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Journal articles on the topic 'Gene mapping'

Author: Grafiati

Published: 4 June 2021

Last updated: 1 August 2024

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1

Ehrhart, Friederike, Jonathan Melius, Elisa Cirillo, Martina Kutmon, Egon L. Willighagen, Susan L. Coort, Leopold M. G. Curfs, and Chris T. Evelo. "Providing gene-to-variant and variant-to-gene database identifier mappings to use with BridgeDb mapping services." F1000Research 7 (September 3, 2018): 1390. http://dx.doi.org/10.12688/f1000research.15708.1.

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Database identifier mapping services are important to make database information interoperable. BridgeDb offers such a service. Available mapping for BridgeDb link 1. genes and gene products identifiers, 2. metabolite identifiers and InChI structure description, and 3. identifiers for biochemical reactions and interactions between multiple resources that use such IDs while the mappings are obtained from multiple sources. In this study we created BridgeDb mapping databases for selections of genes-to-variants (and variants-to-genes) based on the variants described in Ensembl. Moreover, we demonstrated the use of these mappings in different software tools like R, PathVisio, Cytoscape and a local installation using Docker. The variant mapping databases are now described on the BridgeDb website and are available from the BridgeDb mapping database repository and updated according to the regular BridgeDb mapping update schedule.

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2

Lathrop, Gregory M., Dora Cherif, Cécile Julier, and Michael James. "Gene mapping." Current Opinion in Biotechnology 1, no. 2 (December 1990): 172–79. http://dx.doi.org/10.1016/0958-1669(90)90027-i.

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3

Frézal, Jean. "Genes, gene map, gene mapping." Cytogenetic and Genome Research 46, no. 1-4 (1987): 1–10. http://dx.doi.org/10.1159/000132469.

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4

Harrap, Stephen B. "Repetitive gene mapping." Journal of Hypertension 13, no. 5 (May 1995): 567. http://dx.doi.org/10.1097/00004872-199505000-00013.

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5

Stern, Victoria. "Mapping the Spine, Gene by Gene." Scientific American Mind 19, no. 5 (October 2008): 8. http://dx.doi.org/10.1038/scientificamericanmind1008-8a.

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6

Daniels, D. L., and F. R. Blattner. "Mapping using gene encyclopaedias." Nature 325, no. 6107 (February 1987): 831–32. http://dx.doi.org/10.1038/325831a0.

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7

Harper, P. S. "Gene mapping and neurogenetics." Journal of Medical Genetics 24, no. 9 (September 1, 1987): 513–14. http://dx.doi.org/10.1136/jmg.24.9.513.

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8

Harper, P. S. "Human Gene Mapping 9." Journal of Medical Genetics 25, no. 11 (November 1, 1988): 788. http://dx.doi.org/10.1136/jmg.25.11.788.

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9

Yates, J. R. W. "Human Gene Mapping 10." Journal of Medical Genetics 27, no. 5 (May 1, 1990): 343. http://dx.doi.org/10.1136/jmg.27.5.343-a.

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10

SYKES, BRYAN. "Mapping Collagen Gene Mutations." Annals of the New York Academy of Sciences 580, no. 1 Structure, Mo (February 1990): 385–89. http://dx.doi.org/10.1111/j.1749-6632.1990.tb17946.x.

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11

Lam-Po-Tang, P. R. L. "Human Gene Mapping 9.5." Pathology 22, no. 2 (1990): 127. http://dx.doi.org/10.1016/s0031-3025(16)36287-0.

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12

Henry, G. "Human Gene Mapping 10." Biochemical Education 18, no. 3 (July 1990): 157. http://dx.doi.org/10.1016/0307-4412(90)90244-i.

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13

He, Weigong, and Shibo Li. "Congenital cataracts: gene mapping." Human Genetics 106, no. 1 (January 31, 2000): 1–13. http://dx.doi.org/10.1007/s004390051002.

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14

He, Weigong, and Shibo Li. "Congenital cataracts: gene mapping." Human Genetics 106, no. 1 (January 2000): 1–13. http://dx.doi.org/10.1007/s004399900169.

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15

Fallow, G. F., N. M. Highton, A. Landless, L. Mascia, and D. H. Pantling. "Human gene mapping report." Chromosome Research 3, no. 4 (June 1995): 265. http://dx.doi.org/10.1007/bf00713055.

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16

Ooms, L., J. Nicholl, P. Bird, and G. R. Sutherland. "Human gene mapping report." Chromosome Research 3, no. 7 (November 1995): 447. http://dx.doi.org/10.1007/bf00713898.

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17

Baker, E., A. D'Andrea, J. H. Phillips, G. R. Sutherland, and L. L. Lanier. "Human gene mapping report." Chromosome Research 3, no. 8 (December 1995): 511. http://dx.doi.org/10.1007/bf00713968.

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18

Cannizzaro, Linda A. "Gene mapping in cancer." Cancer Genetics and Cytogenetics 55, no. 2 (September 1991): 139–47. http://dx.doi.org/10.1016/0165-4608(91)90069-7.

