Academic literature on the topic 'Freshwater amphibious reptiles'

Abstract This is the first review of life cycles of trematodes with parthenitae and larvae in freshwater gastropods from forest biocoenoses of Ukrainian Polissia. Altogether 26 trematode species from 14 families were found circulating in 13 ways in molluscs from reservoirs connected with forest ecosystems of the region. Three-host life cycle is typical of 18 trematode species, two-host life cycle has found in 7 species, and four-host cycles has found in one species. Alaria alata Goeze, 1782, has three-host (Shults, 1972) and four-host cycles. Opisthioglyphe ranae (Froehlich, 1791) can change three-host life cycle to two-host cycle replacing the second intermediate host (Niewiadomska et al., 2006) with the definitive host. Species with primary two-host life cycle belong to Notocotylidae Lühe, 1909, Paramphistomidae Fischoeder, 1901 and Fasciolidae Railliet, 1758 families. Trematodes with three-host cycle have variable second intermediate hosts, including invertebrates and aquatic or amphibious vertebrates. Definitive hosts of trematodes are always vertebrates from different taxonomic groups. The greatest diversity of life cycles is typical for trematodes of birds. Trematodes in the forest biocoenoses of Ukrainian Polissia infect birds in six ways, mammals in three, amphibians in four, and reptiles in one way. The following species have epizootic significance: Liorchis scotiae (Willmott, 1950); Parafasciolopsis fasciolaemorpha Ejsmont, 1932; Notocotylus seineti Fuhrmann, 1919; Catatropis verrucosa (Frölich, 1789) Odhner, 1905; Cotylurus cornutus (Rudolphi, 1808); Echinostoma revolutum (Fröhlich, 1802) Dietz, 1909; Echinoparyphium aconiatum Dietz, 1909; Echinoparyphium recurvatum (Linstow, 1873); Hypoderaeum conoideum (Bloch, 1782) Dietz, 1909; Paracoenogonimus ovatus Kasturada, 1914; Alaria alata Goeze, 1782.

ABSTRACT A research project was commissioned by the American Petroleum Institute (API) to summarize information on freshwater spill environmental effects. While threats to migrating fish stocks or aquatic mammals may be primary concerns following an ocean spill, adverse effects to benthic invertebrates, reptiles, amphibians, waterfowl, fish hatcheries, shoreline vegetation, or public drinking water intakes may be the focus of a freshwater event. Environmental effects from spilled petroleum constituents and whole oils are discussed. Research needs are identified.

In the present work, we discuss the results of a four-day long rapid survey around Dhamapur Lake and surrounding freshwater habitats in the Sindhudurg District of Maharashtra through public participation. In total, 61 odonates, 51 butterflies, 17 species of amphibians and reptiles, 90 birds, and four mammals are documented. Our observations taken over a brief time reflect the importance of citizen science in documenting local biodiversity. We report involvement of citizen scientists in recovering significant odonate records for the state.

AbstractThe giant kidney worm Dioctophymerenale is normally found in wild carnivores and domestic dogs, with aquatic oligochaetes acting as intermediate hosts. In the present study a prevalence of 50% of third-stage larvae of D. renale was recorded in 60 specimens of the freshwater turtle Trachemys dorbigni from southern Brazil. Larvae were encysted in muscles, the coelomic cavity and mesentery, the serous lining of the stomach and on the surfaces of the lung, heart, liver, pancreas, spleen and intestines. There are no previous records of reptiles being part of the life cycle of D. renale, although fish and amphibians normally act as paratenic hosts. This is the first report of third-stage D. renale larvae in the freshwater turtle, T. dorbigni.

AbstractAdults of Clinostomum spp. are digenetic trematodes found in fish-eating birds, reptiles and occasionally mammals, including humans. Freshwater snails serve as first intermediate hosts and many fish species and amphibians as second intermediate hosts. To date, amphibian hosts of Clinostomum metacercariae include members of urodele and anuran families in North America, but no data are available on infections of European amphibians, including newts. In this study, we characterize infections of Clinostomum complanatum metacercariae in four smooth (Lissotriton vulgaris) and 18 Italian crested newts (Triturus carnifex) from an artificial pond located in a protected area in Tuscany, Italy. Parasites were surgically removed from the infected newts and identified both morphologically and using sequences of a mitochondrial gene, cytochrome c oxidase I, and the ribosomal markers, internal transcribed spacers. This is the first record of C. complanatum in European newts and, more generally, in amphibians in Europe.

