Dissertations / Theses: 'Fields of Research – 300000 Agricultural, Veterinary and Environmental Sciences – 300800 Environmental Science'

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Turner, Susan Jane. "Microbiological Indicators of Faecal Contamination in Aquatic Environments." Thesis, University of Auckland, 1996. http://hdl.handle.net/2292/2375.

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1. The aim of this research was to determine appropriate microbial indicator systems for use in monitoring the occurrence and source of faecal contamination in aquatic environments. Particular emphasis has been placed on the identification of indicators which might enable faecal contamination of human origin to be distinguished from that of non-human derivation. Two lines of investigation have been pursued; the use of alternative microbial indicator systems for water quality monitoring, and the development of diagnostic molecular methods for identifying the origin of faecal organisms. 2. Field and treatment plant studies were undertaken to investigate the utility of three indicator systems for monitoring water quality impacts in the coastal area surrounding the discharge from Auckland's North Shore City wastewater treatment plant. F-specific bacteriophage (F-phage) and ratios of F-phage to enterococci and faecal coliforms were examined over a twelve month period in which indicator levels at various stages of the wastewater treatment process were measured. These indicators and levels of Clostridium perfringens spores in sediment were measured in four outfall impact studies. 3. F-phage levels in effluent from the treatment plant (median=2.5 x 102 cfu/l00 ml) were too low to enable their use as source-specific tracers of effluent dispersion. However, higher F-phage levels in raw sewage (median=6.2 x l05 cfu/l00 ml) suggested that phage may be an appropriate indicator of raw sewage contamination in the receiving environment. F-phage was detected in coastal waters remote from the sewage outfall, providing presumptive evidence of sewage contamination entering the sea from sources other than the outfall discharge itself. 4. F-phage/enterococci and F-phage/faecal coliform ratios that were determined for sewage and treated effluent derived from the North Shore plant proved to be highly variable and were therefore unreliable for determining the source faecal contamination. 5. The concentration of Clostridium perfringens spores in sediments did not provide a useful means for tracing the distribution of faecal contaminants in the coastal system because the spore levels were found to be similar throughout the study area. This widespread occurrence of C. perfringens spores prevented identification of defined impact zones for any of the potential sources of faecal contaminants examined. 6. Randomly Amplified Polymorphic DNA (RAPD) analysis was used to investigate whether genetic markers could be identified for Escherichia coli isolates derived from different sources. RAPD profiling was found to be a highly discriminative method able to subtype E. coli strains present in both sewage and in the wastewater stream of a mechanical wood-pulping operation. In the pulp mill effluent, RAPD analysis indicated the presence of a restricted range of E. coli strains compared to the range found in the water intake and sewage effluent discharges. The results obtained provide presumptive evidence for the multiplication of E. coli strains within the wastewater stream. 7. Comparison of RAPD profiles derived from a range of human and environmental E. coli isolates led to the identification of a 1.6-kb marker. present in a subset of human isolates, but found only infrequently in isolates from animal origin. Primers based on sequence information obtained from this region of the genome yielded a direct PCR assay for the 'human' marker. The reliability and utility of the assay was improved when fluorescently-labelled primers and an automated DNA detection system was employed for the analysis of the amplified PCR products. 8. The diagnostic polymorphism was localised to the region immediately downstream of the gene encoding the glycine decarboxylase P-protein (gcvP). Comparison of DNA sequences from this region in 'marker-positive' and 'marker-negative' E. coli isolates revealed an abrupt loss of homology immediately downstream of the transcription termination point of the gcvP gene. The region of non-homology extends for at least 130 base pairs beyond the gcvP transcription terminator. Sequences spanning this region in marker-negative isolates exhibited a high level homology with that determined for E. coli K-12. The origin of the sequence for the same region in marker-positive isolates was unable to be identified. 9. The utility of the marker for environmental monitoring was investigated in a field study of a rural stream receiving bacterial contamination of both human and animal origin. The marker was consistently detected both in isolates derived from sewage effluents and in those found immediately downstream from sewage inputs-despite the presence of a high background of E. coli of animal origin. However the utility of the marker as a sewage-specific tracer was limited by the relatively low numbers of marker-positive d. coli in sewage effluents (approximately 8%). 10. In summary, the work described in this thesis has confirmed the need for multiple indicator systems in water quality monitoring and has identified appropriate areas for further research. The most promising area for future research is in the development of molecular tools which might provide both a better understanding of genetic variation in indicator organisms and enable methods to be developed for the detection of host-specific strains. Location of other polymorphisms likely to be present in the E. coli genome should enable further host-specific markers to be identified which could complement the 'human' marker identified in this study.
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Bates, Andrew John. "Effects of grazing management and pasture composition on the nitrogen dynamics of a dairy farm : a simulation analysis : a thesis submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy at Lincoln University /." Diss., Lincoln University, 2009. http://hdl.handle.net/10182/1360.

