Journal articles on the topic 'Gene dependency'
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Marcireau, Christophe, Fréderic Lacroix, Dietmar Hoffmann, May Cindhuchao, Loreley Calvet, Yvette Ruffin, and Laurent Debussche. "Abstract 1673: KRAS dependency, a gene editing approach." Cancer Research 84, no. 6_Supplement (March 22, 2024): 1673. http://dx.doi.org/10.1158/1538-7445.am2024-1673.
Tsai, Kun-Che, Shin-Yu Fang, Shu-Jyuan Yang, Ming-Jium Shieh, Win-Li Lin, and Wen-Shiang Chen. "Time dependency of ultrasound-facilitated gene transfection." Journal of Gene Medicine 11, no. 8 (August 2009): 729–36. http://dx.doi.org/10.1002/jgm.1347.
Croce, Carlo M. "miRNAs in the spotlight: Understanding cancer gene dependency." Nature Medicine 17, no. 8 (August 2011): 935–36. http://dx.doi.org/10.1038/nm0811-935.
Zhang, Qing, Xiaodan Fan, Yejun Wang, Mingan Sun, Samuel S. M. Sun, and Dianjing Guo. "A Model-Based Method for Gene Dependency Measurement." PLoS ONE 7, no. 7 (July 19, 2012): e40918. http://dx.doi.org/10.1371/journal.pone.0040918.
Gao, Xin, Daniel Q. Pu, and Peter X. K. Song. "Transition Dependency: A Gene-Gene Interaction Measure for Times Series Microarray Data." EURASIP Journal on Bioinformatics and Systems Biology 2009 (2009): 1–12. http://dx.doi.org/10.1155/2009/535869.
Li, Zhong, and Zhou. "Prediction of Bone Metastasis in Breast Cancer Based on Minimal Driver Gene Set in Gene Dependency Network." Genes 10, no. 6 (June 17, 2019): 466. http://dx.doi.org/10.3390/genes10060466.
Zhou, Xiangdong, Keith C. C. Chan, Zhihua Huang, and Jingbin Wang. "Determining dependency and redundancy for identifying gene–gene interaction associated with complex disease." Journal of Bioinformatics and Computational Biology 18, no. 05 (October 2020): 2050035. http://dx.doi.org/10.1142/s0219720020500353.
Ding, Yunfeng, Luis E. Contreras-Llano, Eliza Morris, Michelle Mao, and Cheemeng Tan. "Minimizing Context Dependency of Gene Networks Using Artificial Cells." ACS Applied Materials & Interfaces 10, no. 36 (August 16, 2018): 30137–46. http://dx.doi.org/10.1021/acsami.8b10029.
Pons, Guillem, Gabriel Gallo-Oller, Natalia Navarro, Patricia Zarzosa, Júlia Sansa-Girona, Lia García-Gilabert, Ainara Magdaleno, et al. "Analysis of Cancer Genomic Amplifications Identifies Druggable Collateral Dependencies within the Amplicon." Cancers 15, no. 6 (March 7, 2023): 1636. http://dx.doi.org/10.3390/cancers15061636.
Grzywacz, Anna, Wojciech Barczak, Jolanta Chmielowiec, Krzysztof Chmielowiec, Aleksandra Suchanecka, Grzegorz Trybek, Jolanta Masiak, Paweł Jagielski, Katarzyna Grocholewicz, and Blazej Rubiś. "Contribution of Dopamine Transporter Gene Methylation Status to Cannabis Dependency." Brain Sciences 10, no. 6 (June 23, 2020): 400. http://dx.doi.org/10.3390/brainsci10060400.
Wang, Ke, Lei Shi, Xiaona Liang, Pei Zhao, Wanxin Wang, Junxian Liu, Yanan Chang, et al. "The gene TaWOX5 overcomes genotype dependency in wheat genetic transformation." Nature Plants 8, no. 2 (January 13, 2022): 110–17. http://dx.doi.org/10.1038/s41477-021-01085-8.
Ikeda, Hiroki, Qing Yong, Takeshi Kurose, Takeshi Todo, Wataru Mizunoya, Tohru Fushiki, Yutaka Seino, and Yuichiro Yamada. "Clock gene defect disrupts light-dependency of autonomic nerve activity." Biochemical and Biophysical Research Communications 364, no. 3 (December 2007): 457–63. http://dx.doi.org/10.1016/j.bbrc.2007.10.058.
Pei, Xin-Hai, Feng Bai, Tateki Tsutsui, Hiroaki Kiyokawa, and Yue Xiong. "Genetic Evidence for Functional Dependency of p18Ink4c on Cdk4." Molecular and Cellular Biology 24, no. 15 (August 1, 2004): 6653–64. http://dx.doi.org/10.1128/mcb.24.15.6653-6664.2004.