Abstract In the last decade, eDNA and metabarcoding have opened new avenues to biodiversity studies; amphibians and reptiles are animals for which these new approaches have allowed great leaps forward. Here we review different approaches through which eDNA can be used to study amphibians, reptiles and many more organisms. eDNA is often used to evaluate the presence of target species in freshwaters; it has been particularly useful to detect invasive alien amphibians and secretive or rare species, but the metabarcoding approach is increasingly used as a cost-effective approach to assess entire communities. There is growing evidence that eDNA can be also useful to study terrestrial organisms, to evaluate the relative abundance of species, and to detect reptiles. Metabarcoding has also revolutionized studies on the microbiome associated to skin and gut, clarifying the complex relationships between pathogens, microbial diversity and environmental variation. We also identify additional aspects that have received limited attention so far, but can greatly benefit from innovative applications of eDNA, such as the study of past biodiversity, diet analysis and the reconstruction of trophic interactions. Despite impressive potential, eDNA and metabarcoding also bear substantial technical and analytical complexity; we identify laboratory and analytical strategies that can improve the robustness of results. Collaboration among field biologists, ecologist, molecular biologists, and bioinformaticians is allowing fast technical and conceptual advances; multidisciplinary studies involving eDNA analyses will greatly improve our understanding of the complex relationships between organisms, and our effectiveness in assessing and preventing the impact of human activities.

The abundance–occupancy relationship is one of the most well-examined relationships in ecology. At the species level, a positive association has been widely documented. However, until recently, research on the nature of this relationship at broad taxonomic and spatial scales has been limited. Here, we perform a comparative analysis of 12 taxonomic groups across a large spatial scale (Canada), using data on Canadian species at risk: amphibians, arthropods, birds, freshwater fishes, lichens, marine fishes, marine mammals, molluscs, mosses, reptiles, terrestrial mammals, and vascular plants. We find a significantly positive relationship in all taxonomic groups with the exception of freshwater fishes (negative association) and lichens (no association). In general, our work underscores the strength and breadth of this apparently fundamental relationship and provides insight into novel applications for large-scale population dynamics. Further development of species-independent abundance–occupancy relationships, or those of a similar nature, might well prove instrumental in serving as starting points for developing species-independent reference points and recovery strategies.

Background: Hemogregarines are the most common intraerythrocytic parasites found in reptiles. The genus Haemogregarina has aquatic vertebrates as intermediate hosts, and as definitive hosts the leeches. The genus Hepatozoon can be found parasitizing amphibians, reptiles, birds and mammals and its main vectors invertebrates are mosquitoes, tsetse flies, lice, fleas and mites. The diagnosis of these parasites is done by the technique of blood smear, but modern diagnoses include evaluation of blood by polymerase chain reaction (PCR). The aim this study was to determine the occurrence of infection by hemogregarine in freshwater turtles, through PCR.Materials, Methods & Results: Samples from 99 freshwater turtles of species P. expansa and P. geoffroanus of Fundação Zoológico de Brasília,Distrito Federal, Brazil, were used. The animals was captured using a hand net, and were immediately individually identified. The blood samples was collected by puncture of the occipital sinus, and placed into tubes containing sodium heparin anticoagulant for hematologic and molecular analysis. Two different sets of oligonucleotides were used, one to detect hemogregarines and other to detect Hepatozoon sp. infection. The presence of hemogregarine was detected in 20 samples analyzed (n = 99), these eleven samples were positive for hemogregarine, 5 were Hepatozoon sp. and 4 were positive for both oligonucleotides. Laboratory abnormalities were observed in the concentration of total plasma proteins, total serum proteins and globulin, and in the number of thrombocytesin animals positive for hemogregarines and only alterations in the number of thrombocytes were observed in Hepatozoon sp. positive animals of both species.Discussion: This study showed that there is a high occurrence of infection by hemogregarines in the freshwater turtles samples examinated. The remarkable difficulty of identifying morphological differences, combined with the development of universal oligonucleotides, make further assessments infections hematozoa to be performed using molecular tools and specially sequencing of the 18S rRNA gene for hemogregarines. Protein levels in animals depends on the management, diets and normal physiological variations of each species. Hypoproteinemia is commonly observed in reptiles with chronic malnutrition and gastrointestinal parasitism. Therefore it is suggested that the cause of this low level in the measurement of proteins could be directly linked to the presence of hemoparasites because with the infection more animals feeding unless the negative, causing malnutrition, or even the concomitant presence of gastrointestinal parasites, because the study did not evaluate this level of parasitism. Thrombocytes in reptiles participate in blood clotting and some studies have shown that they also have phagocytic capacity. Thrombocytopenia in reptiles is usually a result of excessive use or deficient production. Thus, thrombocytopenia observed in hemogregarines positive animals of this study may suggest that the presence of this group of parasites can cause thrombocytopenia that may be associated with a deficient production of thrombocytes or even greater consumption of these blood cells. The increase of thrombocytes observed in animals positive for Hepatozoon sp. may be related to the defense of the animal, since thrombocytes also have phagocytic activity. No changes were observed in laboratorial tests of P. expansa, which may be due to the small number of this animal species analyzed.

