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Relevant bibliographies by topics / Folded Peptides / Dissertations / Theses

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Dissertations / Theses on the topic 'Folded Peptides'

Author: Grafiati

Published: 6 September 2023

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1

Hagarman, Andrew Michael Schweitzer-Stenner Reinhard. "Conformations of unfolded and partially folded peptides and proteins probed by optical spectroscopy /." Philadelphia, Pa. : Drexel University, 2010. http://hdl.handle.net/1860/3313.

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2

Cline, Lauren Latshaw Waters Marcey L. "Design of well-folded beta-hairpin peptides for molecular recognition of RNA and improved resistance to proteolysis." Chapel Hill, N.C. : University of North Carolina at Chapel Hill, 2009. http://dc.lib.unc.edu/u?/etd,2605.

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Thesis (Ph. D.)--University of North Carolina at Chapel Hill, 2009.<br>Title from electronic title page (viewed Oct. 5, 2009). "... in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Chemistry. " Discipline: Chemistry; Department/School: Chemistry.

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3

Lin, Yan. "Studies on novel bioactive peptides and their precursors from the skin secretion of the broad-folded frog, Hylarana latouchii." Thesis, Queen's University Belfast, 2014. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.678835.

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Since ancient times, substances derived from amphibian skins have been recognised to possess various medicinal properties, In recent years, the peptides from amphibian skin have attracted extensive attention for their profound significance in providing clues directed toward novel drug development, for better understanding of miscellaneous physiological and pathological processes, for elucidation of phylogenetic relationships and for improving taxonomy. Previously, the chemical complexity of the defensive skin secretion of the broad-folded frog, Hylarana latouchii, has not been studied in detai

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4

Merk, Natalie D. [Verfasser], Thomas [Akademischer Betreuer] Kiefhaber, and Michael [Akademischer Betreuer] Groll. "Dynamics in Folded and Unfolded Peptides and Proteins Measured by Triplet-Triplet Energy Transfer / Natalie D. Merk. Gutachter: Michael Groll ; Thomas Kiefhaber. Betreuer: Thomas Kiefhaber." München : Universitätsbibliothek der TU München, 2015. http://d-nb.info/1069127833/34.

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5

Neumaier, Sabine [Verfasser], Thomas Akademischer Betreuer] Kiefhaber, Wolfgang [Akademischer Betreuer] [Zinth, and Michael [Akademischer Betreuer] Groll. "Fast Conformational Dynamics in Folded Peptides and Proteins Measured by Triplet-Triplet Energy Transfer / Sabine Neumaier. Gutachter: Wolfgang Zinth ; Michael Groll ; Thomas Kiefhaber. Betreuer: Thomas Kiefhaber." München : Universitätsbibliothek der TU München, 2013. http://d-nb.info/1047185423/34.

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6

McDonnell, Kevin A. (Kevin Andrew) 1973. "Towards incorporation of catalytic function into small folded peptide scaffolds." Thesis, Massachusetts Institute of Technology, 2001. http://hdl.handle.net/1721.1/8626.

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Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Chemistry, 2001.<br>Includes bibliographical references.<br>This thesis describes the development of iterative and combinatorial methods for identifying small peptide scaffolds able to support catalytic function. The incorporation of thiamine coenzyme functionality into small peptide scaffolds is achieved through the use of a coenzyme amino acid chimera (Taz). This thiazole amino acid can be alkylated to generate the active thiazolium species. A series of designed peptides containing the Taz coenzyme chimera revealed that an incr

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7

Preuss, Monika Kathrin. "Recognition of secondary structure by the molecular chaperonin groEL." Thesis, Imperial College London, 1999. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.313410.

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8

Atkinson, Holly J. "The structural and functional landscape of protein superfamilies: From the thioredoxin fold to parasite peptidases." Diss., Search in ProQuest Dissertations & Theses. UC Only, 2009. http://gateway.proquest.com/openurl?url_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:dissertation&res_dat=xri:pqdiss&rft_dat=xri:pqdiss:3359576.

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9

Walter, Monika. "Die parallele beta-Helix der Pektat-Lyase aus Bacillus subtilis : Stabilität, Faltungsmechanismus und Faltungsmutanten." Phd thesis, Universität Potsdam, 2002. http://opus.kobv.de/ubp/volltexte/2005/147/.