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There is an extensive debate on the potential environmental impact of dairy farms and in particular the effect of dairy farms on the nitrogen cycle and the effect that this has on ecosystems. Within New Zealand and in particular in the South Island, the expansion of dairying and the adoption of new dairy systems has led to this becoming an increasingly important issue, locally through its effect on water quality and the environment and nationally and internationally through the production of green house gases. Increases in nitrogen usage at the expense of clover nitrogen fixation, irrigation, stocking rate and the introduction of dairy cows onto light free draining soils previously the preserve of arable or sheep farming has led to concern as to the effect intensive pastoral dairying may have on the nitrogen dynamics of the farm and the environment. This study is designed to assess how changes in grazing management in particular changes in pre-grazing and post-grazing residuals alter the clover/ryegrass balance on the farm and the effect that this has on the farm’s nitrogen dynamics. The effects of qualitative changes in grazing management on pasture composition are well established but little is known of the effect of quantitative changes in pasture management on composition, in particular the effect of grazing residuals. There are a number of detailed models of the physiological processes in the energy and nutrient cycling in plants, animals and the soil. There are a smaller number of whole farm models that through integration and simplification of component models attempt to represent the flux of nutrients though a dairy farm. None of these whole farm models is currently able to model the nitrogen flux through a dairy farm at a sufficient level of resolution to capture differences in pasture composition as these occur spatially, temporally and in response to grazing management. This project sought to better understand the nitrogen dynamics on a dairy farm by constructing and then linking component models – a pasture composition and growth model, a cow model, an excretal return model, a soil model and a water balance model – within a whole farm management schedule. The formal null hypothesis is that the mechanistic, mathematical model constructed for this PhD cannot capture and explain the full range of the changes in soil water content, soil nitrogen status, pasture production and composition and animal production, following the alteration in management of the dairy farm between 2002 and 2004. Individual component models were constructed by the author using the computer software package (Matlab) and validated against data extracted from the literature. The models were then converted into one simulation package using C-sharp as the source code language by Elizabeth Post, Senior Computer Scientist at Lincoln Ventures Ltd, Lincoln, New Zealand and the author. This model was then used to investigate the nitrogen dynamics of a dairy farm: the relationship with pasture composition and whether small changes in pasture residuals make a difference to pasture composition and nitrogen dynamics. Two different simulations were run based on the management practice of Lincoln University Dairy farm (LUDF) over two dairy seasons (2002-03 and 2003-04) and validated against the data recorded on this farm. In 2002-03, 50 cows were over wintered and 580 cows were subsequently milked on 200ha. Post grazing residuals where maintained at 1600-1750KgDM/ha. In 2003-04, 125 cows were overwintered and 635 cows were milked on 200ha with post grazing residuals maintained at 1400KgDm/ha. All models operate on a daily time step. Within the pasture model composition is described by 9 state variables describing different components of the pasture and pasture growth is modelled mechanistically from a calculation of component photosynthesis. A further 9 state variables describe the nitrogen composition of the pasture components. The soil model is a variable two layer, mechanistic representation, parametised for the shallow, stony soils of LUDF. Soil water status is an input for the pasture model while water uptake by the growing plants affects the soil water balance within the soil model. Animal intake and production are modelled mechanistically with model cows described in terms of their age, genetic merit, body weight, breed, pregnancy status, conception date and body condition score. Each cow type produces a different quantity of urinary and faecal excretion which varies with dry matter intake, milk yield and the sodium and potassium status of the pasture. Excretal nitrogen composition is predicted within a separate model which calculates daily nitrogen excretion in faeces, urine and milk. Excretions are deposited randomly over the grazed area and account is taken of overlapping excretions that are created on the same day and overlaps that occur with older excretal patches deposited in previous grazing rounds. Each excretal patch has its own associated pasture, water and soil model reflecting the differences in nitrogen status between patches. Grazing preference is expressed within the model between different classes of excretal patch and between excretal patches and the base pasture and between clover and grass. Supplementary silage is conserved and fed according to the management schedule of LUDF. Cows calve, become pregnant and are dried off within the model according to the relevant records from LUDF. Cows are deemed to arrive on the farm on the day of calving and to leave on the day that drying off is finished (a 5 day procedure within the model), except for those cows that are overwintering which remain on the farm. The soil model has multiple nitrogen/carbon pools and is dynamically linked to all the other models. External nitrogen losses from the system are modelled as volatilisation, leaching and denitrification, with pasture nitrogen uptake from the soil model and fixation by clover from the atmosphere. Both the individual component models and the final assembled composite model were successful in matching the available data in terms of pasture and animal production, pasture composition, soil water balance and nitrogen status and external losses. The model indicates that the low residual, high stocking rate farm returns more excreta to the soil. However, this is countered by a reduction in the amount of dead material returned to the paddock and this reduces the relative size of the pool of nitrogen in the dead organic matter. This produces a relative lack of substrate for the soil microbes which are thus unable to exploit all of the nitrogen in the available pool. Soil ammonium and nitrate pools are also increased from the increase in faecal and urinary return so precipitating an immobilising flux from these larger pools to the smaller pool of nitrogen available to the soil microbes. However, the relative inability of the soil bacteria to fully exploit this means that the production of soil organic live matter and the resulting mineralising flux from the dead organic matter pool through the available pool to the ammonium and nitrate pools is reduced. The larger ammonium and nitrate pools will also be associated with increased external losses from the system as denitrification, leaching and volatilisation are increased. The increase in the clover percentage within the sward in 2003-04 led to greater nitrogen fixation and the model suggests that some of the extra nitrogen is effectively captured by the animals in increased production. However, the reduction in the return of dead matter coupled with an increase in excretal return and the consequent increase in the mineral nitrogen pools within the soil lead to greater losses of nitrogen from the soil.

