Journal articles on the topic 'Genomic analysi'
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Barazandeh, A., M. R. Mohammadabadi, M. Ghaderi-Zefrehei, and H. Nezamabadi-pour. "Genome-wide analysis of CpG islands in some livestock genomes and their relationship with genomic features." Czech Journal of Animal Science 61, No. 11 (November 17, 2016): 487–95. http://dx.doi.org/10.17221/78/2015-cjas.
Full textCaulfield, Mark. "6 Translating genomics for clinical benefit." Postgraduate Medical Journal 95, no. 1130 (November 21, 2019): 686.3–686. http://dx.doi.org/10.1136/postgradmedj-2019-fpm.6.
Full textSurrey, Lea F., Minjie Luo, Fengqi Chang, and Marilyn M. Li. "The Genomic Era of Clinical Oncology: Integrated Genomic Analysis for Precision Cancer Care." Cytogenetic and Genome Research 150, no. 3-4 (2016): 162–75. http://dx.doi.org/10.1159/000454655.
Full textBertelli, Claire, Keith E. Tilley, and Fiona S. L. Brinkman. "Microbial genomic island discovery, visualization and analysis." Briefings in Bioinformatics 20, no. 5 (June 3, 2018): 1685–98. http://dx.doi.org/10.1093/bib/bby042.
Full textKerdprasop, Nittaya, and Kittisak Kerdprasop. "Constraint-Based System for Genomic Analysis." International Journal of Information and Education Technology 5, no. 2 (2015): 119–23. http://dx.doi.org/10.7763/ijiet.2015.v5.487.
Full textBarron-Montenegro, Rocío, Rodrigo García, Fernando Dueñas, Dácil Rivera, Andrés Opazo-Capurro, Stephen Erickson, and Andrea I. Moreno-Switt. "Comparative Analysis of Felixounavirus Genomes Including Two New Members of the Genus That Infect Salmonella Infantis." Antibiotics 10, no. 7 (July 2, 2021): 806. http://dx.doi.org/10.3390/antibiotics10070806.
Full textBlanca, Léo, Eugène Christo-Foroux, Sofia Rigou, and Matthieu Legendre. "Comparative Analysis of the Circular and Highly Asymmetrical Marseilleviridae Genomes." Viruses 12, no. 11 (November 7, 2020): 1270. http://dx.doi.org/10.3390/v12111270.
Full textDhanapal, Arun Prabhu, and Mahalingam Govindaraj. "Unlimited Thirst for Genome Sequencing, Data Interpretation, and Database Usage in Genomic Era: The Road towards Fast-Track Crop Plant Improvement." Genetics Research International 2015 (March 19, 2015): 1–15. http://dx.doi.org/10.1155/2015/684321.
Full textVilen, Heikki, Juha-Matti Aalto, Anna Kassinen, Lars Paulin, and Harri Savilahti. "A Direct Transposon Insertion Tool for Modification and Functional Analysis of Viral Genomes." Journal of Virology 77, no. 1 (January 1, 2003): 123–34. http://dx.doi.org/10.1128/jvi.77.1.123-134.2003.
Full textSalamon, Hugh, Midori Kato-Maeda, Peter M. Small, Jorg Drenkow, and Thomas R. Gingeras. "Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data." Genome Research 10, no. 12 (November 21, 2000): 2044–54. http://dx.doi.org/10.1101/gr.152900.
Full textValentin, Guignon, Toure Abdel, Droc Gaëtan, Dufayard Jean-François, Conte Matthieu, and Rouard Mathieu. "GreenPhylDB v5: a comparative pangenomic database for plant genomes." Nucleic Acids Research 49, no. D1 (November 25, 2020): D1464—D1471. http://dx.doi.org/10.1093/nar/gkaa1068.
Full textGalperin, Michael Y., David M. Kristensen, Kira S. Makarova, Yuri I. Wolf, and Eugene V. Koonin. "Microbial genome analysis: the COG approach." Briefings in Bioinformatics 20, no. 4 (September 14, 2017): 1063–70. http://dx.doi.org/10.1093/bib/bbx117.
Full textUlaszewski, Bartosz, Joanna Meger, and Jaroslaw Burczyk. "Comparative Analysis of SNP Discovery and Genotyping in Fagus sylvatica L. and Quercus robur L. Using RADseq, GBS, and ddRAD Methods." Forests 12, no. 2 (February 15, 2021): 222. http://dx.doi.org/10.3390/f12020222.
Full textPronozin, A. Yu, M. K. Bragina, and E. A. Salina. "Crop pangenomes." Vavilov Journal of Genetics and Breeding 25, no. 1 (March 16, 2021): 57–63. http://dx.doi.org/10.18699/vj21.007.
