Relevant bibliographies by topics / Fixed and Paraffin Embedded Tissues

Academic literature on the topic 'Fixed and Paraffin Embedded Tissues'

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Published: 11 March 2023

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Journal articles on the topic "Fixed and Paraffin Embedded Tissues"

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Giusti, Laura, and Antonio Lucacchini. "Proteomic studies of formalin-fixed paraffin-embedded tissues." Expert Review of Proteomics 10, no. 2 (April 2013): 165–77. http://dx.doi.org/10.1586/epr.13.3.

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Díaz-Cano, Salvador J., and Stephen P. Brady. "DNA Extraction from Formalin-fixed, Paraffin-embedded Tissues." Diagnostic Molecular Pathology 6, no. 6 (December 1997): 342–46. http://dx.doi.org/10.1097/00019606-199712000-00006.

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Liapis, Helen, and Karen Hutton. "Detection of Integrins in Formalin-fixed, Paraffin-embedded Tissues." Journal of Histochemistry & Cytochemistry 45, no. 5 (May 1997): 737–41. http://dx.doi.org/10.1177/002215549704500512.

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Integrins are heterodimeric transmembrane receptors, which are expressed in many cells. In vitro experiments have demonstrated that integrins may be important in tumor progression and organ development. The functions of integrins were previously studied in cell cultures and their tissue expression was detected by immunofluorescence or immunoperoxidase in frozen sections. The purpose of this study was to determine the optimal conditions for detection of integrins in formalin-fixed, paraffin-embedded tissues. We utilized microwave heating and enzyme digestion in routinely processed, surgically removed tissues. Our results demonstrate that integrins can be reliably detected in archival material. This approach will facilitate further investigation of the role played by integrins in human malignancies and in developmental processes.
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Kerns, B. J., P. A. Jordan, M. B. Moore, P. A. Humphrey, A. Berchuck, M. F. Kohler, R. C. Bast, J. D. Iglehart, and J. R. Marks. "p53 overexpression in formalin-fixed, paraffin-embedded tissue detected by immunohistochemistry." Journal of Histochemistry & Cytochemistry 40, no. 7 (July 1992): 1047–51. http://dx.doi.org/10.1177/40.7.1607637.

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Mutation and overexpression of the p53 gene have been noted in a wide range of human cancers and are thought to play a role in malignant transformation. Previously, immunohistochemical detection of p53 has been possible only in fresh-frozen tissues. We examined p53 expression in paraffin-embedded tissues from 50 epithelial ovarian cancers and 25 primary breast cancers with a modified immunohistochemical (IHC) technique developed in this laboratory, using monoclonal antibody (MAb) PAb1801. The 75 cases were selected from a group of patients in whom the expression levels had already been assessed in a fresh-tissue IHC assay. An identical staining reactivity was observed in both formalin-fixed, paraffin-embedded tissue and fresh-frozen tissue in 48 of 50 (96%) epithelial ovarian cancers and in 23 of 25 (92%) primary breast cancers. Immunodetection of p53 in paraffin-embedded tissue blocks will be a useful alternative to the standard fresh-tissue assay and can accurately reflect the level of p53 expression in human tumors.
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Beckstead, J. H. "A simple technique for preservation of fixation-sensitive antigens in paraffin-embedded tissues." Journal of Histochemistry & Cytochemistry 42, no. 8 (August 1994): 1127–34. http://dx.doi.org/10.1177/42.8.8027531.

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Immunohistochemistry is a powerful tool for tissue diagnosis and research. Although the frozen section has remained the gold standard for this important approach to evaluation of antigens in tissues, there is widespread acknowledgment of many limitations. Routine paraffin-embedded sections ware widely used for morphological examination of tissues but are not optimal for antigen preservation. In this study, paraffin-embedded tissues fixed with a simple buffer containing zinc as the primary fixative were compared with tissues fixed with routine formalin, zinc-formalin, paraformaldehyde, ethanol, a variety of commercial (non-formalin-containing) fixatives that have been recommended for reduced toxicity and improved antigen survival, and frozen sections. Human lymphoid tissues and a group of antibodies to antigens (CD1, CD4, CD7, CD8, CD19) usually preserved only in frozen tissue were used as a model system. Fixation in a simple solution of zinc acetate and zinc chloride in a Tris-Ca acetate buffer resulted in antigen preservation comparable to that in frozen sections with antibodies to these cell surface markers. Morphological preservation was comparable to formalin-fixed sections. The work presents a new method that represents the closest approach yet to a technique that combines optimal antigenic survival with the convenience and morphological preservation of traditional formalin-fixed tissue embedded in paraffin.
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Whiteland, J. L., S. M. Nicholls, C. Shimeld, D. L. Easty, N. A. Williams, and T. J. Hill. "Immunohistochemical detection of T-cell subsets and other leukocytes in paraffin-embedded rat and mouse tissues with monoclonal antibodies." Journal of Histochemistry & Cytochemistry 43, no. 3 (March 1995): 313–20. http://dx.doi.org/10.1177/43.3.7868861.