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Sheldon-Sayer, Lynne. "The vegetation of Maud Island, Marlborough, New Zealand." Lincoln University, 2006. http://hdl.handle.net/10182/1707.

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Maud Island (Te Hoiere - "a long paddle or mighty pull") is a moderately sized island of 309 hectares, located in the Pelorus Sound (41°, 02 'S, 173° 54 'E) Marlborough, at the north-east end of the South Island of New Zealand. It has a long history of human modification and impacts since its colonisation by Maori and early Europeans. The vegetation of Maud Island has been studied in the 1980's and again in the early 1990's. The objectives of this study were to (1) describe how the vascular plant communities vary in species composition across Maud Island, (2) determine which environmental factors are important predictors of the variation in species composition of Maud Island plant communities, and (3) describe the pattern of succession of the plant communities on Maud Island over the last twenty years. In this 2001 study, I comprehensively sampled the vegetation on Maud Island using a Reconnaissance Description Procedure in a total of 158 plots across the island and compared these results to previous descriptions. I also retook photos at permanent photo points to provide a visual comparison of vegetation change. In total, 219 plant species were identified; 177 species occurred within the plots and 42 additional species were observed while walking around the coastline and walking tracks. Six dominant plant species occurred in over 70% of the plots. They were Pteridium esculentum, Pseudopanax arboreus, Hebe stricta var. stricta, Melicytus ramiflorus, Ozothamnus leptophylla and Coprosma robusta. Two-Way Indicator Species Analysis resulted in the description of eight different plant communities on the island. Detrended correspondence analysis showed a high degree of turnover in species composition among these communities. Canonical correspondence analysis showed that slope and moisture were particularly important predictors of variation in plant species composition. The environmental factors that best predicted to variation communities were slope, moisture, and a gradient in historical disturbance. Comparisons of present and past vegetation maps and photos (ground and aerial) showed, in terms of the successional pathways of the vegetation on Maud Island, that over time, the vegetation is reverting from short stature grassland and scrub to predominantly forest scrub and young secondary forest.

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Calder, Keith Wallace. "A LEEP forward : biodiversity futures for New Zealand : a thesis in partial fulfilment of the requirements for the Master of Resource and Environmental Planning at Massey University, Palmerston North, New Zealand." Massey University, 2007. http://hdl.handle.net/10179/741.

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Loss of indigenous biodiversity continues in New Zealand. Despite admirable goals in the NZBS 2000 to the contrary, efforts at improved biodiversity conservation have been insufficient to halt loss of significant amounts of indigenous forest and wildlife habitat. Increasing numbers of native species are moving towards critically endangered and extinction. Whatever we are doing in New Zealand, it is not effective enough. The aim of this study is to firstly identify factors contributing to the failure, “to halt the decline of indigenous biodiversity” in New Zealand and to then consider opportunities to overcome these barriers. In considering opportunities, this study then reviews the emerging discipline of landscape ecology as an answer to, at least, some of those factors and the recurring calls from New Zealand ecologists for a more integrated and holistic approach to biodiversity conservation. Recent advances in the planning framework and particularly provisions for biodiversity conservation in England are explored as a model of practical application of landscape ecological principles to land-use planning. From this review, the study proposes a new ‘LEEP’ model for strategic biodiversity conservation that produces a regional-scale spatial conservation map and accompanying policy and implementation guide. Together they provide an integrated and holistic approach to restoring or creating functional landscapes that also recognises and provides for human activities and development. Application of the LEEP model is demonstrated through a case study of the Wellington region. Benefits and potential uses of the map and policy outputs are canvassed. Interviews with leading New Zealand and international ecologists provide an assessment of the current status of landscape ecology and interviewees also act as an expert ‘test panel’ against which the Wellington maps and guides produced from the ‘LEEP’ model are assessed. Finally, suggestions are provided for development of the new model and future research needs towards fuller and more effective implementation of this approach to biodiversity conservation in the New Zealand context.