Full textCarpentieri, Bruno. "Compression of Next-Generation Sequencing Data and of DNA Digital Files." Algorithms 13, no. 6 (June 24, 2020): 151. http://dx.doi.org/10.3390/a13060151.
Full textBaumler, David J., Lois M. Banta, Kai F. Hung, Jodi A. Schwarz, Eric L. Cabot, Jeremy D. Glasner, and Nicole T. Perna. "Using Comparative Genomics for Inquiry-Based Learning to Dissect Virulence of Escherichia coli O157:H7 and Yersinia pestis." CBE—Life Sciences Education 11, no. 1 (March 2012): 81–93. http://dx.doi.org/10.1187/cbe.10-04-0057.
Full textAlam, Intikhab, Mike Cornell, Darren M. Soanes, Cornelia Hedeler, Han Min Wong, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver, and Norman W. Paton. "A Methodology for Comparative Functional Genomics." Journal of Integrative Bioinformatics 4, no. 3 (December 1, 2007): 112–22. http://dx.doi.org/10.1515/jib-2007-69.
Full textJung, Jaejoon, Eugene L. Madsen, Che Ok Jeon, and Woojun Park. "Comparative Genomic Analysis of Acinetobacter oleivorans DR1 To Determine Strain-Specific Genomic Regions and Gentisate Biodegradation." Applied and Environmental Microbiology 77, no. 20 (August 19, 2011): 7418–24. http://dx.doi.org/10.1128/aem.05231-11.
Full textFlanagan, Keith, Robert Stevens, Matthew Pocock, Pete Lee, and Anil Wipat. "Ontology for Genome Comparison and Genomic Rearrangements." Comparative and Functional Genomics 5, no. 6-7 (2004): 537–44. http://dx.doi.org/10.1002/cfg.436.
Full textWalkowiak, Sean, Liangliang Gao, Cecile Monat, Georg Haberer, Mulualem T. Kassa, Jemima Brinton, Ricardo H. Ramirez-Gonzalez, et al. "Multiple wheat genomes reveal global variation in modern breeding." Nature 588, no. 7837 (November 25, 2020): 277–83. http://dx.doi.org/10.1038/s41586-020-2961-x.
Full textYelick, Katherine, Aydın Buluç, Muaaz Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, et al. "The parallelism motifs of genomic data analysis." Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 378, no. 2166 (January 20, 2020): 20190394. http://dx.doi.org/10.1098/rsta.2019.0394.
Full textDodeweerd, Anne-Marie van, Caroline R. Hall, Elisabeth G. Bent, Samantha J. Johnson, Michael W. Bevan, and Ian Bancroft. "Identification and analysis of homoeologous segments of the genomes of rice and Arabidopsis thaliana." Genome 42, no. 5 (October 1, 1999): 887–92. http://dx.doi.org/10.1139/g99-033.
Full textBasarab, John A., Changxi Li, Paul Stothard, Carolyn J. Fitzsimmons, and Graham Plastow. "168 Use of Genomic Tools to Improve Production Efficiency, Health Resilience and Carbon Footprint of Beef Production." Journal of Animal Science 99, Supplement_3 (October 8, 2021): 90–91. http://dx.doi.org/10.1093/jas/skab235.161.
Full textYamamoto, Kimiko, Seigo Kuwazaki, Kazumi Tsukamoto, Satoshi Akanuma, Yoshitaka Suetsugu, Junko Narukawa, Kazuei Mita, Toshio Ohtani, and Shigeru Sugiyama. "1P465 Novel Genomic Analysis Tool based on the Scanning Probe Microscope(22. Genome biology,Poster Session,Abstract,Meeting Program of EABS &BSJ 2006)." Seibutsu Butsuri 46, supplement2 (2006): S263. http://dx.doi.org/10.2142/biophys.46.s263_1.
Full textShaffer, Christopher D., Consuelo Alvarez, Cheryl Bailey, Daron Barnard, Satish Bhalla, Chitra Chandrasekaran, Vidya Chandrasekaran, et al. "The Genomics Education Partnership: Successful Integration of Research into Laboratory Classes at a Diverse Group of Undergraduate Institutions." CBE—Life Sciences Education 9, no. 1 (March 2010): 55–69. http://dx.doi.org/10.1187/09-11-0087.
Full textKataoka, Kosuke, Yuki Togawa, Ryuto Sanno, Toru Asahi, and Kei Yura. "Dissecting cricket genomes for the advancement of entomology and entomophagy." Biophysical Reviews 14, no. 1 (January 21, 2022): 75–97. http://dx.doi.org/10.1007/s12551-021-00924-4.
