Academic literature on the topic 'Hydrophobic clusters'
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Journal articles on the topic "Hydrophobic clusters"
Arunachalam, J., and N. Gautham. "Hydrophobic clusters in protein structures." Proteins: Structure, Function, and Bioinformatics 71, no. 4 (January 10, 2008): 2012–25. http://dx.doi.org/10.1002/prot.21881.
Full textXie, Xuan, and Chunfu Zhang. "Controllable Assembly of Hydrophobic Superparamagnetic Iron Oxide Nanoparticle with mPEG-PLA Copolymer and Its Effect on MR Transverse Relaxation Rate." Journal of Nanomaterials 2011 (2011): 1–7. http://dx.doi.org/10.1155/2011/152524.
Full textFeketeová, Linda, Paul Bertier, Thibaud Salbaing, Toshiyuki Azuma, Florent Calvo, Bernadette Farizon, Michel Farizon, and Tilmann D. Märk. "Impact of a hydrophobic ion on the early stage of atmospheric aerosol formation." Proceedings of the National Academy of Sciences 116, no. 45 (October 21, 2019): 22540–44. http://dx.doi.org/10.1073/pnas.1911136116.
Full textLesnikowski, Zbigniew J. "Boron Units as Pharmacophores - New Applications and Opportunities of Boron Cluster Chemistry." Collection of Czechoslovak Chemical Communications 72, no. 12 (2007): 1646–58. http://dx.doi.org/10.1135/cccc20071646.
Full textSakibaev, Farkhat, Marina Holyavka, Victoria Koroleva, and Valeriy Artyukhov. "Distribution of Charged and Hydrophobic Amino Acids on the Surfaces of Two Types of Beta-Fructosidase from Thermotoga Maritima." Chemistry Proceedings 2, no. 1 (November 9, 2020): 4. http://dx.doi.org/10.3390/eccs2020-07550.
Full textTavares, Marina Rodrigues, Kaplan Kirakci, Nikolay Kotov, Michal Pechar, Kamil Lang, Robert Pola, and Tomáš Etrych. "Octahedral Molybdenum Cluster-Based Nanomaterials for Potential Photodynamic Therapy." Nanomaterials 12, no. 19 (September 26, 2022): 3350. http://dx.doi.org/10.3390/nano12193350.
Full textNishigami, Hiroshi, Jiyoung Kang, Ryu-ichiro Terada, Hiori Kino, Kazuhiko Yamasaki, and Masaru Tateno. "Is it possible for short peptide composed of positively- and negatively-charged “hydrophilic” amino acid residue-clusters to form metastable “hydrophobic” packing?" Physical Chemistry Chemical Physics 21, no. 19 (2019): 9683–93. http://dx.doi.org/10.1039/c9cp00103d.
Full textGallo, Mariana, Simone Luti, Fabio Baroni, Ivan Baccelli, Eduardo Maffud Cilli, Costanza Cicchi, Manuela Leri, Alberto Spisni, Thelma A. Pertinhez, and Luigia Pazzagli. "Plant Defense Elicitation by the Hydrophobin Cerato-Ulmin and Correlation with Its Structural Features." International Journal of Molecular Sciences 24, no. 3 (January 23, 2023): 2251. http://dx.doi.org/10.3390/ijms24032251.
Full textCzaplewski, C. "Molecular simulation study of cooperativity in hydrophobic association: clusters of four hydrophobic particles." Biophysical Chemistry 105, no. 2-3 (September 2003): 339–59. http://dx.doi.org/10.1016/s0301-4622(03)00085-1.
Full textMatsumoto, H., E. Rozi Ismail, Y. Seki, and K. Soda. "3P031 Role of Hydrophobic Clusters in Protein Folding." Seibutsu Butsuri 45, supplement (2005): S211. http://dx.doi.org/10.2142/biophys.45.s211_3.
Full textDissertations / Theses on the topic "Hydrophobic clusters"
Lazar, Laurentiu. "Controlled aggregation of polymer latices and encapsulation of hydrophobic substances in polymer clusters." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1999. http://www.collectionscanada.ca/obj/s4/f2/dsk3/ftp04/nq35969.pdf.
Full textLe, Tuan Khanh. "Hydrophobic Cluster analysis : prédiction de structures secondaires à partir d'une séquence unique : implémentation de la procédure "Secondary Structure Prediction" (SSP)." Paris 6, 2003. http://www.theses.fr/2003PA066541.