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Puig, Virginia Moreno. "Conservation issues for Hochstetter's frog (Leiopelma hochstetteri): monitoring techniques and chytridiomycosis prevalence in the Auckland region, New Zealand : a thesis presented in partial fulfillment of the requirements for the degree of Master of Science in Conservation Biology at Massey University, Auckland, New Zealand." Massey University, 2009. http://hdl.handle.net/10179/1132.

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Amphibians are suffering extinctions and range contractions globally. This is caused by numerous factors and most of them are related to human activities. The overall aim of this thesis was to make a significant contribution to the conservation of the endemic amphibian Leiopelma hochstetteri through research. This was achieved by focusing in two of the main conservation issues for this species, the need for standardised and robust monitoring techniques to detect trends and changes in populations, and the determination of the prevalence of chytridiomycosis, caused by the amphibian chytrid fungus (Batrachochytrium dendrobatidis). Two populations of the Auckland Region were selected for this study, one on the mainland (Waitakere Ranges) and the only known offshore island population of this species (Great Barrier Island). For both study sites different monitoring methods were used to obtain some population parameters. Site occupancy models of MacKenzie et al. (2002) gave reliable site-specific estimations of occupancy and detection probability using covariate information and presence-absence data collected from 50 sites in the Waitakere Ranges and four repeated visits during 2008. Elevation and distance searched were found to have an important effect on occupancy levels, while time taken to search the site was important variable determining detection probabilities. Also, parameters were estimated for three age classes separately. Statistical models were used to infer abundance from occupancy analysis, and results were compared with the distribution of relative abundances obtained from repeated transect counts and an established sight/re-sight criterion. In addition, the use of surrogate measures for relative abundance was explored. Detection probability and the distance to first frog found were found to have a significant correlation with relative abundance. These measures can be used to infer relative abundance in future site occupancy surveys. Two surveys and a pilot site occupancy survey were conducted on Great Barrier Island, and presence of frogs was confirmed atthe northern block, and in a small seepage in the central block. No new locations were found. Waitakere Ranges and Great Barrier Is. populations were tested for the presence of chytridiomycosis, and all frogs sampled tested negative (n = 124) which means that if present chytridiomycosis prevalence is lower than 5% with a 95% confidence interval. This and previous evidence suggests that L. hochstetteri may be resistant or immune to the disease. However, to confirm this additional studies are needed.

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Ford, Colleen D. "The fate of nitrogen in lactose-depleted dairy factory effluent irrigated onto land." Lincoln University, 2008. http://hdl.handle.net/10182/837.

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A two-year lysimeter study was undertaken to compare the environmental effects (e.g. nitrate leaching and nitrous oxide emissions) of soil applied lactose-depleted dairy factory effluent (LD-DFE) with lactose-rich DFE. The aim of this experiment was to determine the fate of nitrogen from LD-DFE and dairy cow urine applied to a Templeton fine sandy loam soil (Udic Ustrochrept), supporting a herbage cover of ryegrass (Lolium perenne) and white clover (Trifolium repens). Measurements were carried out on the amount of nitrogen lost from the soil via leaching, lost by denitrification, removed by the pasture plants, and immobilized within the soil organic fraction. Further, a comparison between the fate of nitrogen in LD-DFE irrigated onto land under a "cut and carry" system, as opposed to a "grazed" pasture system was undertaken. Lactose-depleted dairy factory effluent was applied at three-weekly intervals during the summer months at rates of 25 and 50 mm, until nitrogen loading targets of 300 and 600 kg N ha⁻¹ yr⁻¹ had been achieved. Measured leaching losses of nitrogen averaged 2 and 7 kg N ha⁻¹ yr⁻¹ for Control 25 and Control 50 treatments; 21, 20 and 58 kg N ha⁻¹ yr⁻¹ for 25 and 50 mm "cut and carry" treatments respectively; and 96 kg N ha⁻¹ yr⁻¹ for the 25 mm "grazed" treatment. The range of nitrate-N leaching loss from LD-DFE plus urine is no different from the lactose-rich DFE nitrate leaching loss. Uptake of nitrogen by the growing pasture averaged 153, 184,340,352,483, and 415 kg N ha⁻¹ yr⁻¹ for Control 25, Control 50, LD-DFE 25 and LD-DFE 50 mm "cut and carry" treatments, and the LD-DFE 25 mm "grazed" treatment, respectively. Denitrification losses were 0.06, 4.4, 1.69, 19.70, and 7.4 kg N ha⁻¹ yr⁻¹ for Control 25, the LD-DFE 25 "cut and carry" treatments, the LD-DFE 25 mm "grazed" treatment, and calculated "paddock losses", respectively. Isotopic nitrogen studies found that 29.4 and 25.8% of applied LD-DFE nitrogen was immobilised in the LD-DFE 25 and LD-DFE 50 "cut and carry" treatments. The results of this experiment confirm the findings of the previous lactose-rich DFE study, in that the effects of grazing stock are of greater environmental concern than the removal of lactose from the effluent waste stream.

