts have been devoted to resistance to P. clandestina, but the existence of different races has confounded selection. The most economically important virus diseases in subterranean clover pastures are Subterranean clover mottle virus and Bean yellow mosaic virus, while Subterranean clover stunt virus, Subterranean clover red leaf virus (local synonym for Soybean dwarf virus), Cucumber mosaic virus, Alfalfa mosaic virus, Clover yellow vein virus, Beet western yellows virus and Bean leaf roll virus also cause losses. Genotypic differences for resistance have been found to several of these fungal, oomycete and viral pathogens, highlighting the potential to develop cultivars with improved resistance. The most important pests of subterranean clover are redlegged earth mite (RLEM) (Halotydeus destructor), blue oat mite (Penthaleus major), blue-green aphid (Acyrthosiphon kondoi) and lucerne flea (Sminthurus viridis). New cultivars have been bred with increased RLEM cotyledon resistance, but limited selection has been conducted for resistance to other pests. Screening for disease and pest resistance has largely ceased, but recent molecular biology advances in subterranean clover provide a new platform for development of future cultivars with multiple resistances to important diseases and pests. However, this can only be realised if skills in pasture plant pathology, entomology, pre-breeding and plant breeding are maintained and adequately resourced. In particular, supporting phenotypic disease and pest resistance studies and understanding their significance is critical to enable molecular technology investments achieve practical outcomes and deliver subterranean clover cultivars with sufficient pathogen and pest resistance to ensure productive pastures across southern Australia.

Black spot disease on field pea (Pisum sativum) in Australia is generally caused by one or more of the four fungi: Mycosphaerella pinodes (anamorph Ascochyta pinodes), Phoma medicaginis var. pinodella (synonym Phoma pinodella), Ascochyta pisi, and Phoma koolunga (1,2,4). However, in 2010 from a field pea blackspot disease screening nursery at Medina, Western Australia, approximately 25% of isolates were a Phoma sp. that was morphologically different to Phoma spp. previously reported on field pea in Western Australia, while the remaining 75% of isolates were either M. pinodes or P. medicaginis var. pinodella. Single-spore isolations of 23 isolates of this Phoma sp. were made onto potato dextrose agar. A PCR-based assay with the TW81 and AB28 primers was used to amplify from the 3′ end of 16S rDNA, across ITS1, 5.8S rDNA, and ITS2 to the 5′ end of the 28S rDNA. The DNA products were sequenced and BLAST analyses were used to compare sequences with those in GenBank. In each case, the sequence had ≥99% nucleotide identity with the corresponding sequence in GenBank for P. herbarum. Isolates also showed morphological similarities to P. herbarum as described in other reports (e.g., 3). The relevant information for a representative isolate has been lodged in GenBank (Accession No. JN247437). The same primers were used by Davidson et al. (2) to identify P. koolunga, but none of our 23 isolates were P. koolunga. A conidial suspension of 107 conidia ml–1 from a single-spore culture was spray inoculated onto foliage of 10-day-old Pisum sativum cv. Dundale plants maintained under >90% relative humidity conditions for 72 h postinoculation. Symptoms evident by 11 days postinoculation consisted of pale brown lesions that were mostly 1.5 to 2 mm long and 1 to 1.5 mm wide. Approximately 50% of lesions showed a distinct chlorotic halo extending 1 to 2 mm outside the boundary of the lesion. P. herbarum was readily reisolated from infected foliage. A culture of this representative isolate has been lodged in the Western Australian Culture Collection Herbarium maintained at the Department of Agriculture and Food Western Australia (Accession No. WAC13499). Outside of Australia, P. herbarum, while generally considered a soilborne opportunistic pathogen, has been reported on a wide range of species, including field pea (3). Molecular analysis of historical isolates collected from field pea in Western Australia, mostly in the late 1980s, did not show any incidence of P. herbarum, despite this fungus being reported on alfalfa (Medicago sativa) and soybean (Glycine max) in Western Australia in 1985 (Australian Plant Pest Database). In Western Australia, this fungus has also been recorded on a Protea sp. in 1991 and on Arabian pea (Bituminaria bituminosa) in 2010 (Australian Plant Pest Database). To our knowledge, this is the first report of P. herbarum as a pathogen on field pea in Australia. These previous reports of P. herbarum on other hosts in Western Australia and the wide host range of P. herbarum together suggest the potential for this fungus to be a pathogen on a wider range of genera/species than field pea. References: (1) T. W. Bretag and M. Ramsey. Page 24 in: Compendium of Pea Diseases and Pests. 2nd ed. The American Phytopathologic Society, St Paul, MN, 2001. (2) J. A. Davidson et al. Mycologica 101:120, 2009. (3) G. L. Kinsey. Phoma herbarum. No 1501. IMI Descriptions of Fungi and Bacteria, 2002. (4) T. L. Peever et al. Mycologia 99:59, 2007.