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Die Pektat-Lyasen gehören zu einer Proteinfamilie, die meistens von pflanzenpathogenen Mikroorganismen sekretiert werden. Die Enzyme katalysieren den Abbau von Polygalakturonsäure, einem Hauptbestandteil in <br /> pflanzlichen Mittellamellen und Primärzellwänden. Der Abbau der alpha-1,4-verbrückten Galakturonsäurereste erfogt durch eine beta-Eliminierungsreaktion, dabei entsteht ein Produkt mit einer ungesättigten C4-C5 Bindung am nicht reduzierenden Ende, das durch spektroskopische Messungen beobachtet werden kann. Für die enzymatische Reaktion der Pektat-Lyasen ist Calcium nötig und das pH-O

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10

Righetto, Irene. "Towards "Systems Biotechnology": identification, characterization and design/engineering of protein interaction motifs/domains mediating regulatory signals." Doctoral thesis, Università degli studi di Padova, 2017. http://hdl.handle.net/11577/3426306.

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In silico investigation on protein domains structure and linear/structural motifs can strongly boost functional analyses and technological design. Protein surface features study is crucial to understanding Protein-Protein Interactions (PPI); in particular, surface and pockets conservation and variation, in terms of hydrophobicity, steric hindrance and electrostatics can act as driving forces in protein evolution and functional specialization. Therefore, molecular modeling and structure comparison techniques play an important role in shedding light on “protein behavior” and this PhD work too

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11

Basuroy, Krishnayan. "Structural Studies on Hybrid Peptides : Crystallographic Characterization of Sequences Containing Backbone Homologated, Monosubstituted, Unconstrained Gamma Amino Acid Residues." Thesis, 2013. https://etd.iisc.ac.in/handle/2005/4578.

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X-ray crystallographic studies of designed peptides provide definitive proof of the success of a design strategy and yield essential structural information that can be utilized in the future design of biologically and structurally important polypeptides. The ability to create locally folded, hydrogen bonded structures in short peptide oligomers is important for peptide design strategies, which rely on the use of folding nuclei in the construction of protein secondary structure modules like helices and β-hairpins. The realization that backbone homologated amino acids, specifically  and  resid

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12

Broom, Robert Aron. "From Peptides to Proteins: Exploring Modular Evolution Through the Beta-Trefoil Fold." Thesis, 2010. http://hdl.handle.net/10012/5000.

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Understanding the origin of protein folds, and the mechanism by which evolution has generated them, is a critically important step on a path towards rational protein design. Modifying existing proteins and designing our own novel folds and functions is a lofty but achievable goal, for which there are many foreseeable rewards. It is believed that modern proteins may have arisen from a primordial set of peptide precursors, which were initially only pseudo-stable or stable only as complexes with RNA, and later were able to self-assemble into multimeric complexes that resembled modern folds. In

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13

McLaughlin, Megan. "Exploration of Peptide Recognition using Directed Evolution of the PDZ Domain Fold." Thesis, 2013. http://hdl.handle.net/1807/35648.

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The PDZ domain family is one of the most abundant peptide recognition modules in metazoan proteomes. Characterization of natural PDZ domains has provided insight into the structural basis and diversity of peptide recognition by this fold. In order to test the limits of the current model, I evolved synthetic PDZ domains. Based on the Erbin PDZ domain and selected for binding to pep- tides with different position-2 residues, synthetic variants were characterized using high throughput peptide profiling. This approach generated insight into subclass specificities in the most common natural specifi

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14

"The structural and functional landscape of protein superfamilies: From the thioredoxin fold to parasite peptidases." UNIVERSITY OF CALIFORNIA, SAN FRANCISCO, 2009. http://pqdtopen.proquest.com/#viewpdf?dispub=3359576.

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15

Yu, Chin-Sheng, and 游景盛. "Fine-grained Protein Fold Assignment by Support Vector Machines using generalized n-peptide Coding Schemes and jury voting from multiple parameter sets." Thesis, 2002. http://ndltd.ncl.edu.tw/handle/57177749858969618310.

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碩士<br>國立清華大學<br>生命科學系<br>90<br>Fold assignment directly from sequences is valuable in the prediction of protein structures. Unlike secondary structure prediction, where a local coding scheme of sequence information will usually suffice, fold identification calls for global protein descriptors as well local descriptors for the whole protein sequences. Previous studies have shown that machine learning methods can yield reasonable prediction accuracy of fold assignment directly from sequences by a variety of global sequence coding schemes. In this thesis, using global protein descriptors based on

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