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Chappell, Esta Monique. "Morphology, phylogeography and drumming behaviour of a New Zealand ground weta, Hemiandrus pallitarsis : a thesis presented in partial fulfillment of the requirements for the degree of Master of Science in Conservation Biology at Massey University, Palmerston North, New Zealand." Massey University, 2008. http://hdl.handle.net/10179/828.

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Species are one of the fundamental components of biology and the accurate delimitation of species is important in evolutionary, systematic and ecological studies, yet there is still confusion over how species can be recognised. Examining different characters allows multiple lines of evidence for successful and accurate species delimitation and identification. In this thesis, morphological, genetic and behavioural variation is investigated within an endemic species of ground weta, Hemiandrus pallitarsis, in the North Island, New Zealand. Twelve morphological characters were measured, and mitochondrial cytochrome oxidase I DNA sequences were analysed from populations across the distributional range of H. pallitarsis. Both methods provide no evidence of a species complex within H. pallitarsis. Instead, the morphometric results suggest females are significantly larger than males, and ground weta in Palmerston North are significantly smaller than weta further north. Additionally, genetic analyses found substantial population structuring, large genetic distances, and an historical south to north pattern of movement in the North Island. The pattern of vibratory drumming behaviour followed that predicted by morphology and geographic proximity – drumming signals were more similar between geographically close populations and did not match the patterns of genetic isolation. Overall, this thesis was able to show that H. pallitarsis is morphologically, genetically and behaviourally variable across the North Island.

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O'Connor, Katrina Marie. "The ecological footprint of international tourists in New Zealand : a thesis presented in partial fulfilment for the degree of Master of Applied Science in Natural Resource Management at Massey University, Palmerston North, New Zealand." Massey University, 2009. http://hdl.handle.net/10179/1124.

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Ecological Footprint Analysis (EFA) is a technique that was first developed by Wackernagel as a Ph.D. thesis in 1994, then further developed in combination with Rees and published (Rees & Wackernagel, 1995). EFA is employed in this study to assess the resource utilisation of international tourists visiting New Zealand. Tourism is one of the fastest growing industries in the world and the ecological sustainability of tourism is becoming more important term for managing tourism. This is becoming increasingly important with tourism identified as particularly as a significant contributor to carbon emissions. This study uses EFA to assess whether international tourists visiting New Zealand behave in a sustainable manner. Tourists are surveyed and classed into high, mid and low budget tourist types to gain a detailed account of their behaviour with particular reference to food, accommodation, transport, services, activities attractions, goods and waste. The EFA helps to identify areas of a tourist’s trip that have the greatest impact on the environment, thereby identifying ways to improve the sustainability of tourism in New Zealand. It was found that tourists generally consume more whilst on holiday than they do at home and more than New Zealand residents. The results show that international tourists’ behaviour is sustainable and New Zealand has the ecological carrying capacity to allow the number of international tourists to increase without incurring any significant ecological costs to the country. It was found that there is a positive relationship between ‘high’ income tourists and their ecological footprint and that independent travellers have a larger ecological footprint than the package travellers; however, package travellers have a larger food and housing ecological footprint than independent travellers. The energy footprint was the largest out of the six land types of a tourist’s ecological footprint. Food is the consumption category that is the largest contributor to a tourist’s ecological footprint.

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Kongara, Kavitha. "Studies on renal safety and preventive analgesic efficacy of tramadol and parecoxib in dogs : thesis in fulfilment of the degree of Doctor of Philosophy in Veterinary Clinical Science, Institute of Veterinary Animal and Biomedical Sciences, College of Sciences, Massey University, Palmerston North, New Zealand." Massey University, 2008. http://hdl.handle.net/10179/864.