Full textUtturkar, Sagar M., W. Nathan Cude, Michael S. Robeson, Zamin K. Yang, Dawn M. Klingeman, Miriam L. Land, Steve L. Allman, et al. "Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis." Applied and Environmental Microbiology 82, no. 18 (July 15, 2016): 5698–708. http://dx.doi.org/10.1128/aem.01285-16.
Full textGiuffra, Elisabetta, and Christopher K. Tuggle. "Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap." Annual Review of Animal Biosciences 7, no. 1 (February 15, 2019): 65–88. http://dx.doi.org/10.1146/annurev-animal-020518-114913.
Full textJian, Ming-Jr, Hsing-Yi Chung, Chih-Kai Chang, Shan-Shan Hsieh, Jung-Chung Lin, Kuo-Ming Yeh, Chien-Wen Chen, et al. "Genomic analysis of early transmissibility assessment of the D614G mutant strain of SARS-CoV-2 in travelers returning to Taiwan from the United States of America." PeerJ 9 (September 2, 2021): e11991. http://dx.doi.org/10.7717/peerj.11991.
Full textLi, Xiaoqin, Yunjuan Zuo, Xinxin Zhu, Shuai Liao, and Jinshuang Ma. "Complete Chloroplast Genomes and Comparative Analysis of Sequences Evolution among Seven Aristolochia (Aristolochiaceae) Medicinal Species." International Journal of Molecular Sciences 20, no. 5 (February 28, 2019): 1045. http://dx.doi.org/10.3390/ijms20051045.
Full textKhan, Amna Komal, Humera Kausar, Syyada Samra Jaferi, Samantha Drouet, Christophe Hano, Bilal Haider Abbasi, and Sumaira Anjum. "An Insight into the Algal Evolution and Genomics." Biomolecules 10, no. 11 (November 6, 2020): 1524. http://dx.doi.org/10.3390/biom10111524.
Full textTang, Deyou, Yucheng Li, Daqiang Tan, Juan Fu, Yelei Tang, Jiabin Lin, Rong Zhao, Hongli Du, and Zhongming Zhao. "KCOSS: an ultra-fast k-mer counter for assembled genome analysis." Bioinformatics 38, no. 4 (November 26, 2021): 933–40. http://dx.doi.org/10.1093/bioinformatics/btab797.
Full textSahl, Jason W., Hans Steinsland, Julia C. Redman, Samuel V. Angiuoli, James P. Nataro, Halvor Sommerfelt, and David A. Rasko. "A Comparative Genomic Analysis of Diverse Clonal Types of EnterotoxigenicEscherichia coliReveals Pathovar-Specific Conservation." Infection and Immunity 79, no. 2 (November 15, 2010): 950–60. http://dx.doi.org/10.1128/iai.00932-10.
Full textHolmer, Rens, Robin van Velzen, Rene Geurts, Ton Bisseling, Dick de Ridder, and Sandra Smit. "GeneNoteBook, a collaborative notebook for comparative genomics." Bioinformatics 35, no. 22 (June 14, 2019): 4779–81. http://dx.doi.org/10.1093/bioinformatics/btz491.
Full textOliveira, Guilherme, Nilton B. Rodrigues, Alvaro J. Romanha, and Diana Bahia. "Genome and genomics of schistosomes." Canadian Journal of Zoology 82, no. 2 (February 1, 2004): 375–90. http://dx.doi.org/10.1139/z03-220.
Full textKiryanova, O. Yu, I. I. Kiryanov, B. R. Kuluev, R. R. Garafutdinov, A. V. Chemeris, and I. M. Gubaydullin. "Multiplex in silico RAPD-Analysis for Genome Barcoding." Mathematical Biology and Bioinformatics 17, no. 2 (September 27, 2022): 208–29. http://dx.doi.org/10.17537/2022.17.208.
Full textPeng, Qin, Yihui Yuan, Meiying Gao, Xupeng Chen, Biao Liu, Pengming Liu, Yan Wu, and Dandan Wu. "Genomic characteristics and comparative genomics analysis of Penicillium chrysogenum KF-25." BMC Genomics 15, no. 1 (2014): 144. http://dx.doi.org/10.1186/1471-2164-15-144.
Full textLiu, J. "Genomic resources and their informatic analysis for comparative genomics in catfish." Aquaculture 272 (2007): S286. http://dx.doi.org/10.1016/j.aquaculture.2007.07.128.