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We describe a method for immunohistochemical localization of T-cells, CD4+ T-cells, CD8+ T-cells, B-cells, activated lymphocytes, major histocompatibility complex (MHC) class II antigens, macrophages, dendritic cells, and granulocytes in rat and mouse tissue fixed in periodate-lysine-paraformaldehyde (PLP) and embedded in paraffin. Rat and mouse spleen and eyes were fixed in PLP for 18-24 hr, rapidly dehydrated, infiltrated under vacuum with paraffin at 54 degrees C, sectioned, and stained with appropriate monoclonal antibodies (MAbs). Sections of PLP-fixed, paraffin-embedded spleen were compared with acetone-fixed frozen spleen sections with respect to morphology and staining quality. Nine of 10 MAbs to rat antigens and eight of nine MAbs to mouse antigens stained paraffin sections equally or more intensely than frozen sections. The two MAbs that showed weaker staining still gave good staining on paraffin sections. Paraffin-embedded rat and mouse eyes were easier to section serially than frozen eyes, showed superior morphology, and individually stained cells were readily identified. Therefore, a combination of PLP fixation and low-temperature paraffin embedding permits detection of the major types of immune cell in rat and mouse tissues while maintaining good morphology, particularly in diseased, damaged, or delicate tissues.
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Legrand, Beatrice, Philippe de Mazancourt, Michel Durigon, Véronique Khalifat, and Karine Crainic. "DNA genotyping of unbuffered formalin fixed paraffin embedded tissues." Forensic Science International 125, no. 2-3 (February 2002): 205–11. http://dx.doi.org/10.1016/s0379-0738(01)00641-7.

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Blonder, Josip, and Timothy D. Veenstra. "Clinical Proteomic Applications of Formalin-Fixed Paraffin-Embedded Tissues." Clinics in Laboratory Medicine 29, no. 1 (March 2009): 101–13. http://dx.doi.org/10.1016/j.cll.2009.01.006.

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Gámez‐Pozo, Angelo, Iker Sánchez‐Navarro, Nuria Ibarz Ferrer, Fernando García Martínez, Keith Ashman, and Juan Ángel Fresno Vara. "High‐Throughput Phosphoproteomics from Formalin‐Fixed, Paraffin‐Embedded Tissues." Current Protocols in Chemical Biology 4, no. 2 (June 2012): 161–75. http://dx.doi.org/10.1002/9780470559277.ch110242.

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Farragher, Susan M., Austin Tanney, Richard D. Kennedy, and D. Paul Harkin. "RNA expression analysis from formalin fixed paraffin embedded tissues." Histochemistry and Cell Biology 130, no. 3 (August 5, 2008): 435–45. http://dx.doi.org/10.1007/s00418-008-0479-7.

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Dissertations / Theses on the topic "Fixed and Paraffin Embedded Tissues"

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Guo, Tong. "Proteome analysis of formalin-fixed and paraffin-embedded tissue." College Park, Md. : University of Maryland, 2008. http://hdl.handle.net/1903/8062.

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Thesis (Ph. D.)--University of Maryland, College Park, 2008.
Thesis research directed by: Dept. of Chemistry and Biochemistry. Title from t.p. of PDF. Includes bibliographical references. Published by UMI Dissertation Services, Ann Arbor, Mich. Also available in paper.
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Clift, Sarah J. "Standardization and validation of an immunoperoxidase test for African horsesickness virus using formalin-fixed, paraffin-embedded tissues." Diss., University of Pretoria, 2009. http://hdl.handle.net/2263/24626.