Full textBruley, Apolline. "Exploitation de signatures des repliements protéiques pour décrire le continuum ordre/désordre au sein des protéomes." Electronic Thesis or Diss., Sorbonne université, 2022. http://www.theses.fr/2022SORUS474.
Full textA significant fraction of the proteomes remains unannotated, leaving inaccessible a part of the functional repertoire of life, including molecular innovations with therapeutic or environmental value. Lack of functional annotation is partly due to the limitations of the current approaches in detecting hidden relationships, or to specific features such as disorder. The aim of my PhD thesis was to develop methodological approaches based on the structural signatures of folded domains, in order to further characterize the protein sequences with unknown function even in absence of evolutionary information. First, I developed a scoring system in order to estimate the foldability potential of an amino acid sequence, based on its density in hydrophobic clusters, which mainly correspond to regular secondary structures. I disentangled the continuum between order and disorder, covering various states from extended conformations (random coils) to molten globules and characterize cases of conditional order. Next, I combined this scoring system with the AlphaFold2 (AF2) 3D structure predictions available for 21 reference proteomes. A large fraction of the amino acids with very low AF2 model confidence are included in non-foldable segments, supporting the quality of AF2 as a predictor of disorder. However, within each proteome, long segments with very low AF2 model confidence also exhibit characteristics of soluble, folded domains. This suggests hidden order (conditional or unconditional), which is undetected by AF2 due to lack of evolutionary information, or unrecorded folding patterns. Finally, using these tools, I made a preliminary exploration of unannotated proteins or regions, identified through the development and application of a new annotation workflow. Even though these sequences are enriched in disorder, an important part of them showcases soluble globular-like characteristics. These would make good candidates for further experimental validation and characterization. Moreover, the analysis of experimentally validated de novo genes allowed me to contribute to the still-open debate on the structural features of proteins encoded by these genes, enriched in disorder and displaying a great diversity of structura
Albeau, Karine. "Analyse à grande échelle des textures des séquences protéiques via l'approche Hydrophobic Cluster Analysis (HCA)." Phd thesis, Université de Versailles-Saint Quentin en Yvelines, 2005. http://tel.archives-ouvertes.fr/tel-00011139.
Full textDulin, Fabienne. "Exploration des caractéristiques tridimensionnelles des amas protéiques hydrophobes issus du formalisme "Hydrophobic Cluster Analysis" (HCA) : modélisation de formes oligomériques solubles du peptide Aβ impliqué dans la maladie d'Alzheimer, et identification d'un 'point chaud" commun à différentes protéines amyloïdes." Paris 6, 2006. http://www.theses.fr/2006PA066465.
Full textHennetin, Jérôme. "Texture hydrophobe HCA des séquences protéiques : regards sur les introns." Paris 7, 2003. http://www.theses.fr/2003PA077055.
Full textLevivier, Emilie. "Exploration des similitudes de séquences protéiques à haut niveau de divergence évolutive : perspectives de l'approche Hydrophobic Cluster Analysis (HCA)." Paris 7, 2003. http://www.theses.fr/2003PA077069.
Full textEudes, Richard. "Développements méthodologiques relatifs à l'attribution et à la prédiction des structures secondaires des protéines globulaires : classification structurale de mutations du transporteur CFTR, observées chez des patients atteints de mucoviscidose." Paris 6, 2006. http://www.theses.fr/2006PA066170.
Full textSchümmer, Tobias [Verfasser], Thomas [Akademischer Betreuer] Kiefhaber, and Michael [Akademischer Betreuer] Groll. "The role of a hydrophobic cluster for stability and assembly kinetics of the trimeric foldon domain from T4 fibritin / Tobias Schümmer. Gutachter: Michael Groll ; Thomas Kiefhaber. Betreuer: Thomas Kiefhaber." München : Universitätsbibliothek der TU München, 2011. http://d-nb.info/1056936428/34.
Full textKantari, Chahrazade. "Rôle pro-inflammatoire de la protéinase 3 membranaire du neutrophile : identification de la phospholipide scramblase 1 comme nouveau partenaire moléculaire et du site d’interaction avec la membrane." Paris 6, 2008. http://www.theses.fr/2008PA066171.
Full textBook chapters on the topic "Hydrophobic clusters"
Azevedo, Paulo J., Cândida G. Silva, J. Rui Rodrigues, Nuno Loureiro-Ferreira, and Rui M. M. Brito. "Detection of Hydrophobic Clusters in Molecular Dynamics Protein Unfolding Simulations Using Association Rules." In Biological and Medical Data Analysis, 329–37. Berlin, Heidelberg: Springer Berlin Heidelberg, 2005. http://dx.doi.org/10.1007/11573067_33.