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Ovariohysterectomy and castration are common surgical procedures in small animal practice that can result in clinically significant postoperative pain. One way of controlling postoperative pain is administration of a single analgesic or a combination of different classes of analgesics prior to the onset of noxious stimuli. A constraint to the perioperative use of traditional opioids and non-steroidal anti-inflammatory drugs (NSAIDs) is their undesirable side effects. In this series of experiments, the preventive (pre-emptive) analgesic efficacy of two popular human analgesics, tramadol (an ?atypical? opioid) and parecoxib (a NSAID with selective COX-2 inhibition) was evaluated in dogs. Initially, the efficacy and renal safety of parecoxib, tramadol and a combination of parecoxib, tramadol and pindolol (a -adrenoceptor blocker and 5-HT1A/1B antagonist) were screened in anaesthetised healthy dogs. These analgesics increased the dogs? nociceptive threshold to mechanical stimuli, without causing significant alterations in the dogs? glomerular filtration rate (GFR) estimated by plasma iohexol clearance. Subsequently, the efficacy of tramadol was compared with morphine, in dogs undergoing ovariohysterectomy or castration. The Glasgow composite measure pain scale-short form score (CMPS-SF) and changes in intraoperative electroencephalogram (EEG) responses were used to assess the efficacy of analgesics. Of the three treatment groups (preoperative morphine, 0.5 mg kg-1; preoperative tramadol, 3 mg kg-1; a ?combination? of preoperative low-dose morphine, 0.1 mg kg-1, and postoperative tramadol 3 mg kg-1), dogs given the ?combination? had significantly lower pain scores after ovariohysterectomy. In castrated dogs, preoperative tramadol (3 mg kg-1) and morphine (0.5 mg kg-1) were tested and no significant difference in the CMPS-SF score were observed between them. Changes in EEG variables were not specific between the treatment groups in ovariohysterectomised dogs. Finally, the efficacy of test drugs was evaluated against acute noxious electrical stimulation in anaesthetised dogs, using EEG. Median frequency of the EEG, a reliable indicator of nociception, increased significantly in tramadol and parecoxib groups, compared to morphine, after electrical stimulation. These studies demonstrated that tramadol and parecoxib can produce analgesia in dogs with insignificant side effects. The efficacy of tramadol appears to vary with the type of noxious stimulus. A complete prevention of noxious input by administration of analgesics pre- and post-operatively could have important clinical applications.

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Erceg, Vicki Heather. "Detection of behavioural and cognitive dysfunction in mucopolysaccharidosis IIIA affected dogs : a thesis presented in partial fulfilment of the requirements for the degree of Master of Veterinary Science at Massey University, Palmerston North, New Zealand." Massey University, 2009. http://hdl.handle.net/10179/1053.

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This study investigated whether behavioural and cognitive dysfunction caused by mucopolysaccharidosis (MPS) IIIA can be detected early in affected dogs’ lives, and to describe the behaviours of these dogs. No other scientific papers have been published on this topic and the population of dogs examined in this study are the only MPS IIIA affected dog colony available worldwide for study. Three main tests were performed on the population of MPS IIIA affected dogs. Physical behavioural assessment tests were performed at six and eight weeks of age and from twenty weeks of age a cognitive function task was taught and then tested to measure the dogs’ performance. A previously validated questionnaire, the canine behavioural assessment and research questionnaire (C-BARQ), was completed at three, six and twelve months of age. The researchers in these studies were blinded to the MPS IIIA status of the dogs examined. The behaviours shown by the MPS IIIA puppies at six and eight weeks of age were not significantly different from the behaviours of the unaffected puppies. This finding supported the research of other MPS IIIA studies and suggests that clinical behavioural changes do not occur at such a young age. The behaviours shown by the MPS IIIA affected puppies appeared to be normal puppy behaviours similar to those described in previous research on puppies. The C-BARQ measured the behaviours shown by the MPS IIIA affected and unaffected dogs. Most of the MPS IIIA affected dogs’ behaviours were not significantly different from the unaffected dogs’ behaviours, but MPS IIIA affected dogs did retrieve significantly more than unaffected dogs at three months of age, and were less distractible at twelve months of age. It would be worth investigating these findings further to decide whether it suggests a subtle alteration in brain functioning. The cognitive function test showed a significant decrease in the success of the MPS IIIA affected dogs in the final maze test. This is the first study on dogs affected with MPS IIIA to find a decline in cognitive function before the occurrence of cerebellar clinical signs and this new knowledge may lead to future developments measuring therapy response and disease progression. The T-shaped maze testing may be valuable in future research on cognitive function in dogs with other diseases such as epilepsy. Thus this thesis provides valuable information on canine MPS IIIA and provides a foundation for future disease investigations.

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Willems, Nancy. "Forest structure and regeneration dynamics of podocarp/hardwood forest fragments, Banks Peninsula, New Zealand." Lincoln University, 1999. http://hdl.handle.net/10182/1301.