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The aim of this study was to standardize and validate an immunohistochemical test for the routine diagnosis of African horsesickness in horses. Hamblin developed the primary anti- African horsesickness virus serum that I used and the avidin-biotin complex detection system was employed. During the standardization process I demonstrate that lung, heart and spleen samples are the most reliable. I also show that it is not necessary to take multiple samples per organ, because the AHSV-positive signal is generally widespread throughout the lung and heart, in particular. In order to validate the technique, samples from 118 negative and 128 positive horse cases, including all nine known serotypes, were immunostained. All of the positive cases were confirmed by means of virus isolation. Negative horse samples were obtained from countries where African horsesickness does not occur. None of the negative cases stained positive and all the positive cases were correctly identified. Therefore, there was 100 % concordance between immunohisto chemistry (when applied to formalin-fixed, paraffin-embedded heart and/or lung and/or spleen tissues from positive horse cases that had been archived for less than 10 years) and virus isolation results. Heart and lung had consistently more positive signal than spleen. The Hamblin antiserum did not cross-react with closely-related orbiviruses (specifically equine encephalosis virus and bluetongue virus) in selected horse and sheep tissues, respectively. Characteristic positive staining was observed in lung, heart and spleen samples from two dogs that died of African horsesickness. Positive signal was not affected by long-term storage in formaldehyde (up to 365 days). Also, specific positive staining could be detected in heart and/or lung and/or spleen samples in more than 95 % of positive horses where tissue blocks had been stored for between 10 and 83 years. The principal target cells in the horse and dog cases were microvascular endothelial cells, intravascular monocyte-macrophages and, to a lesser extent, interstitial macrophages in lung, spleen and liver, in particular. Positive staining is intracytoplasmic with a bead/dot and/or granular character. Beads, dots or granules may occur singly or in clusters. Occasionally, linear deposits of positive signal delineate segments of capillary vessels. The veterinary pathologist must look for characteristic positive signal in target cells, because, occasionally, certain bacteria (Rhodococcus equi and Helicobacter sp.) cross-react with the Hamblin antiserum. Clearly, the test is highly sensitive, specific and robust, sufficiently so for the routine diagnosis of African horsesickness virus.
Dissertation (MSc)--University of Pretoria, 2008.
Paraclinical Sciences
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Clift, Sarah Jane. "Standardization and validation of an immunoperoxidase test for African horsesickness virus using formalin-fixed, paraffin-embedded tissues." Pretoria : [s.n.], 2008. http://upetd.up.ac.za/thesis/available/etd-05132009-173308/.

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Viljoen, Rabia. "Optimisation of sample preparation for DNA extraction from formalin fixed paraffin embedded tissues of unresolved sudden unexpected death cases." Master's thesis, Faculty of Health Sciences, 2021. http://hdl.handle.net/11427/33072.

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A retrospective case review revealed an increase in sudden unexpected death (SUD) admittance at Salt River Mortuary (SRM) between 2014 and 2018, and that 40 % of SUD occurred in young individuals between the ages of 1 and 40 years old (SUDY). Despite extensive investigations, the cause of death remained undetermined in 26 % of SUDY cases. These dormant cases may benefit from retrospective post-mortem molecular autopsies for investigation into genetic causes of death. Often, formalin fixed paraffin embedded tissues (FFPETs) are the only archival sources of DNA available for retrospective analyses. This study aimed to optimise DNA recovery from FFPETs for potential use in molecular autopsies of unresolved SUDY cases. To this end, DNA was extracted from FFPET sections using the QIAamp® DNA FFPE tissue kit; the thickness and number of sections were varied. DNA was assessed using spectrophotometry, real-time PCR and digital capillary electrophoresis. Results showed that finer sectioning (1-µm thick as compared to 3-µm and 5-µm thick), improved DNA concentrations, purities and DNA fragment lengths. Increasing the number of 1-µm thick sections from 30 to 100, significantly improved DNA yield. DNA was not significantly more degraded for FFPETs stored for up to three years, which holds promise in the effectiveness of the technique for aged samples. The DNA extraction method developed in this study yielded a median of 320 ng (287 ng - 698 ng) of DNA with 55 % of DNA fragments being at least 400 bp in size. These results are especially informative for downstream molecular analyses, indicating that genotyping or sequencing assays need to be designed to target amplicons less than 400 bp in size. The degraded nature of the FFPET samples also suggests that massively parallel sequencing might be suited for downstream molecular analysis for determining cause of death in unresolved SUDY cases.
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Hutamo, Kutlwano Aggrineth. "Typing of Mycobacterium bovis in formalin-fixed, paraffin-embedded tissues from selected wildlife species in the Kruger National Park, South Africa." Diss., University of Pretoria, 2012. http://hdl.handle.net/2263/29674.