Zhou, Yujia, Gregory P. Takacs, Jatinder K. Lamba, Christopher Vulpe, and Christopher R. Cogle. "Functional Dependency Analysis Identifies Potential Druggable Targets in Acute Myeloid Leukemia." Cancers 12, no. 12 (December 10, 2020): 3710. http://dx.doi.org/10.3390/cancers12123710.
Chen, Xiao, Yinglu Li, and Chao Lu. "Abstract A015: Cancer co-dependency mapping identifies a functional interplay between PRC2 and MLL-MEN1 complex in lymphoma." Cancer Research 82, no. 23_Supplement_2 (December 1, 2022): A015. http://dx.doi.org/10.1158/1538-7445.cancepi22-a015.
Das, Sunanda, and Asit Kumar Das. "Probability Based Most Informative Gene Selection From Microarray Data." International Journal of Rough Sets and Data Analysis 5, no. 1 (January 2018): 1–12. http://dx.doi.org/10.4018/ijrsda.2018010101.
Ellegast, Jana M., Gabriela Alexe, Subha Baniya, Amanda Hamze, Audrey Taillon, Biniam Adane, Amy Saur Conway, et al. "Functional Dissection of Cellular Programs to Uncover Novel Gene Dependencies in AML." Blood 142, Supplement 1 (November 28, 2023): 1393. http://dx.doi.org/10.1182/blood-2023-189304.
Weiskittel, Taylor M., Andrew Cao, Kevin Meng-Lin, Zachary Lehmann, Benjamin Feng, Cristina Correia, Cheng Zhang, et al. "Network Biology-Inspired Machine Learning Features Predict Cancer Gene Targets and Reveal Target Coordinating Mechanisms." Pharmaceuticals 16, no. 5 (May 16, 2023): 752. http://dx.doi.org/10.3390/ph16050752.
Liu, Jianxiao, Zonglin Tian, Yingjie Xiao, Haijun Liu, Songlin Hao, Xiaolong Zhang, Chaoyang Wang, Jianchao Sun, Huan Yu, and Jianbing Yan. "Gene Regulatory Relationship Mining Using Improved Three-Phase Dependency Analysis Approach." IEEE/ACM Transactions on Computational Biology and Bioinformatics 17, no. 1 (January 1, 2020): 339–46. http://dx.doi.org/10.1109/tcbb.2018.2872993.
CHANG, JEONG-HO, KYU-BAEK HWANG, S. JUNE OH, and BYOUNG-TAK ZHANG. "BAYESIAN NETWORK LEARNING WITH FEATURE ABSTRACTION FOR GENE-DRUG DEPENDENCY ANALYSIS." Journal of Bioinformatics and Computational Biology 03, no. 01 (February 2005): 61–77. http://dx.doi.org/10.1142/s0219720005000874.
Prabha, Swayam, Wen-Zhong Zhou, Jayanth Panyam, and Vinod Labhasetwar. "Size-dependency of nanoparticle-mediated gene transfection: studies with fractionated nanoparticles." International Journal of Pharmaceutics 244, no. 1-2 (September 2002): 105–15. http://dx.doi.org/10.1016/s0378-5173(02)00315-0.
Pavličev, Mihaela, and James M. Cheverud. "Constraints Evolve: Context Dependency of Gene Effects Allows Evolution of Pleiotropy." Annual Review of Ecology, Evolution, and Systematics 46, no. 1 (December 4, 2015): 413–34. http://dx.doi.org/10.1146/annurev-ecolsys-120213-091721.
Wang, Wenyu, Alina Malyutina, Alberto Pessia, Jani Saarela, Caroline A. Heckman, and Jing Tang. "Combined gene essentiality scoring improves the prediction of cancer dependency maps." EBioMedicine 50 (December 2019): 67–80. http://dx.doi.org/10.1016/j.ebiom.2019.10.051.
TOHSATO, YUKAKO, TOMOYA BABA, YUSAKU MAZAKI, MASAHIRO ITO, BARRY L. WANNER, and HIROTADA MORI. "ENVIRONMENTAL DEPENDENCY OF GENE KNOCKOUTS ON PHENOTYPE MICROARRAY ANALYSIS IN ESCHERICHIA COLI." Journal of Bioinformatics and Computational Biology 08, supp01 (December 2010): 83–99. http://dx.doi.org/10.1142/s021972001000521x.
Chen, Mei-Ju May, Jun Li, Gordon B. Mills, and Han Liang. "Predicting Cancer Cell Line Dependencies From the Protein Expression Data of Reverse-Phase Protein Arrays." JCO Clinical Cancer Informatics, no. 4 (September 2020): 357–66. http://dx.doi.org/10.1200/cci.19.00144.