BackgroundOntario, Canada is home to eight native species of turtles; all eight are federally listed as Species At Risk, due to anthropogenic threats. However, until recently, reports of infectious disease have been lacking. Ranavirus is seen as an emerging threat for ectotherms globally, with mass die-offs most often reported in amphibians. Ranavirus has been detected in Ontario’s amphibian populations, can be transmitted via water, and can be transmitted from amphibians to turtles. However, no studies on the prevalence of this virus in Ontario’s turtles have previously been carried out. With recent reports of two confirmed positive case of ranavirus in turtles in Ontario, a knowledge of the ecology of ranavirus in Ontario’s turtles has become even more important. This study estimates the prevalence of ranavirus in Ontario’s turtles, and investigates the hypothesis that this is a newly emergent disease.MethodsSixty-three samples were tested for ranavirus via PCR. These included a variety of turtle species, across their home range in Southern Ontario. Fifty-two of the samples originated from the liver and kidney of turtles who had succumbed to traumatic injuries after being admitted to the Ontario Turtle Conservation Centre; ten of the samples were taken from cloacal swabs, lesion swabs, or tail clips collected from live turtles showing signs of clinical disease. One of the live turtles was later euthanized for humane reasons and PCR was also carried out on the liver/kidney.ResultsNone of the 63 samples were found to be positive for ranavirus via PCR. The zero prevalence found in this study translates into a population prevalence estimate of less than 5%, with no change in prevalence from 2014–2018.DiscussionThis is the first report on the prevalence of ranavirus in Ontario’s turtles, and will help build an understanding of the ecology of this virus in Ontario. Ranavirus has historically been underreported in reptiles, but there has been an increase in global reports recently, most likely due to increased awareness. A carrier state is thought to exist in reptiles which makes surveillance in the population via random sampling a viable method of detection of prevalence. The first report of ranavirus in Ontario turtles occurred in 2018. This study suggests a continued low population prevalence for the years 2014–2018, however. Ongoing surveillance is necessary, as well as investigation of the eDNA presence in waterways as compared to the PCR of resident turtles, to further understand the sensitivity of these species to ranavirus infection. The utilization of qPCR would be helpful, to better quantify any positives encountered.

Here we present a multi-taxa inventory of naturalized alien species recorded on continental Chile and adjacent marine habitats, including eight taxonomic groups. We identified 1,122 species. These comprise 790 vascular plants (terrestrial and aquatic); 31 nonvascular plants [Bryophyta (mosses), Marchantiophyta (liverworts) and Anthocerotophyta (hornworts)]; 18 marine and freshwater macro and micro algae; 71 fungi; 39 terrestrial vertebrates (amphibians, reptiles, mammals and birds); 108 insects; 37 marine and freshwater invertebrates and vertebrates (6 polychaetes, 3 mollusks and 28 Pisces); and 28 terrestrial gastropods. For all taxonomic groups, naturalized species were found to mainly be distributed in regions with Mediterranean and temperate climates, with few at either extreme of the country. The invasion curves show that naturalized species first underwent a positive increment, followed by an apparent plateau phase, mainly in vascular plants, insects and vertebrates. In fungi, marine and freshwater macro and microalgae, vertebrates and invertebrates, the cumulative number of naturalized species increased sharply starting in the early 20th century; the lack of collections before 1900 is also evident. When considering naturalized species as a whole, this inventory highlights that the rate of new naturalizations consistently increased after 1950, especially for some taxonomic groups such as insects, fungi, and vascular plants. This multi-taxa inventory of naturalized species provides a platform for national reporting on biodiversity indicators and highlights areas where Chile must invest resources to manage biological invasions.