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Mycobaterium bovis is the causative agent of bovine tuberculosis (BTB) and it is a member of the Mycobacterium tuberculosis complex (MTBC). This bacterium has a wide host range of which, cattle is considered as the maintenance host. Humans, goats, wildlife, cats, dogs and lions are also susceptible to the bacterium and are considered putative spillover hosts as infection is not confined in these hosts. Mycobacterium bovis is prevalent in developing countries especially in farmed animals. This presents a problem since BTB is a zoonosis. People living in close contact with infected cattle or those who drink unpasteurized milk are at risk of infection. About 10% of cases of human tuberculosis are thought to be caused by M. bovis. In some instances, wildlife provides a reservoir for the pathogen and transmits it to cattle in farms and poses further risk to humans at the wildlife/livestock/human interface. Certain countries like the United Kingdom where BTB was previously eradicated are experiencing substantial increase in BTB infection. This is thought to be a result of wildlife reservoirs that infect farmed animals, especially cattle. Such reservoirs make eradication of the disease extremely difficult and require programmes to be put in place to control spread of the disease. This makes M. bovis a pathogen of economic importance since the programmes may be costly. In addition, wildlife that is infected cannot be exported and this further affects the economy negatively. In order to control the spread of the pathogen, it is essential to determine the source of infection. However, it is difficult to determine the source or to track the spread of BTB especially in wildlife where animals have unrestricted movement. The inability to conduct epidemiological studies of BTB may be a result of the lack of molecular typing methods that allow bacteria to be identified to strain level rapidly and fairly simpler than culture, thus providing much needed information about the pathogen. In recent years, typing of M. bovis isolates to strain level has been made possible by the development of PCR-based technologies such as IS6110 typing and spoligotyping. These technologies were however, found to be unsuitable for differentiating certain species in the MTBC. Newer technologies based on the variable number of tandem repeats (VNTRs) in organisms have been developed and allow for the differentiation of members in the MTBC, which have a high level of genome homology. These technologies include multiple-locus variable number tandem repeat analysis (MLVA) and mycobacterial interspersed repetitive unit (MIRU)-VNTR analysis. It was also discovered that mycobacteria have genomic regions of difference (RD) that could be used to identify the different species of bacteria in the MTBC. Retrospective studies may play a key role in tracing the source of diseases and following the pattern of transmission. However, in most instances, no fresh samples are available for such studies. For this reason, formalin-fixed paraffin-embedded (FFPE) tissue from wildlife in the Kruger National Park (KNP) was used for conducting a retrospective study aimed at determining the epidemiology of M. bovis in the KNP. However, amplification of DNA derived from FFPE tissue for PCR based techniques has been found to be a difficult exercise and not many standard protocols have been developed and validated for the use of such DNA. In this study, different methods of extraction were used to obtain DNA from FFPE tissue since it is difficult to obtain high quality DNA from such tissue, which is degraded. Formaldehyde, the main component of formalin which is used to fix tissue samples, causes degradation and cross-linking of DNA. In addition, previous studies are inconsistent with regards to the best method to use when extracting DNA from FFPE tissue. Three PCR-based techniques were used to type or identify the isolates in order to standardize a protocol for use in typing isolates from FFPE tissue. These techniques included analysis of the RDs, VNTR based methods i.e. MLVA and MIRU-VNTR and spoligotyping. Since there are many factors that influence the quality of FFPE tissue, samples confirmed BTB positive by VNTR analysis, spoligotyping and IS6110 analysis were used in order to optimize a PCR for FFPE tissue. Furthermore, in order to serve as control samples for spoligotyping and analysis of the RDs, DNA obtained from fresh tissue was also used in the study. Despite the various methods used to extract and to type DNA, the DNA from FFPE tissue provided unspecific results that did not allow for an informative retrospective study of M. bovis. This may be due to the fact that the DNA used had a high degree of degradation from prolonged fixation in formalin. Although M. bovis could not be typed in FFPE tissues, it could be identified by analysis of the regions of difference, more specifically the RD9 region. Amplification of RD9 is thus recommended for use in retrospective studies for diagnostic purposes, especially in cases where highly degraded DNA is used. This region (RD9) should however, only be used as a presumptive diagnosis since RD9 also identifies M. africanum, M. microti, M. pinnipedii, M. caprrae and M. bovis BCG. However, RD9 specifically excludes M. tuberculosis. In the SA context, particularly in the KNP, this allows for some sound inferences since the animals are likely to be infected with M. bovis as opposed to M. tuberculosis. This study highlighted statements in previous studies where it was stated that fixation of tissue in formalin should be done in such a way to reduce degradation of DNA in FFPE tissue in order to allow for its use in retrospective molecular studies which may be very insightful in determining the epidemiology of diseases that are difficult to track and/or control. Copyright
Dissertation (MSc)--University of Pretoria, 2012.
Veterinary Tropical Diseases
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Leslie, Jane Alison. "A pilot study for the use of pancreatic ductal adenocarcinoma formalin-fixed paraffin-embedded tissue in BAC CGH microarrays." Thesis, University of Liverpool, 2007. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.479043.