Loss of perennial ryegrass (Lolium perenne L.) from the pasture within several years of sowing is a common problem in the higher rainfall (550–750 mm annual rainfall), summer-dry regions of south-eastern Australia. This pasture grass came to Australia from northern Europe, where it mostly grows from spring to autumn under mild climatic conditions. In contrast, the summers are generally much drier and hotter in this region of south-eastern Australia. This ‘mismatch’ between genotype and environment may be the fundamental reason for the poor persistence. There is hope that the recently released cultivars, Fitzroy and Avalon, selected and developed from naturalised ryegrass pastures in south-eastern Australia for improved winter growth and persistence will improve the performance of perennial ryegrass in the region. Soon-to-be released cultivars, developed from Mediterranean germplasm, may also bridge the climatic gap between where perennial ryegrass originated and where it is grown in south-eastern Australia. Other factors that influence perennial ryegrass persistence and productivity can be managed to some extent by the landholder. Nutrient status of the soil is important since perennial ryegrass performance improves relative to many other pasture species with increasing nitrogen and phosphorus supply. It appears that high soil exchangeable aluminium levels are also reducing ryegrass performance in parts of the region. The use of lime may resolve problems with high aluminium levels. Weeds that compete with perennial ryegrass become prevalent where bare patches occur in the pasture; they have the opportunity to invade pastures at the opening rains each year. Maintaining some herbage cover over summer and autumn should reduce weed establishment. Diseases of ryegrass are best managed by using resistant cultivars. Insect pests may be best managed by understanding and monitoring their biology to ensure timely application of pesticides and by manipulating herbage mass to alter feed sources and habitat. Grazing management has potential to improve perennial ryegrass performance as frequency and intensity of defoliation affect dry matter production and have been linked to ryegrass persistence, particularly under moisture deficit and high temperature stress. There is some disagreement as to the merit of rotational stocking with sheep, since the results of grazing experiments vary markedly depending on the rotational strategy used, climate, timing of the opening rains, stock class and supplementary feeding policy. We conclude that flexibility of grazing management strategies is important. These strategies should be able to be varied during the year depending on climatic conditions, herbage mass, and plant physiology and stock requirements. Two grazing strategies that show potential are a short rest from grazing the pasture at the opening rains until the pasture has gained some leaf area, in years when the opening rains are late. The second strategy is to allow ryegrass to flower late in the season, preventing new vegetative growth, and perhaps allowing for tiller buds to be preserved in a dormant state over the summer. An extension of this strategy would be to delay grazing until after the ryegrass seed heads have matured and seed has shed from the inflorescences. This has the potential to increase ryegrass density in the following growing season from seedling recruitment. A number of research opportunities have been identified from this review for improving ryegrass persistence. One area would be to investigate the potential for using grazing management to allow late development of ryegrass seed heads to preserve tiller buds in a dormant state over the summer. Another option is to investigate the potential, and subsequently develop grazing procedures, to allow seed maturation and recruitment of ryegrass seedlings after the autumn rains.