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19

Harper, P. S. "Human Gene Mapping 11. The Eleventh International Workshop on Human Gene Mapping." Journal of Medical Genetics 30, no. 1 (January 1, 1993): 87. http://dx.doi.org/10.1136/jmg.30.1.87.

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20

Lander, Eric S., and Harvey Lodish. "Mitochondrial diseases: Gene mapping and gene therapy." Cell 61, no. 6 (June 1990): 925–26. http://dx.doi.org/10.1016/0092-8674(90)90055-j.

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21

Little, P. F. R. "Gene mapping and the human genome mapping project." Current Opinion in Cell Biology 2, no. 3 (June 1990): 478–84. http://dx.doi.org/10.1016/0955-0674(90)90131-w.

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22

Sharma, M., S. Kaur, M. Saluja, and P. Chhuneja. "Mapping and characterization of powdery mildew resistance gene in synthetic wheat." Czech Journal of Genetics and Plant Breeding 52, No. 3 (September 23, 2016): 120–23. http://dx.doi.org/10.17221/187/2015-cjgpb.

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23

Kraft, Peter, and Steve Horvath. "The genetics of gene expression and gene mapping." Trends in Biotechnology 21, no. 9 (September 2003): 377–78. http://dx.doi.org/10.1016/s0167-7799(03)00191-4.

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24

Simpson, Elizabeth, Phillip Chandler, Anne McLaren, Els Goulmy, Christine M. Disteche, David C. Page, and Malcolm A. Ferguson-Smith. "Mapping the H-Y gene." Development 101, Supplement (March 1, 1987): 157–61. http://dx.doi.org/10.1242/dev.101.supplement.157.

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This paper uses cytotoxic and proliferative T cell clones specific for H-Y and restricted by MHC molecules to type mice and humans inheriting incomplete portions of the Y chromosome. The data have allowed us to map the H-Y antigen gene Hya in mouse to a position closely linked with, but separable from, Tdy on the Sxr fragment and thus presumably to a position of the normal mouse Y chromosome near the centromere. The human H-Y gene maps between deletion intervals 4B and 7, separate from TDF which is on interval 1. We are currently testing cells from a number of additional patients who have inherited different portions of the Y chromosome to pinpoint the mapping more closely. It is of interest that in mouse a Y-linked gene controlling spermatogenesis (Spy) maps near Hya on the Sxr fragment: they could be the same or closely linked genes. In man, a gene controlling spermatogenesis maps to Yq and the data so far do not exclude that it could be coincident with the H-Y gene.

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25

Kurtz, T. W., and E. M. St Lezin. "Gene mapping in experimental hypertension." Journal of the American Society of Nephrology 3, no. 1 (July 1992): 28–34. http://dx.doi.org/10.1681/asn.v3128.

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In the rat, the results of genetic linkage studies by "candidate" gene or "positional mapping" approaches have suggested that DNA sequences that regulate blood pressure may be located in the vicinity of the kallikrein gene family on chromosome 1, the gene for angiotensin-converting enzyme on chromosome 10, the renin gene on chromosome 13, and the major histocompatibility complex on chromosome 20. Some studies have also suggested that blood pressure regulatory genes may be located on the sex chromosomes. Pending the results of confirmatory studies, these experiments should be interpreted with caution. However, with confirmation of these studies, it should be possible to create a variety of new animal models that will provide excellent opportunities for investigating the molecular, biochemical, and physiologic determinants of high blood pressure. In addition, in genetic studies in humans with essential hypertension, it may be worthwhile to target chromosome regions that are homologous to those implicated in linkage studies of hypertension in rodents. By narrowing the focus on selected areas of the genome, experimental linkage studies in the rat may also be used to guide the detailed molecular approaches ultimately required to identify the specific DNA sequence alterations that give rise to increased blood pressure.

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26

Qu, Xianggui. "The Statistics of Gene Mapping." Technometrics 50, no. 1 (February 2008): 94. http://dx.doi.org/10.1198/tech.2008.s537.

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27

Harper, P. S. "Gene mapping and medical genetics." Journal of Medical Genetics 22, no. 4 (August 1, 1985): 241–42. http://dx.doi.org/10.1136/jmg.22.4.241.

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28

Shaw, D. J., J. D. Brook, A. L. Meredith, H. G. Harley, M. Sarfarazi, and P. S. Harper. "Gene mapping and chromosome 19." Journal of Medical Genetics 23, no. 1 (February 1, 1986): 2–10. http://dx.doi.org/10.1136/jmg.23.1.2.

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29

Kong, A., and F. Wright. "Asymptotic theory for gene mapping." Proceedings of the National Academy of Sciences 91, no. 21 (October 11, 1994): 9705–9. http://dx.doi.org/10.1073/pnas.91.21.9705.