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Although species maintenance in small forest fragments relies on successful regeneration and recruitment, few studies have examined the effects of fragmentation on regeneration processes. New Zealand's podocarp species rely on large disturbance openings operating across a vegetated landscape to stimulate regeneration. Clearance of vegetation that results in small fragments of forest removes regeneration opportunities for podocarps by destroying the intact vegetation mosaic, and as a result may exclude disturbances of the scale necessary for podocarp regeneration. Fragmentation alters the disturbance regime of the landscape, with important implications for the regeneration of podocarps on Banks Peninsula. The four remaining lowland podocarp-hardwood fragments on Banks Peninsula were sampled to determine the structure and regeneration patterns of podocarps and to assess their long term viability. Density, basal area, and size and age class distributions were used to examine current composition, and in conjunction with spatial analysis, to identify past regeneration patterns and infer likely future changes in composition and population structure. Podocarp size and age class structures for three of the four fragments were characteristically even-sized and relatively even-aged (eg; Prumnopitys taxifolia c. 350 to 600 years), with little or no regeneration for approximately the last 200 years (old-growth fragments). Regeneration of the current podocarp canopy in the old-growth fragments may have been stimulated by flooding. The fourth younger fragment showed much more recent regeneration with Prumnopitys taxifolia, Podocarpus totara and Dacrycarpus dacrydioides mostly 80-160 years old, and substantial populations of seedlings and saplings, probably as a result of anthropogenic fire. In the absence of major disturbance the podocarp component in forest fragments on Banks Peninsula is likely to decline with composition shifting towards dominance by hardwood species. There is some evidence to suggest that canopy collapse will stimulate some podocarp regeneration within the fragments, however it appears to be unlikely that podocarps will persist on Banks Peninsula indefinitely within the fragments studied. There is an urgent need for more quantitative research in New Zealand fragmentation literature, and a need for more emphasis on processes. Banks Peninsula offers potential for a more landscape scale approach in forest management, and the maintenance of regenerating scrub in pockets about the Peninsula may offer the regeneration opportunities for podocarps that are lacking within protected fragments. My study took a quantitative approach in examining the effects of forest fragmentation on the demographics of podocarps and compositional change in forest fragments on Banks Peninsula.

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Jimenez-Castro, Claudia. "Management of a marine protected area by a local NGO in Honduras: its implications for local communities." Lincoln University, 2008. http://hdl.handle.net/10182/1237.

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This study explores the factors that influence the management of a protected area situated on private land as well as the implications of these factors in the interaction between the NGO and the communities associated with this area. The protected area, Marine National Monument Cayos Cochinos, is an archipelago surrounded by reefs in the Honduran Caribbean. This area is home to a highly heterogeneous population of fisherfolk communities –most are members of the Garifuna ethnic group– and wealthy Honduran and foreign landowners. This case study also comprises three fisherfolk communities outside the protected area who fish in Cayos Cochinos. Local fishermen in Cayos Cochinos are settled in community-owned areas; however, these settlements started by the occupation of private lands. Wealthy landowners have either individual land titles or shares of a firm owning four of the islands. The protected area was established through the initiative of this firm to protect the natural resources. This area is nominally co-managed by a local nongovernmental organisation (NGO) and two government agencies; however in practice it is managed solely by the NGO. This study discusses the influence of the nature of the Honduran legislation regarding protected areas and of the co-management agreement on the management of Cayos Cochinos. This research also shows that the management priorities of this protected area are only partially based on the Honduran government’s laws and regulations and the guidelines specific for this area. Lack of government participation in the co-management of the area, financial constraints, influences on the NGO of stakeholders in higher positions of power with respect to it, personal preferences of the NGO managers and issues regarding the communities’ leadership, have all had an influence on the management priorities of the protected area since its constitution. The combined effect of these factors has influenced the management of the NGO towards prioritising the natural resource conservation. This area is managed under a ‘people-out’ conservation paradigm. The adoption of this paradigm has disadvantaged the fisherfolk communities inside and outside the protected area by restricting their access to the natural resources on which their livelihoods are highly dependent. However, the same situation has favoured the private landowners by limiting the access of the fisherfolk communities to the land owned by the former. The privileging of one community sector over another has created conflicts between the NGO and the fisherfolk communities. However, these conflicts have been fuelled by other factors such as the steady contesting of the land titles over the territories occupied by the latter, and by the support that external organisations have given to the latter at the expense of the original owners of the land. This research suggests that local NGOs in charge of the management of natural protected areas might have limited capacity to abide by national conservation and sustainable development priorities due to the likelihood to be influenced by external forces with different priorities.