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Damjanovic, Vesterlund Justina. "Establishment of immunohistochemical double staining on formalin fixed paraffin embedded tissue samples with Pax 5, PD1, PDL1 and PDL2." Thesis, Uppsala universitet, Institutionen för kemi - BMC, 2016. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-297184.

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Matilda, Rentoft. "The use of formalin fixed paraffin embedded tissue and global gene expression profiling for increased understanding of squamous cell carcinoma of the tongue." Doctoral thesis, Umeå universitet, Patologi, 2012. http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-54005.

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Head and neck cancer is the 6th most common malignancy worldwide, with tumours of the tongue being one of the most prevalent sites. Despite advances in surgery and radiotherapy, the five-year survival has not changed during the last decades and remains at approximately 50%. Identification of novel biomarkers for more personalized treatment is important for increasing survival in these patients. One of the most commonly used methods in the search for new biomarkers is microarray analysis. A substantial limitation with this technique is the requirement for fresh frozen samples from which high quality RNA can be extracted. This becomes particularly problematic when attempting to discover differences associated with individual sub-types or rare cancers. Recent developments, including the DASL microarray platform, have provided the possibility of analysing RNA of poorer quality from formalin fixed paraffin embedded (FFPE) samples. FFPE is the standard way of preserving tissue from patients and millions of samples are stored around the world. In this thesis we have evaluated the use of FFPE samples and global gene expression profiling for increasing basic knowledge in a subgroup of oral cancer patients with tumours of the tongue. As confirmation of microarray results using qPCR is of outmost importance for conclusive data evaluation, we first aimed at finding a housekeeping gene stably expressed across malignant and non-malignant FFPE oral tissue. TUBA6, which belongs to the tubulin family was detected as being the most stable out of eight possible genes and was thus used for qPCR normalization throughout the following studies. We have performed three separate microarray experiments. Initially only a focused DASL array covering 502 cancer related genes was available and we used it to analyze a smaller cohort of patients and controls (n=36). A similar cohort (n=29) was also analyzed for expression of 836 micoRNAs. In 2009 a whole genome DASL array was launched, covering over 20,000 genes, and all tongue tumour samples available between 1997 and 2010 (n=87) were analysed using this array. Similar to other research groups we observed very high replicate reproducibility using both DASL arrays. When using the microRNA array and the whole genome DASL array an effect of sample quality on the detected expression level of individual genes was noticed. While the expression of some genes severely decreased with a decrease in sample quality others were not changed. This will impair normalization, leading to a residual non-biological variation within the data. Based on our findings we have presented some recommendations for minimizing the effect of sample quality and maximizing the level of biologically relevant information obtained from these experiments, e.g. ensuring that samples in groups to be compared are of the same quality range. For the microRNA data we also introduced an additional normalization step to the standard normalizations. We could show that lists of differentially expressed genes generated when taking these precautions were enriched for genes involved in cancer related processes and contained for tongue carcinoma previously identified changes. A number of differentially expressed genes, novel for tongue carcinoma, were also confirmed in high quality fresh frozen samples, including BCL2A1 (apoptosis), CXCL10 (immune response), SLC2A6 (energy transport) and miR-424 (angiogenesis). In conclusion microarrays can be used to analyze FFPE samples but should be performed with care. Standard normalization methods will not remove the variation introduced by samples being of different quality, leading to spurious results. Taking a few precautions, however, led to the identification of differentially expressed genes relevant in tumour development and maintenance. The recommendations we make can facilitate design of future studies using FFPE samples. The genes we identified as being differentially expressed in tumour tissue now need to be further evaluated for their potential as biomarkers in tongue carcinoma.
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Lüder, Ripoli Florenza [Verfasser]. "Comparison of fresh frozen vs. formalin-fixed, paraffin-embedded specimens and the expression profiling of 16 target genes in neoplastic and non-neoplastic canine mammary tissues using a multiplex branched-DNA assay / Florenza Lüder Ripoli." Hannover : Bibliothek der Tierärztlichen Hochschule Hannover, 2016. http://d-nb.info/1125394560/34.