An ecological study of Emydura macquarii macquarii in the south-east region of Australia was conducted between October 1995 and March 1998. E. m. macquarii is an abundant and widespread species of short-necked turtle that is highly variable in morphology and related life history attributes. No study in Australia had previously looked at geographic variation in biological traits in freshwater turtles, hence the level of variation in E. m. macquarii had been poorly documented. The principal aims of this study were to investigate the plasticity of life history traits across populations of E. m. macquarii and to speculate on possible causes. A more intensive study was also conducted on a rare and suspected declining population of E. m. macquarii in the Nepean River to determine whether relevant management and conservation measures; were required. The study involved comparing various life history attributes between five populations of E. m. macquarii (Brisbane River, Macleay River, Hunter River, Nepean River and Murray River). The populations were specifically chosen to account for the range of variation in body size within this subspecies. Body size (maximum size, size at maturity, growth rates), population structures (sex ratios, age and size structures), reproductive traits (clutch mass, clutch size, egg size, egg content, etc.) and other attributes were collected for each population. Patterns of life history traits, both within and among populations, were explored so that causes of variation could be sought. Geographic variation in Body Size and other Related Life History Traits Body size in E. m. macquarii differed markedly between populations. Females ranged in maximum sizes (carapace length) of 180 mm in the Macleay River to over 300 mm in the Murray River. E. m. macquarii was sexually dimorphic across all populations with females larger than males in all cases. Maximum body size was positively related to the size at which a turtle matures. The size at maturity in turn was positively related to juvenile growth rates. Age was a more important factor for males in terms of timing of maturity whereas in females it was body size. Morphological variation was not only great between populations, but also within populations. Maximum body size was unrelated to latitude; hence it was inferred that habitat productivity had the most important influence on geographic variation in body size. Population structures also differed between populations. Sex ratios did not differ in the Brisbane, Macleay and Murray Rivers. However, a male bias was present in the Nepean River population and a female bias in the Hunter River. Juveniles were scarce in the Brisbane and Macleay Rivers but numerous in the Nepean and Hunter Rivers. Geographic Variation in Reproduction There was large variation in reproductive traits across populations of E. m. macquarii. Nesting season began as early as mid-September in the Brisbane River and as late as December in the Hunter River, and continued until early January. Populations in the Hunter and Murray Rivers are likely to produce only one clutch per season while populations from the Macleay and Nepean Rivers can produce two, and on some occasions, three clutches annually. The majority of females would appear to reproduce every year. Clutch mass, clutch size, and egg size varied greatly both within and among populations. A large proportion of variation in reproductive traits was due to the effects of body size. E. m. macquarii from large-bodied populations such as in the Brisbane and Murray Rivers produced bigger eggs than small-bodied populations. Within a population, clutch mass, clutch size, and egg size were all correlated with body size, except the Nepean River. The variability of egg size was smaller in large-bodied populations where egg size was more constant. Not all variation in reproductive traits was due to body size. Some of this variation was due to annual differences within a population. Reproductive traits within a population are relatively plastic, most likely a result of changing environmental conditions. Another source is the trade-off between egg size and clutch size. A negative relationship was found between egg size and clutch size (except the Brisbane River). Reproductive variation was also influenced by latitudinal effects. Turtles at lower latitudes produces more clutches, relatively smaller clutch sizes, clutch mass and larger eggs than populations at higher latitudes. Annual reproductive output is greater in tropical populations because they can produce more clutches per year in an extended breeding season. Eggs that were incubated at warmer temperatures hatched faster and produced smaller hatchlings. Incubation temperatures above 30�C increased egg mortality and hatchling deformities, suggesting this is above the optimum developmental temperature for E. m. macquarii. Hatchling size was positively related to egg size, hence hatchling sizes was on average larger in the Murray and Brisbane rivers. However, population differences remained in hatchling size after adjustments were made for egg size. For example, hatchlings from the Hunter River were smaller than those from the Macleay River despite the egg size being the same. These differences were most likely due to the shorter incubation periods of hatchlings from the Hunter River. Nepean River The Nepean River population of E. m. macquarii is at the southern coastal limit of its range. This is a locally rare population, which is believed to be declining. This study aimed at determining the distribution, abundance, and population dynamics to assess whether any conservation management actions were required. E. m. macquarii in the Nepean River was mainly concentrated between Penrith and Nortons Basin, although even here it was found at a very low density (10.6 - 12.1 per hectare). The largest male caught was 227 mm while the largest female was 260.4 mm. Males generally mature between 140 - 150 mm in carapace length and at four or five years of age. Females mature at 185 -195 mm and at six to seven years of age. Compared with other populations of E. macquarii, Nepean River turtles grow rapidly, mature quickly, are dominated by juveniles, have a male bias and have a high reproductive output. Far from being a population on the decline, the life history traits suggest a population that is young and expanding. There are considered to be two possible scenarios as to why the Nepean River population is at such a low density when it appears to be thriving. The first scenario is that the distribution of the population on the edge of its range may mean that a small and fluctuating population size may be a natural feature due to sub-optimal environmental conditions. A second scenario is that the population in the Nepean River has only recently become established from dumped pet turtles.