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30

WOMACK, JAMES E. "Main Session II: Gene mapping." Animal Genetics 20, no. 4 (April 24, 2009): 330–31. http://dx.doi.org/10.1111/j.1365-2052.1989.tb00880.x.

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31

Ott, Jurg, and Josephine Hoh. "Statistical Approaches to Gene Mapping." American Journal of Human Genetics 67, no. 2 (August 2000): 289–94. http://dx.doi.org/10.1086/303031.

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32

Alting-Mees, M. A., and J. M. Short. "pBluescript II: gene mapping vectors." Nucleic Acids Research 17, no. 22 (1989): 9494. http://dx.doi.org/10.1093/nar/17.22.9494.

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33

Morton, N. E., and A. Collins. "The future of gene mapping." Genetic Analysis: Biomolecular Engineering 14, no. 1 (March 1997): 25–27. http://dx.doi.org/10.1016/s1050-3862(96)00170-2.

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34

Simsek, M. "Restriction mapping and gene analysis." Biochemical Education 24, no. 2 (April 1996): 117–19. http://dx.doi.org/10.1016/0307-4412(95)00158-1.

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35

Smith, M. J., and P. N. Goodfellow. "Gene mapping and genetic diseases." Current Opinion in Cell Biology 1, no. 3 (June 1989): 460–65. http://dx.doi.org/10.1016/0955-0674(89)90006-9.

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36

Frischauf, Anna-Maria. "Gene-mapping techniques and applications." Trends in Genetics 8, no. 2 (February 1992): 78. http://dx.doi.org/10.1016/0168-9525(92)90358-b.

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37

Barker, Peter E. "Gene Mapping and Cystic Fibrosis." American Journal of the Medical Sciences 299, no. 1 (January 1990): 69–72. http://dx.doi.org/10.1097/00000441-199001000-00015.

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38

Dorozynski, A. "Gene Mapping the Industrial Way." Science 256, no. 5056 (April 24, 1992): 463. http://dx.doi.org/10.1126/science.256.5056.463.

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39

Lécuyer, Eric, and Pavel Tomancak. "Mapping the gene expression universe." Current Opinion in Genetics & Development 18, no. 6 (December 2008): 506–12. http://dx.doi.org/10.1016/j.gde.2008.08.003.

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40

Galland, Joel, and Mark H. Skolnick. "A gene mapping expert system." Computers and Biomedical Research 23, no. 4 (August 1990): 297–309. http://dx.doi.org/10.1016/0010-4809(90)90023-6.

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41

Musarella, Maria A. "Gene mapping of ocular diseases." Survey of Ophthalmology 36, no. 4 (January 1992): 285–312. http://dx.doi.org/10.1016/0039-6257(92)90096-c.

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42

Frattini, Annalisa, Sara Faranda, and Paolo Vezzoni. "Computer Gene Mapping byEagI-Based STSs." Genomics 38, no. 1 (November 1996): 87–91. http://dx.doi.org/10.1006/geno.1996.0597.

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43

Chen, R., E. A. Stahl, F. A. S. Kurreeman, P. K. Gregersen, K. A. Siminovitch, J. Worthington, L. Padyukov, S. Raychaudhuri, and R. M. Plenge. "Fine mapping the TAGAP risk locus in rheumatoid arthritis." Genes & Immunity 12, no. 4 (March 10, 2011): 314–18. http://dx.doi.org/10.1038/gene.2011.8.

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44

Kitajima, H., M. Sonoda, and K. Yamamoto. "HLA and SNP haplotype mapping in the Japanese population." Genes & Immunity 13, no. 7 (August 23, 2012): 543–48. http://dx.doi.org/10.1038/gene.2012.35.

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45

Le Bras, Alexandra. "Mapping gene expression in C.elegans neurons." Lab Animal 50, no. 9 (August 9, 2021): 241. http://dx.doi.org/10.1038/s41684-021-00835-7.

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46

Weghe, A. "1. Gene mapping and population genetics." Animal Genetics 20, no. 1 (April 24, 2009): 1–24. http://dx.doi.org/10.1111/j.1365-2052.1989.tb01908.x.

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47

Dobrovic, A., and Marshall Graves. "Gene mapping in marsupials and monotremes." Cytogenetic and Genome Research 41, no. 1 (1986): 9–13. http://dx.doi.org/10.1159/000132189.

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48

Dawson, G. W., and Marshall Graves. "Gene mapping in marsupials and monotremes." Cytogenetic and Genome Research 42, no. 1-2 (1986): 80–84. http://dx.doi.org/10.1159/000132256.

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49

Dawson, G. W., P. G. Johnston, and Marshall Graves. "Gene mapping in marsupials and monotremes." Cytogenetic and Genome Research 45, no. 1 (1987): 1–4. http://dx.doi.org/10.1159/000132415.

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50

Reeve, J. P., and B. Rannala. "DMLE+: Bayesian linkage disequilibrium gene mapping." Bioinformatics 18, no. 6 (June 1, 2002): 894–95. http://dx.doi.org/10.1093/bioinformatics/18.6.894.

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