The Antipodes have been amongst the safest places on the planet during the Covid-19 pandemic. The governments of Australia and New Zealand (national, state, and territory governments) have acted promptly, decisively, and cohesively in closing borders, quarantining incoming returnees, instigating rigorous contact tracing and extensive testing, social distancing, hand washing, masks, and occasional lockdowns. Antipodean governments and populations have long experience of awareness and compliance with biosecurity issues. Isolation and distance have long served to keep Australia and New Zealand free of many pests and diseases. Each Antipodean election held during the Covid-19 pandemic has returned the incumbent. During the first 14 months of the pandemic, six out of six incumbent governments facing elections during the Covid pandemic have been returned. Five returned incumbents were center-left while the sixth was center-right. Four of the elections have rewarded the incumbent government with an increased majority, the Northern Territory election returned a reduced majority, and the Tasmanian election returned the status quo with the narrowest of majorities maintained. The New Zealand election returned the Labor government to power in their own right and released them from the coalition. The Western Australian election saw Labor returned with a landslide result with an unprecedented, win of 53 out of 59 seats (90% of seats). The object of the present paper is to report the outcomes of the six antipodean elections conducted during the Covid-19 pandemic (to date) and to reflect on the Covid-safe effect on them if any.

The south-west of Western Australia has a Mediterranean climate and flora endemic to this area, including the keystone species, jarrah (Eucalyptus marginata), have adapted to the droughted summer conditions. The introduction of an exotic soil borne pathogen, Phytophthora cinnamomi, has challenged the survival of this and many other species. The expectation might be that plants stressed by drought are more susceptible to disease and this study examined the development of disease caused by P. cinnamomi in E. marginata and the significance of water status to that development. Seedlings of E. marginata, clonal plants resistant to P. cinnamomi and clonal plants susceptible to P. cinnamomi, were subjected to different watering regimes in a number of field and glasshouse experiments. To determine the level of drought stress that could be imposed on container-grown E. marginata seedlings without killing them, a preliminary experiment progressively lowered the moisture levels of the substrate in their containers, until the plants reached wilting point, at which time moisture was restored to a predetermined droughted level and the process repeated. With each subsequent droughting the wilting point was lower until it was found that the seedlings could survive when only 5% of the moisture lost from container capacity to wilting point was restored. No deaths had occurred after seedlings had been maintained at this low level for 14 days (Chapter 2). Based on these findings, the level of droughting maintained in all experiments conducted under controlled glasshouse conditions was 10% restoration. After testing the appropriateness of underbark inoculation, and a zoospore inoculation method for which no wounding was necessary, a new, non-invasive stem inoculation technique was developed. Stems were moistened in a pre-treatment, then agar plugs colonized with P. cinnamomi mycelium were held against the stem with wads of wet cotton wool and bound in place with tape. This technique resulted in a high proportion of infection in E. marginata (Chapter 4) without the need for underbark inoculation or the use of zoospores (Chapter 3). It was successfully used in a large field trial in a rehabilitated bauxite mine site with 2-year-old E. marginata clonal plants, resistant to P. cinnamomi (Chapter 5). Inoculation was in late spring after the winter and spring rainfall. This timing was to allow comparison of disease development in stressed plants under normal droughted summer conditions compared with itsdevelopment in non-stressed, irrigated plants. However, two months after inoculation, the area was deluged with unseasonal and abnormally heavy summer rainfall, negating any difference in the treatments and causing an outbreak of P. cinnamomi in the soil from an adjacent infested site. This resulted in the infection and death of some noninoculated control clones. Monitoring of the site continued for twelve months and the advance of P. cinnamomi at the site was mapped. To test the effect of drought on the expression of P. cinnamomi under more controlled conditions, a series of glasshouse experiments was set up that simulated two possible summer conditions; drought or drought followed by