Australia’s introduced vertebrate pest species cost at least $1 billion annually in economic, environmental and social impacts. The Guide to Introduced Pest Animals of Australia is a comprehensive, practical guide to 60 introduced pest animal species present in Australia, including 27 mammals, 18 birds, nine freshwater fish, two amphibians and four reptiles. It contains descriptive information to identify each species in the field, including distinctive physical characteristics, size, weight, colouration, diet, breeding behaviour, habitat preferences, and information about footprints, dung, scats and audible animal calls. Each species profile is accompanied by practical management information, maps and high-quality photographs – allowing readers to learn about pest species in their local area, what problems they might cause, and what control options exist for management. This guide also contains a number of emerging high-risk pest species that may pose a significant threat to our natural environment, economy, agriculture and human health. Whether you are a farmer, natural resource manager, public land manager, pest controller, teacher, student, field naturalist or wildlife ecologist, this easy-to-use guide will help you identify Australia’s most significant introduced pest animals in your local area.

Capillaria species are members of the superfamily Trichinelloidae. These worms have a filamentous thin anterior end and a slightly thicker oesophagus which is surrounded by glandular cells or stichocytes. This oesophageal pattern is called stichosomal oesophagus. Capillaria species are parasites which are found in many vertebrate animals. More than two hundred species have been reported in several vertebrate species, including fish, amphibians, reptiles, birds, and mammals (Cross 1992; Chitwood et al. 1968), but only three species infect humans. These are Capillaria hepatica , C. aerophila and C. philippinensis (McCarthy and Moore 2000). Of these intestinal capillariosis, a fish-borne parasitic zoonosis caused by C. philippinensis , is the most important. Humans acquire the parasite, C. philippinensis, by eating uncooked or raw freshwater fish (Cross and Basaca-Sevilla 1991). The disease is endemic mainly in Philippines and Thailand where there are many reported fatalities.Although C . hepatica is found in rodents worldwide, only a few cases of hepatic capillariosis have been reported in humans from Europe, Asia, Africa, North and South America. The infection is acquired by the ingestion of embryonated eggs from the soil. Female worms deposit eggs in the liver tissue and granulomas develop around the egg. The eggs are released after the rodent is eaten and the liver digested. Eggs pass in the faeces and are deposited in the soil where they embryonate. Avoidance of contaminated soil would prevent human infection and destruction of rodents would control animal infections.Only 12 cases of human infection caused by Capillaria aerophila have been reported, the majority from Russia. The parasite is found within tissue of the respiratory passages of canines and felines worldwide.Anatrichosoma cutaneum (Nematoda, Trichosomoididae), also included in this chapter, is primarily a subcutaneous parasite of monkeys, but there are two reports of cutaneous infections in humans resulting in serpiginous lesions in the skin of the soles, palms, and nasal passages. In addition there is a further suspected case isolated from a breast nodule and a possible case of mucosal lesions in the mouth reported. Whole monkey colonies can be infected with this parasite and control is difficult.