Full textKishii, M., R. R. C. Wang, and H. Tsujimoto. "GISH analysis revealed new aspect of genomic constitution of Thinopyrum intermedium." Czech Journal of Genetics and Plant Breeding 41, Special Issue (July 31, 2012): 92–95. http://dx.doi.org/10.17221/6143-cjgpb.
Full textLewin, Andrew C., Lyndon M. Coghill, Melanie Mironovich, Chin-Chi Liu, Renee T. Carter, and Eric C. Ledbetter. "Phylogenomic Analysis of Global Isolates of Canid Alphaherpesvirus 1." Viruses 12, no. 12 (December 10, 2020): 1421. http://dx.doi.org/10.3390/v12121421.
Full textKulyyassov, Arman, and Ruslan Kalendar. "In Silico Estimation of the Abundance and Phylogenetic Significance of the Composite Oct4-Sox2 Binding Motifs within a Wide Range of Species." Data 5, no. 4 (November 29, 2020): 111. http://dx.doi.org/10.3390/data5040111.
Full textLópez-Pérez, Mario, Jose M. Haro-Moreno, Jaime Iranzo, and Francisco Rodriguez-Valera. "Genomes of the “Candidatus Actinomarinales” Order: Highly Streamlined Marine Epipelagic Actinobacteria." mSystems 5, no. 6 (December 15, 2020): e01041-20. http://dx.doi.org/10.1128/msystems.01041-20.
Full textPeterson, Daniel, Tang Li, Ana M. Calvo, and Yanbin Yin. "Categorization of Orthologous Gene Clusters in 92 Ascomycota Genomes Reveals Functions Important for Phytopathogenicity." Journal of Fungi 7, no. 5 (April 27, 2021): 337. http://dx.doi.org/10.3390/jof7050337.
Full textXu, Zhuofei, Xiabing Chen, Lu Li, Tingting Li, Shengyue Wang, Huanchun Chen, and Rui Zhou. "Comparative Genomic Characterization of Actinobacillus pleuropneumoniae." Journal of Bacteriology 192, no. 21 (August 27, 2010): 5625–36. http://dx.doi.org/10.1128/jb.00535-10.
Full textRutz, Dominik, David Frasson, Martin Sievers, Jochen Blom, Fabio Rezzonico, Joël F. Pothier, and Theo H. M. Smits. "Comparative Genomic Analysis of the Biotechnological Potential of the Novel Species Pseudomonas wadenswilerensis CCOS 864T and Pseudomonas reidholzensis CCOS 865T." Diversity 11, no. 11 (October 28, 2019): 204. http://dx.doi.org/10.3390/d11110204.
Full textGillespie, Joseph J., Alice R. Wattam, Stephen A. Cammer, Joseph L. Gabbard, Maulik P. Shukla, Oral Dalay, Timothy Driscoll, et al. "PATRIC: the Comprehensive Bacterial Bioinformatics Resource with a Focus on Human Pathogenic Species." Infection and Immunity 79, no. 11 (September 6, 2011): 4286–98. http://dx.doi.org/10.1128/iai.00207-11.
Full textO'Connor, Brian D., Denis Yuen, Vincent Chung, Andrew G. Duncan, Xiang Kun Liu, Janice Patricia, Benedict Paten, Lincoln Stein, and Vincent Ferretti. "The Dockstore: enabling modular, community-focused sharing of Docker-based genomics tools and workflows." F1000Research 6 (January 18, 2017): 52. http://dx.doi.org/10.12688/f1000research.10137.1.
Full textDaniels, Rachel F., Stephen F. Schaffner, Edward A. Wenger, Joshua L. Proctor, Hsiao-Han Chang, Wesley Wong, Nicholas Baro, et al. "Modeling malaria genomics reveals transmission decline and rebound in Senegal." Proceedings of the National Academy of Sciences 112, no. 22 (May 4, 2015): 7067–72. http://dx.doi.org/10.1073/pnas.1505691112.
Full textSilva de Oliveira, Mônica, Jorianne Thyeska Castro Alves, Pablo Henrique Caracciolo Gomes de Sá, and Adonney Allan de Oliveira Veras. "PAN2HGENE–tool for comparative analysis and identifying new gene products." PLOS ONE 16, no. 5 (May 28, 2021): e0252414. http://dx.doi.org/10.1371/journal.pone.0252414.
Full textOsipowski, Paweł, Magdalena Pawełkowicz, Michał Wojcieszek, Agnieszka Skarzyńska, Zbigniew Przybecki, and Wojciech Pląder. "A high-quality cucumber genome assembly enhances computational comparative genomics." Molecular Genetics and Genomics 295, no. 1 (October 16, 2019): 177–93. http://dx.doi.org/10.1007/s00438-019-01614-3.
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