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Rossouw, Sophia Catherine. "Optimisation of proteomics techniques for archival tumour blocks of a South African cohort of colorectal cancer." University of Western Cape, 2020. http://hdl.handle.net/11394/8036.

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Philosophiae Doctor - PhD
Tumour-specific protein markers are usually present at elevated concentrations in patient biopsy tissue; therefore tumour tissue is an ideal biological material for studying cancer proteomics and biomarker discovery studies. To understand and elucidate cancer pathogenesis and its mechanisms at the molecular level, the collection and characterisation of a large number of individual patient tissue cohorts are required. Since most pathology institutes routinely preserve biopsy tissues by standardised methods of formalin fixation and paraffin embedment, these archived, FFPE tissues are important collections of pathology material, often accompanied by important metadata, such as patient medical history and treatments. FFPE tissue blocks are conveniently stored under ambient conditions for decades, while retaining cellular morphology due to the modifications induced by formalin.
2022
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Books on the topic "Fixed and Paraffin Embedded Tissues"

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Al-Mulla, Fahd, ed. Formalin-Fixed Paraffin-Embedded Tissues. Totowa, NJ: Humana Press, 2011. http://dx.doi.org/10.1007/978-1-61779-055-3.

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Formalin-fixed paraffin-embedded tissues: Methods and protocols. New York: Humana Press, 2011.

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Formalin-Fixed Paraffin-Embedded Tissues: Methods and Protocols. Humana Press, 2016.

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Lucas, Sebastian B. Histopathology of fungal disease. Edited by Christopher C. Kibbler, Richard Barton, Neil A. R. Gow, Susan Howell, Donna M. MacCallum, and Rohini J. Manuel. Oxford University Press, 2017. http://dx.doi.org/10.1093/med/9780198755388.003.0040.

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Histopathology has a critical role in the diagnosis of fungal infections. Often it is the first or only sample of a lesion. A rapid, confident diagnosis can significantly affect patient management. However, the morphologies of yeast and hyphae are not necessarily diagnostic at the genus or species level, and the experience of histopathologists is variable. A primary decision is whether the lesion is fungal or another infection or not infectious at all, and the next is whether the fungus is a yeast or a hyphal (mould) infection. Further histopathological genus and species discrimination can be made in many cases, but not all. Increasingly, molecular diagnostic DNA technology works effectively on formalin-fixed paraffin-embedded biopsy/autopsy material, and such information can be added to the multidisciplinary input for an optimal diagnosis.
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Book chapters on the topic "Fixed and Paraffin Embedded Tissues"

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Bonin, Serena, and Giorgio Stanta. "RNA Extraction from Formalin-Fixed Paraffin-Embedded Tissues." In Guidelines for Molecular Analysis in Archive Tissues, 57–61. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-17890-0_12.

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Cirombella, Roberto, and Andrea Vecchione. "MicroRNA Extraction from Formalin-Fixed Paraffin-Embedded Tissues." In Guidelines for Molecular Analysis in Archive Tissues, 71–74. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-17890-0_15.

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Becker, Karl-Friedrich, and Christina Schott. "Protein Extraction from Formalin-Fixed Paraffin-Embedded Tissues." In Guidelines for Molecular Analysis in Archive Tissues, 245–48. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-17890-0_37.