abnormally high summer rainfall. These experiments utilised E. marginata seedlings and clonal plants, some resistant and some susceptible to P. cinnamomi. Plants were inoculated with P. cinnamomi prior to or after droughting. Results were compared to those of control plants that had not experienced water deficit. In both seedlings and clonal plants, the greatest extent of colonization was found in plants which had experienced no water deficit. These results indicated that drought stress played a role in inhibiting the in planta development of P. cinnamomi in all genotypes (Chapter 8). This finding was consistent for both clones, susceptible and resistant to P. cinnamomi. Most recoveries were made from non-stressed clonal plants, resistant to P. cinnamomi (Chapter 6) and more colonization was found in non-stressed clonal plants, susceptible to P. cinnamomi (Chapter 7), than was recorded for droughted plants. The results of the field trial showed that P. cinnamomi was not recovered from some inoculated stems, which had obvious lesions, when segments were plated onto selective agar. This led to an intensive in vitro investigation into improved methods of recovery. Dark brown exudates from some segments of inoculated stems stained the surrounding agar onto which they were plated, suggesting the presence of phenolic compounds. Recovery of the pathogen from stems increased by about 10% when segments were first soaked in distilled water to leach out the phenolic compounds, then replated onto agar. Other recovery methods were also tested, including (1) baiting with Pimelea ferruginea leaves floated on the surface of water or soil filtrate, in which the infected stem segments were immersed and (2) the application of different light and temperature regimes. It was clearly shown that exudates from infected stems of field grown E. marginata inhibited the outgrowth of P. cinnamomi onto the agar. To counter the possible toxic effect that oxidized phenolics had on the growth of the P. cinnamomi, an antioxidant was added to the agar. P. cinnamomi was grown on media whichincorporated exudates from infected stems and different concentrations of ascorbic acid, with and without adjusted pH levels. There was a pronounced pH effect, with less growth on media with lower pH and no significant increase in growth of the mycelium with increased ascorbic acid concentration on pH adjusted agar (Chapter 9). The inhibitory effect of the exudates from the stem segments led to an investigation of the possibility that, if seedlings to be planted in the rehabilitation process could be pre-treated with phenolic compounds to render them more resistant, they may have an advantage when establishing in areas where there was a potential threat of P. cinnamomi. E. marginata seeds were germinated and the seedlings grown hydroponically in a constant temperature growth room. Different concentrations of synthetic catechol, a phenolic compound naturally occurring in E. marginata, were added to the nutrient solution. Roots remained immersed in the catechol solutions for three days, before being inoculated at the root tip with zoospores of P. cinnamomi. Roots in higher concentrations of catechol were less colonized than those in lower concentrations, indicating an increased resistance to the pathogen (Chapter 10). Further work is required to determine if seedlings treated before being planted in areas threatened by an outbreak of P. cinnamomi have a greater capacity for survival, and for how long the protection persists. The improved recovery of P. cinnamomi from infected plants is important for accurate assessment of the spread of the disease in an area and for the subsequent implementation of management strategies of containment and control. An outbreak of P. cinnamomi can impact on the revegetation of rehabilitated mine sites and the aetiology of the pathogen in mine sites needs to be more fully understood. The interaction of plant defences with the invasive pathogen has been examined in a range of environments in the field, the glasshouse, in a hydroponics system and in vitro. The results indicate that summer droughting increases the resistance of E. marginata to P. cinnamomi. However, more work is required to understand the mechanisms involved. The study also indicates that clones of E. marginata, selected as resistant to P. cinnamomi, are not resistant under all conditions and that environmental interactions should be further investigated. Lastly, for effective management strategies to be implemented it is critical that the pathogen can be confidently isolated from plants. It was shown that exudates from infected hosts inhibit the recovery of P. cinnamomi. Recovery methods that can overcome these inhibitory compounds are required. The findings invite further research into the complexity of host-pathogen relationships.