There are only about twenty-five species of living crocodilians, found in semi-aquatic habitats, mostly around freshwater rivers, lakes, and swamps, but also in marine areas. ‘Crocodiles’ explains how the crocodile body is very well adapted for the amphibious way of life; they can move quickly between the land, where they spend much of the day basking, and the water in which they mostly feed and to where they flee if threatened. It considers their skin; how they breathe, move, and feed; and their sense organs, including the unique integumentary sense organs. The social behaviour of crocodiles, especially courtship and the care of the young, is much more elaborate than in any other reptile group.

<em>Abstract</em>.—Reported predators of lamprey include a variety of fishes, amphibians, reptiles, birds, and mammals, and predation on lamprey is known in both marine and freshwater habitats. Although lampreys are not typically prominent in the reported diets of predators, it does not follow that predation is not an important source of lamprey mortality. Concentrations of migrating and spawning lampreys may be especially vulnerable. Assemblages of predators on lampreys have changed through human activities such as stocking and harvest of fishes. In southeastern Minnesota, for example, most of the 1,145 km in 139 streams that currently are managed for trout now support brown trout <em>Salmo trutta</em>, an exotic species that has been reported to prey on several species of lamprey. Prior to its establishment, relatively few fish in these streams would have been capable of feeding on large ammocoetes or adult lampreys.

South America forms the greater part of the Neotropical faunal realm, which extends northward through Central America to tropical southern Mexico. Although making up only 12% of the world’s land area, South America is the richest continent for virtually all organismal groups, including vertebrates. For example, of the known 23,250 species of fish (Eschmeyer, 1998), 41% or 9,530 species are freshwater, and of these, more than 2,800 species (29%) are in South America (Moyle and Cech, 2000). A comparable level of diversity exists for amphibians and birds. Of Earth’s 5,900 species of amphibians, at least 1,749 or 30% occur in South America (Duellman, 1999a, 1999b; Köhler et al., 2005; www.amphibiaweb.org). More than 3,200 (or nearly 32%) of Earth’s 9,900 species of birds occur in South America (Sibley and Monroe, 1990). For reptiles and mammals, diversity is only slightly lower; at least 1,560 (19%) of 8,240 reptile species (Uetz and Etzold, 1996; www.reptiledatabase. org), and 1,037 (19%) of 5,416 mammal species (Nowak, 1999; Wilson and Reeder, 2005) are found in South America. Four major geological events or features are important to understanding South America’s contemporary zoogeography. The first was the breakup of Pangea, and then of Gondwana. South America and Africa remained close for an extended period of the Mesozoic, and thus share important similarities in their faunas, including groups not fully evolved at the time of separation. South America also maintained connections to other Gondwanan continents, directly with Antarctica, indirectly with Australia, until the early Cenozoic. The second major feature was South America’s long period of isolation in the Cenozoic, particularly from North America pending establishment of the late Pliocene land bridge after 3 Ma (million years before present). The latter resulted in “The Great American Interchange” (Webb, 1976; Marshall et al., 1982), which had profound consequences for the fauna. The third major feature of South America has been the Andes, which, in addition to modifying climate, have been a center of speciation, a dispersal route, and a barrier. The cordillera has had an overriding effect on distributions and histories of both past and current biotas on the continent.

Herons and egrets commonly cause damage at aquaculture facilities and recreational fishing waters where fish are held at high densities. Fish-eating birds also can have an impact on intensively managed sport fisheries. Damage occurs when herons and egrets feed on fish purchased and released for recreational sport fishing activities. Values of these fish can be quite high given the intensity of management activities and the direct relationship of fishery quality to property value. Herons and egrets are freshwater or coastal birds of the family Ardeidae. Herons and egrets discussed in this section are all piscivorous. They are opportunistic feeders, however, and will consume small amphibians, insects, and reptiles. Due to these food preferences, herons and egrets are attracted to shallow lakes and human-made impoundments. Native bird species are covered under the Migratory Bird Treaty Act (MBTA) and given federal protection. Depredation permits can be obtained through the U.S. Fish and Wildlife Service. In addition, individual states may require their own permits for legal take of these bird species.