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Liu, Aihua, and Xiaowei Xu. "MicroRNA Isolation from Formalin-Fixed, Paraffin-Embedded Tissues." In Methods in Molecular Biology, 259–67. Totowa, NJ: Humana Press, 2011. http://dx.doi.org/10.1007/978-1-61779-055-3_16.

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Fukushima, H., M. Ota, K. Tanaka, A. Ichinose, K. Sato, and K. Honda. "DNA typing from formalin-fixed, paraffin-embedded tissues." In Advances in Forensic Haemogenetics, 81–83. Berlin, Heidelberg: Springer Berlin Heidelberg, 1992. http://dx.doi.org/10.1007/978-3-642-77324-2_22.

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Bonin, Serena, Patricia J. T. A. Groenen, Iris Halbwedl, and Helmut H. Popper. "DNA Extraction from Formalin-Fixed Paraffin-Embedded (FFPE) Tissues." In Guidelines for Molecular Analysis in Archive Tissues, 33–36. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-17890-0_7.

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Stanta, Giorgio, Serena Bonin, and Renè Utrera. "RNA Quantitative Analysis from Fixed and Paraffin-Embedded Tissues." In RNA Isolation and Characterization Protocols, 113–20. Totowa, NJ: Humana Press, 1998. http://dx.doi.org/10.1385/0-89603-494-1:113.

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Stanta, Giorgio, Serena Bonin, and Rosella Perin. "RNA Extraction from Formalin-Fixed and Paraffin-Embedded Tissues." In RNA Isolation and Characterization Protocols, 23–26. Totowa, NJ: Humana Press, 1998. http://dx.doi.org/10.1385/0-89603-494-1:23.

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Faoro, Valentina, and Giorgio Stanta. "Rapid Protein Extraction from Formalin-Fixed Paraffin-Embedded Tissue Samples." In Guidelines for Molecular Analysis in Archive Tissues, 249–51. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-17890-0_38.

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Walch, Axel, Sandra Rauser, and Heinz Höfler. "MALDI Imaging Mass Spectrometry on Formalin-Fixed Paraffin-Embedded Tissues." In Guidelines for Molecular Analysis in Archive Tissues, 293–95. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-17890-0_49.

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Conference papers on the topic "Fixed and Paraffin Embedded Tissues"

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Halliday, Sophia Rachael, Linnea T. Olsson, Alina Hamilton, Sivapriya Ramamoorthy, Jason Kitchen, Erin Kirk, Laura Farnan, et al. "Abstract 2347: Metabolomics profiling of formalin-fixed paraffin-embedded prostate tissues." In Proceedings: AACR Annual Meeting 2021; April 10-15, 2021 and May 17-21, 2021; Philadelphia, PA. American Association for Cancer Research, 2021. http://dx.doi.org/10.1158/1538-7445.am2021-2347.

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Semon, Bryan, Alaa Chriat, Haifeng Wang, Lauren Priddy, Lu Lu, Michael Jaffe, and Gombojav O. Ariunbold. "Rapid, Contact-Free, Multimodal, Non-Linear Optical Imaging for Collagen in Formalin-Fixed Paraffin-Embedded Tendon Tissues." In European Conference on Biomedical Optics. Washington, D.C.: Optica Publishing Group, 2021. http://dx.doi.org/10.1364/ecbo.2021.em1a.27.

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A novel imaging system is developed to overcome the challenge of paraffin contamination in fixed tissues. Single-shot wide-field micro-images are captured to construct large-scale collagen-maps for understanding tendon damage and healing processes.
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Carrick, Danielle Mercatante, Sean Altekruse, Corrine Camalier, Wendy Cozen, Brenda Hernandez, Charles Lynch, Paul McGregor, et al. "Abstract 304: Feasibility study of next-generation sequencing on residual formalin-fixed paraffin-embedded tissues." In Proceedings: AACR Annual Meeting 2014; April 5-9, 2014; San Diego, CA. American Association for Cancer Research, 2014. http://dx.doi.org/10.1158/1538-7445.am2014-304.