Kaiser, Sandra, Luise Henrich, Iva Kiessling, Benedikt Loy, and Nils Schallner. "Neuroprotection via Carbon Monoxide Depends on the Circadian Regulation of CD36-Mediated Microglial Erythrophagocytosis in Hemorrhagic Stroke." International Journal of Molecular Sciences 25, no. 3 (January 30, 2024): 1680. http://dx.doi.org/10.3390/ijms25031680.
Ellegast, Jana M., Philipp J. Rauch, Larisa V. Kovtonyuk, Rouven Müller, Ulrich Wagner, Yasuyuki Saito, Nicole Wildner-Verhey van Wijk, et al. "inv(16) and NPM1mut AMLs engraft human cytokine knock-in mice." Blood 128, no. 17 (October 27, 2016): 2130–34. http://dx.doi.org/10.1182/blood-2015-12-689356.
Yeo, Shen Yong, Wai Yee Wong, Jesslyn, Tan Boon Toh, Valerie Shiwen Yang, and Xing Yi Woo. "Abstract P58: Utilizing Cancer Vulnerabilities and Dependencies to Explore Cancer Biomarkers by Triangulating Large-Scale Gene Knockout and Drug Response Data." Cancer Research 84, no. 8_Supplement (April 15, 2024): P58. http://dx.doi.org/10.1158/1538-7445.fcs2023-p58.
Corbel, Stephane, Karl Hodel, Kathleen Tran, Maci Meyers, Jing Tong, Michele Baltay, Peter Kilfeather, et al. "Abstract 1062: A comprehensive CRISPR-enabled functional genomics profiling platform in acute myeloid leukemia (AML): Pilot study and validation of Fx Heme." Cancer Research 83, no. 7_Supplement (April 4, 2023): 1062. http://dx.doi.org/10.1158/1538-7445.am2023-1062.
Kanai, Ryan, Emily Norton, Patrick Stern, Richard O. Hynes, and John M. Lamar. "Identification of a Gene Signature That Predicts Dependence upon YAP/TAZ-TEAD." Cancers 16, no. 5 (February 20, 2024): 852. http://dx.doi.org/10.3390/cancers16050852.
Bernthaler, Andreas, Irmgard Mühlberger, Raul Fechete, Paul Perco, Arno Lukas, and Bernd Mayer. "A dependency graph approach for the analysis of differential gene expression profiles." Molecular BioSystems 5, no. 12 (2009): 1720. http://dx.doi.org/10.1039/b903109j.
Ma, P. C. H., and K. C. C. Chan. "Inferring Gene Regulatory Networks From Expression Data by Discovering Fuzzy Dependency Relationships." IEEE Transactions on Fuzzy Systems 16, no. 2 (April 2008): 455–65. http://dx.doi.org/10.1109/tfuzz.2007.894969.
Rapoport, Rachel, Avraham Greenberg, Zohar Yakhini, and Itamar Simon. "A Cyclic Permutation Approach to Removing Spatial Dependency between Clustered Gene Ontology Terms." Biology 13, no. 3 (March 8, 2024): 175. http://dx.doi.org/10.3390/biology13030175.
Obst, Reinhard, Hannah Rabenstein, Anne Behrendt, Joachim Ellwart, Marion Horsch, and Johannes Beckers. "Differential antigen-dependency of CD4+ and CD8+ T cells (P1338)." Journal of Immunology 190, no. 1_Supplement (May 1, 2013): 208.12. http://dx.doi.org/10.4049/jimmunol.190.supp.208.12.
Kettyle, Laura M., Charles-Étienne Lebert-Ghali, Ivan V. Grishagin, Glenda J. Dickson, Paul G. O’Reilly, David A. Simpson, Janet J. Bijl, Ken I. Mills, Guy Sauvageau, and Alexander Thompson. "Pathways, Processes, and Candidate Drugs Associated with a Hoxa Cluster-Dependency Model of Leukemia." Cancers 11, no. 12 (December 17, 2019): 2036. http://dx.doi.org/10.3390/cancers11122036.
Sahin, Ilyas, Yawara Kawano, Romanos Sklavenitis-Pistofidis, Michele Moschetta, Yuji Mishima, Salomon Manier, Antonio Sacco, et al. "Citron Rho-interacting kinase silencing causes cytokinesis failure and reduces tumor growth in multiple myeloma." Blood Advances 3, no. 7 (April 2, 2019): 995–1002. http://dx.doi.org/10.1182/bloodadvances.2018028456.
Maria, Elisa C. J., Isabel Salazar, Luis Sanz, and Miguel A. Gómez-Villegas. "Using Copula to Model Dependence When Testing Multiple Hypotheses in DNA Microarray Experiments: A Bayesian Approximation." Mathematics 8, no. 9 (September 4, 2020): 1514. http://dx.doi.org/10.3390/math8091514.