Full textVanderheeren, G., and I. Hanssens. "The Perception of Hydrophobic Clusters in the Native and Partially Unfolded States of a Protein." In Proteome and Protein Analysis, 211–24. Berlin, Heidelberg: Springer Berlin Heidelberg, 2000. http://dx.doi.org/10.1007/978-3-642-59631-5_15.
Full textNaseem, Z., K. Sagoe-Crentsil, and W. Duan. "Graphene-Induced Nano- and Microscale Modification of Polymer Structures in Cement Composite Systems." In Lecture Notes in Civil Engineering, 527–33. Singapore: Springer Nature Singapore, 2023. http://dx.doi.org/10.1007/978-981-99-3330-3_56.
Full textKonat, R. K., S. Golic Grdadolnik, W. Schmitt, and H. Kessler. "Conformational studies on cyclic tetrapeptides: Hydrophobic cluster formation." In Peptides 1994, 521–22. Dordrecht: Springer Netherlands, 1995. http://dx.doi.org/10.1007/978-94-011-1468-4_235.
Full textAtkins, Peter, George Ratcliffe, Mark Wormald, and Julio de Paula. "Entropy in biology." In Physical Chemistry for the Life Sciences. Oxford University Press, 2023. http://dx.doi.org/10.1093/hesc/9780198830108.003.0009.
Full textBunker, Bruce C., and William H. Casey. "Solvated Ions in Water." In The Aqueous Chemistry of Oxides. Oxford University Press, 2016. http://dx.doi.org/10.1093/oso/9780199384259.003.0009.
Full textSemertzidis, Michel T., Etienne Thoreau, Anne Tasso, Bernard Henrissat, Isabelle Callebaut, and Jean Paul Mornon. "Visualization of Protein Sequences Using the Two-Dimensional Hydrophobic Cluster Analysis Method." In Visualizing Biological Information, 129–44. WORLD SCIENTIFIC, 1995. http://dx.doi.org/10.1142/9789812832054_0012.
Full textKoskela, Heikki O., Tuomas A. Selander, and Anne M. Lätti. "Cluster Analysis in 975 Patients with Current Cough Identifies a Phenotype with Several Cough Triggers, Many Background Disorders, and Low Quality of Life." In Statistical Inference for Ergodic Algorithmic Model (EAM), Applied to Hydrophobic Hydration Processes. Vide Leaf, Hyderabad, 2021. http://dx.doi.org/10.37247/pacard.1.21.6.
Full textConference papers on the topic "Hydrophobic clusters"
Chen, Peng, Chunmei Liu, Legand Burge, Mahmood Mohammad, Bill Southerland, and Clay Gloster. "Prediction of Inter-residue Contact Clusters from Hydrophobic Cores." In 2008 Seventh International Conference on Machine Learning and Applications. IEEE, 2008. http://dx.doi.org/10.1109/icmla.2008.74.
Full textChakraborty, Indrani, Bhagyashree A. Chalke, Smita Gohil, and Pushan Ayyub. "Self-assembly of metal nanorod arrays into hierarchical clusters and evolution of their hydrophobic behaviour." In PROCEEDING OF INTERNATIONAL CONFERENCE ON RECENT TRENDS IN APPLIED PHYSICS AND MATERIAL SCIENCE: RAM 2013. AIP, 2013. http://dx.doi.org/10.1063/1.4810166.
Full textChen, Peng-Yu, Wei-Hui Chen, and Che-Wun Hong. "Nanofludic Analysis on Methanol Crossover of Direct Methanol Fuel Cells." In ASME 2008 First International Conference on Micro/Nanoscale Heat Transfer. ASMEDC, 2008. http://dx.doi.org/10.1115/mnht2008-52095.
Full textSuciu, Claudiu Valentin. "Thermal Effects on Nano-Energy Absorption Systems (Nano-EAS)." In 2008 Second International Conference on Integration and Commercialization of Micro and Nanosystems. ASMEDC, 2008. http://dx.doi.org/10.1115/micronano2008-70039.
Full textHanda, M., K. Titani, K. Takio, and Z. M. Ruggeri. "CHARACTERIZATION OF THE VON WILLEBRAND FACTOR-BINDING DOMAIN OF PLATELET MEMBRANE GLYCOPROTEIN Ib." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1642925.
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