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Torun, Hülya, Numan Batur, Buse Bilgin, Omer Tarik Esengur, Kemal Baysal, İbrahim Kulaç, Ihsan Solaroglu, and Mehmet Cengiz Onbasli. "Machine learning-based approach to identify formalin-fixed paraffin-embedded glioblastoma and healthy brain tissues." In Multiscale Imaging and Spectroscopy III, edited by Kristen C. Maitland, Darren M. Roblyer, and Paul J. Campagnola. SPIE, 2022. http://dx.doi.org/10.1117/12.2608957.

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Everson, Richard B., Heather R. Glatt-Deeley, Linda C. Burian, Lorrie A. Perpetua, Upendra P. Hegde, Richard W. Lambrecht, and Mary M. Sanders. "Abstract 3938: Massively parallel sequencing of formalin-fixed, paraffin-embedded tissue." In Proceedings: AACR 102nd Annual Meeting 2011‐‐ Apr 2‐6, 2011; Orlando, FL. American Association for Cancer Research, 2011. http://dx.doi.org/10.1158/1538-7445.am2011-3938.

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Baybayan, Primo, Michael Weiand, Kevin Eng, Guillaume Durin, and Steve Kujawa. "Abstract 3611: SMRT® sequencing of DNA samples extracted from formalin-fixed and paraffin embedded tissues." In Proceedings: AACR 107th Annual Meeting 2016; April 16-20, 2016; New Orleans, LA. American Association for Cancer Research, 2016. http://dx.doi.org/10.1158/1538-7445.am2016-3611.

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Farooq, Umar, Michael J. Gooch, Linda Burian, Prashant Singh, Shirin Karimi, Lorrie A. Perpetua, Mary M. Sanders, and Richard B. Everson. "Abstract 818: Refining and assessing quality for next generation sequencing of formalin-fixed, paraffin-embedded tissues." In Proceedings: AACR 104th Annual Meeting 2013; Apr 6-10, 2013; Washington, DC. American Association for Cancer Research, 2013. http://dx.doi.org/10.1158/1538-7445.am2013-818.

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Kubit, Matthew, Christina Wood-Bouwens, Sue Grimes, John Bell, GiWon Shin, Billy Lau, Mickey Miller, et al. "Abstract 4331: High-throughput whole-genome sequencing of formalin fixed, paraffin-embedded tissues from colorectal cancer patients." In Proceedings: AACR Annual Meeting 2018; April 14-18, 2018; Chicago, IL. American Association for Cancer Research, 2018. http://dx.doi.org/10.1158/1538-7445.am2018-4331.

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Jiang, Zeyu (David), Anne Pedata, Taylor Shingler, Lauren Behman, David Chafin, and William Day. "Abstract 525: Automated microRNA detection in formalin-fixed, paraffin-embedded tissue samples." In Proceedings: AACR Annual Meeting 2014; April 5-9, 2014; San Diego, CA. American Association for Cancer Research, 2014. http://dx.doi.org/10.1158/1538-7445.am2014-525.

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Constantinou, P., B. C. Wilson, and S. Damaskinos. "Hyperspectral unmixing for removing autofluorescence from paraffin-embedded, formalin-fixed tissue sections." In Photonics North 2005, edited by Warren C. W. Chan, Kui Yu, Ulrich J. Krull, Richard I. Hornsey, Brian C. Wilson, and Robert A. Weersink. SPIE, 2005. http://dx.doi.org/10.1117/12.628178.

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Reports on the topic "Fixed and Paraffin Embedded Tissues"

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Everson, Richard, Isaac Powell, Wael Sakr, Sorin Draghici, and Lance Heilbrun. Predicting Prostate Cancer Recurrence by Gene Expression Analysis of Formalin-Fixed, Paraffin Embedded Tissue. Fort Belvoir, VA: Defense Technical Information Center, November 2007. http://dx.doi.org/10.21236/ada484134.

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Schwartz, Ann. Predicting Prostate Cancer Recurrence by Gene Expression Analysis of Formalin-Fixed, Paraffin Embedded Tissue. Fort Belvoir, VA: Defense Technical Information Center, November 2008. http://dx.doi.org/10.21236/ada502504.

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Tompkins, Christina P., Tracey A. Hamilton, John P. Petrall, and Robert K. Kan. Optimization of Glial Fibrillary Acidic Protein Immunoreactivity in Formalin-fixed, Paraffin-Embedded Guinea Pig Brain Sections. Fort Belvoir, VA: Defense Technical Information Center, September 2003. http://dx.doi.org/10.21236/ada443180.

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