Khaliq and Fallahi-Sichani. "Epigenetic Mechanisms of Escape from BRAF Oncogene Dependency." Cancers 11, no. 10 (October 1, 2019): 1480. http://dx.doi.org/10.3390/cancers11101480.
Awofala, Awoyemi A., Susan Jones, and Jane A. Davies. "The Heat Shock Protein 26 Gene is Required for Ethanol Tolerance in Drosophila." Journal of Experimental Neuroscience 5 (January 2011): JEN.S6280. http://dx.doi.org/10.4137/jen.s6280.
Hawkins, Hayley J., Betelehem W. Yacob, Monica E. Brown, Brandon R. Goldstein, John J. Arcaroli, Stacey M. Bagby, Sarah J. Hartman, et al. "Examination of Wnt signaling as a therapeutic target for pancreatic ductal adenocarcinoma (PDAC) using a pancreatic tumor organoid library (PTOL)." PLOS ONE 19, no. 4 (April 10, 2024): e0298808. http://dx.doi.org/10.1371/journal.pone.0298808.
Wang, Jie-Huei, and Yi-Hau Chen. "Network-adjusted Kendall’s Tau Measure for Feature Screening with Application to High-dimensional Survival Genomic Data." Bioinformatics 37, no. 15 (January 29, 2021): 2150–56. http://dx.doi.org/10.1093/bioinformatics/btab064.
Lall, Snehalika, Sumanta Ray, and Sanghamitra Bandyopadhyay. "RgCop-A regularized copula based method for gene selection in single-cell RNA-seq data." PLOS Computational Biology 17, no. 10 (October 19, 2021): e1009464. http://dx.doi.org/10.1371/journal.pcbi.1009464.
Ma, Xiaomin, Xuelian Li, and Uwe Ludewig. "Arbuscular mycorrhizal colonization outcompetes root hairs in maize under low phosphorus availability." Annals of Botany 127, no. 1 (September 2, 2020): 155–66. http://dx.doi.org/10.1093/aob/mcaa159.
Foroughmand-Araabi, Mohammad-Hadi, Bahram Goliaei, Kasra Alishahi, Mehdi Sadeghi, and Sama Goliaei. "Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach." Journal of Bioinformatics and Computational Biology 13, no. 02 (April 2015): 1550002. http://dx.doi.org/10.1142/s021972001550002x.
Chan, A. M., T. P. Fleming, E. S. McGovern, M. Chedid, T. Miki, and S. A. Aaronson. "Expression cDNA cloning of a transforming gene encoding the wild-type G alpha 12 gene product." Molecular and Cellular Biology 13, no. 2 (February 1993): 762–68. http://dx.doi.org/10.1128/mcb.13.2.762-768.1993.
Chan, A. M., T. P. Fleming, E. S. McGovern, M. Chedid, T. Miki, and S. A. Aaronson. "Expression cDNA cloning of a transforming gene encoding the wild-type G alpha 12 gene product." Molecular and Cellular Biology 13, no. 2 (February 1993): 762–68. http://dx.doi.org/10.1128/mcb.13.2.762.
Banerjee, Samiran, and Steven D. Siciliano. "Factors Driving Potential Ammonia Oxidation in Canadian Arctic Ecosystems: Does Spatial Scale Matter?" Applied and Environmental Microbiology 78, no. 2 (November 11, 2011): 346–53. http://dx.doi.org/10.1128/aem.06132-11.
Richter, Camden, David Mayhew, Jonathan P. Rennhack, Jonathan So, Elizabeth H. Stover, Justin H. Hwang, and Danuta Szczesna-Cordary. "Genomic Amplification and Functional Dependency of the Gamma Actin Gene ACTG1 in Uterine Cancer." International Journal of Molecular Sciences 21, no. 22 (November 18, 2020): 8690. http://dx.doi.org/10.3390/ijms21228690.
Kuznetsova, T., J. A. Staessen, T. Reineke, A. Olszanecka, A. Ryabikov, V. Tikhonoff, E. Casiglia, R. Fagard, K. Kawecka-Jaszcz, and E. Brand. "CONTEXT-DEPENDENCY OF THE RELATION BETWEEN LEFT VENTRICULAR MASS AND AGT GENE VARIANTS." Journal of Hypertension 22, Suppl. 2 (June 2004): S346—S347. http://dx.doi.org/10.1097/00004872-200406002-01210.
Jin, Liyuan, Said Nawab, Mengli Xia, Xiaoyan Ma, and Yi‐Xin Huo. "Context‐dependency of synthetic minimal promoters in driving gene expression: a case study." Microbial Biotechnology 12, no. 6 (October 2, 2019): 1476–86. http://dx.doi.org/10.1111/1751-7915.13489.