The objectives of the project were to develop an understanding of the disease dynamics caused by Phytophthora citricola in native plant communities in the south of Western Australia. Prior to 1983, the pathogen had only been reported twice from Australian forests. Since then, P. citricola has been extensively recorded from plant communities north and south of Perth, and is currently the second most frequently recovered Phytophthora species from the northern jarrah forest and the northern sandplains. The objectives were addressed by examining the biology, ecology and taxonomy of isolates of P. citricola local to the southwest. Examination of the intraspecific variation of P. citricola by isozyme analysis resolved three major electrophoretic subgroups (SG), and these were aligned with morphological and cultural variation within the species. One electrophoretic SG was confined to forested areas. This SG differed from other SGs in sporangial dimensions, growth rate on two media and in vitro sensitivity to phosphonate. A redescription of the species may be warranted. P. citricola was positively associated with two roads in the northern jarrah forest. Road surfaces were sampled, then soil overburden was removed and the surface of the concreted lateritic layer beneath was sampled. Isolation of P. citricola declined away from the road into the adjacent forest and was more frequently recovered from the caprock (up to 1 metre below soil surface) than from the soil surface. The most probable source of introduction was from infested soil on vehicles using the roads. Oospores were shown to be produced in two soils, a lateritic gravelly loam and sand, and in plants. In soil, the electrophoretic SG confined to the forest (loamy soil) produced only limited numbers of oospores in the sandy soil of the northern sandplain. The restriction of this SG to the forested areas is probably physiological, rather than limited dispersal, with the SG currently occupying the full extent of its range. Estimation of the relative persistence of oospores, zoospores and plant material colonised by P. citricola established that only oospores (either free in soil or in colonised plant material) were important in long tern survival in soil. Oospores were still viable after six months at two field sites, and after 18 months in soil in the laboratory. Phosphonate is currently the most promising method of control of Phytophthora induced disease in native plant cornmunites of the southwest. The efficacy of phosphonate against P. citricola was examined in vivo and in vitro against two SGs. Phosphonate successfully inhibited lesion growth of both SGs in vivo, but of only one electrophoretic subgroup in vitro. The ecological implications of infestation of native plant communities in the southwest of Australia are discussed.

The objectives of the project were to develop an understanding of the disease dynamics caused by Phytophthora citricola in native plant communities in the south of Western Australia. Prior to 1983, the pathogen had only been reported twice from Australian forests. Since then, P. citricola has been extensively recorded from plant communities north and south of Perth, and is currently the second most frequently recovered Phytophthora species from the northern jarrah forest and the northern sandplains. The objectives were addressed by examining the biology, ecology and taxonomy of isolates of P. citricola local to the southwest. Examination of the intraspecific variation of P. citricola by isozyme analysis resolved three major electrophoretic subgroups (SG), and these were aligned with morphological and cultural variation within the species. One electrophoretic SG was confined to forested areas. This SG differed from other SGs in sporangial dimensions, growth rate on two media and in vitro sensitivity to phosphonate. A redescription of the species may be warranted. P. citricola was positively associated with two roads in the northern jarrah forest. Road surfaces were sampled, then soil overburden was removed and the surface of the concreted lateritic layer beneath was sampled. Isolation of P. citricola declined away from the road into the adjacent forest and was more frequently recovered from the caprock (up to 1 metre below soil surface) than from the soil surface. The most probable source of introduction was from infested soil on vehicles using the roads. Oospores were shown to be produced in two soils, a lateritic gravelly loam and sand, and in plants. In soil, the electrophoretic SG confined to the forest (loamy soil) produced only limited numbers of oospores in the sandy soil of the northern sandplain. The restriction of this SG to the forested areas is probably physiological, rather than limited dispersal, with the SG currently occupying the full extent of its range. Estimation of the relative persistence of oospores, zoospores and plant material colonised by P. citricola established that only oospores (either free in soil or in colonised plant material) were important in long tern survival in soil. Oospores were still viable after six months at two field sites, and after 18 months in soil in the laboratory. Phosphonate is currently the most promising method of control of Phytophthora induced disease in native plant cornmunites of the southwest. The efficacy of phosphonate against P. citricola was examined in vivo and in vitro against two SGs. Phosphonate successfully inhibited lesion growth of both SGs in vivo, but of only one electrophoretic subgroup in vitro. The ecological implications of infestation of native plant communities in the southwest of Australia are discussed.

Downy mildew, caused by the biotrophic Oomycete Plasmopara viticola, is one of the most important diseases of grapevines world wide. It is particularly destructive in temperate viticultural regions that experience warm wet conditions during the vegetative growth of the vine (Wong et al., 2001). The disease is not normally a problem in mediterranean climates where the growing season tends to be hot and dry (Mullins et al., 1992; Sivasithamparam, 1993). Grape downy mildew is however a major disease in Australian viticulture (McLean et al., 1984; Magarey et al., 1991). Grape downy mildew was first reported in Europe in 1878 (Viennot-Bourgin, 1981). In Australia, it was recorded for the first time in 1917 at Rutherglen in Victoria (Vic) (de Castella, 1917). The first recorded outbreak of the disease in Western Australia (WA) occurred in 1997 in a small planting of vines in the far north of the state. In the subsequent year, it was detected in widespread commercial viticulture in the Swan Valley production area, near Perth (McKirdy et al., 1999). The pathogen has since been found in all grape growing regions of WA. Since its introduction into European vineyards in the 1880?s, P. viticola has become one of the world?s most investigated grapevine pathogens. Many aspects its basic biology however remain unknown (Wong et al., 2001). Due to the recent detection of P. viticola in WA, little is known of the nature of strains of the pathogen in the state and their response to local environmental conditions. Much of the research concerning the influence of environmental factors on the development of P. viticola has been conducted in Europe e.g. parts of France and Germany. Due to significant differences in climatic conditions and a shorter selection time on the pathogen in WA, much of the information described in European studies may not be directly applicable to the grape downy mildew disease situation in WA. The focus of this thesis was to examine epidemiological aspects of P. viticola in the mediterranean climate of WA. The environmental conditions that could favour the development of epidemics by strains of the pathogen that have been detected in the state were determined. The existence of P. viticola ecotypes and genetic variation among strains from WA and the Eastern states of Australia was also investigated.

Soil ecosystem is a living and dynamic environment, habitat of thousands of microbial species, animal organisms and plant roots, integrated all of them in the food webs, and performing vital functions like organic matter decomposition and nutrient cycling; soil is also where plant roots productivity represent the main and first trophic level (producers), the beginning of the soil food web and of thousands of biological interactions. Agroecosystems are modified ecosystems by man in which plant, animal and microorganisms biodiversity has been altered, and sometimes decreased to a minimum number of species. Plant diseases, including root diseases caused by soil-borne plant pathogens are important threats to crop yield and they causes relevant economic losses. Soil-borne plant pathogens and the diseases they produce can cause huge losses and even social and environmental changes, for instance the Irish famine caused by Phytophthora infestans (1845–1853), or the harmful ecological alterations in the jarrah forests of Western Australia affected by Phytophthora cinnamomi in the last 100 years. How can a root pathogen species increase its populations densities at epidemic levels? In wild ecosystems usually we expect the soil biodiversity (microbiome, nematodes, mycorrhiza, protozoa, worms, etc.) through the trophic webs and different interactions between soil species, are going to regulate each other and the pathogens populations, avoiding disease outbreaks. In agroecosystems where plant diseases and epidemics are frequent and destructive, soil-borne plant pathogens has been managed applying different strategies: chemical, cultural, biological agents and others; however so far, there is not enough knowledge about how important is soil biodiversity, mainly microbiome diversity and soil food webs structure and function in the management of root pathogens, in root and plant health, in healthy food production, and maybe more relevant in the conservation of soil as a natural resource and derived from it, the ecosystem services important for life in our planet.