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Donaldson, Laura Patricia Constance. "The distribution of fatty acids and presence of environmental contaminants in the blubber of the New Zealand sea lion (Phocarctos hookeri) : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Conservation Biology at Massey University, Palmerston North, New Zealand." Massey University, 2008. http://hdl.handle.net/10179/887.

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The conservation of marine mammals relies on the knowledge of species ecology in order to assess the impacts of anthropogenic activites and make appropriate species management decisions. Blubber biopsies are a relatively non-invasive sampling protocol to provide ecological information; two particular uses are for dietary analysis via fatty acid signature analysis (FASA) and investigating the uptake of organochlorine (OC) and polychlorinated biphenyl (PCB) environmental contaminants. Blubber composition and structure may vary according to body site and depth due to its dynamic functioning. This may result in the vertical stratification and heterogenous distribution of blubber FAs, OCs and PCBs between body sites, giving variable interpretations of diet and contaminant levels depending on biopsy sample site and depth. The aim of this thesis is to determine the FA distribution of blubber from two body sample sites (dorsal pelvic and ventral thoracic) currently used for FASA of the New Zealand sea lion, Phocarctos hookeri (NZSL) and to determine the level of OCs and PCBs in the blubber of healthy NZSLs for comparison to diseased NZSLs recorded in the 1997/98 epidemic. Blubber samples were collected from 29 by-caught NZSLs incidentally captured by the squid fishery around the Auckland Islands (50º42’S, 166º5’E) during the years 2005 to 2007 (not all NZSLs were able to be analysed for each chapter). Full blubber cores from both sample sites were collected from 18 NZSLs. Both sites showed a relative homogeneity of FA profiles, indicating the similar deposition and mobilisation of FAs at the two sample sites. To determine if FA stratification occurred, full blubber cores from both sample sites of 20 NZSLs were divided into inner and outer halves. Both sites displayed the same pattern of vertical stratification or biochemical layering of FAs between the two divisions, indicating that stratification of FAs occurs in the blubber of the NZSL. A range of OCs and PCBs were then determined in full thoracic blubber cores of seven NZSLs. The levels were higher than those previously recorded in NZSLs affected by disease during a 1997/98 epidemic. The SPCB in NZSLs was 0.034-0.192 mg/kg lipids, below the suggested threshold of 17 mg/kg for adverse health affects in marine mammals. From the results of this study I can support current blubber biopsy sampling techniques for FASA in NZSL. Obtaining full blubber cores from either the thoracic or pelvic sample site will give a comparable interpretation of diet. The low levels of blubber OCs and PCBs suggest a minor role of contaminants acting as a possible causative agent toward disease outbreaks in the NZSL. This research provides important information for developing correct and consistent blubber sampling techniques for NZSL and other pinniped species. This will ensure more accurate interpretations of ecological information obtained from blubber biopsies and therefore improved species management and conservation decisions that may be based on such research.

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Newcombe, Vernon Claude. "Mercury use in the goldmining industry : a retrospective examination of elemental mercury use in the gold mining industry of the West Coast of New Zealand in the period 1984-1988 : a thesis submitted in partial fulfilment of the requirement for the degree of Master of Philosophy (Science) at Massey University, Wellington, New Zealand." Massey University, 2008. http://hdl.handle.net/10179/832.

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Robertson, Louise Mary. "Anthelmintic treatment and digestive organ morphology of captive-reared kaki (Himantopus novaezelandiae) released to the wild : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Conservation Biology at Massey University, Palmerston North, New Zealand." Massey University, 2009. http://hdl.handle.net/10179/1001.

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The continued existence of New Zealand’s critically endangered and endemic black stilt or kakï (Himantopus novaezelandiae) relies on an intensive captive management programme. While this is successful at rearing large numbers of birds for release to the wild, poor survivability of these birds is limiting significant increases in the wild population. Predation and starvation are suspected to be the most common causes of death in released birds, but underlying contributing factors to these mortalities have not been fully evaluated. This research investigates the possible contribution of gastrointestinal (GI) helminth burdens and suboptimal digestive organ development to the high mortality rates of released kakï. Emphasis is placed on evaluating the methods used to assess the importance of these factors and to make informed recommendations for future management. The efficacy of the anthelmintic regime used for kakï was assessed by dosing half of the 80 captive birds with praziquantel (PZQ) prior to release in 2007. Faecal samples were collected before and after anthelmintic treatment, and before and after release to the wild. Post mortem worm counts were conducted on 11 birds that died following release and historical worm count records dating back to 1997 were accessed. The main findings were: PZQ had high efficacy against trematodes; treatment did not prevent re-infection; birds were exposed to helminths at release site; and there was no advantage of treatment for survival. Overall, the results suggest that anthelmintic treatment is an unnecessary cost. Consequently, recommendations were made to cease anthelmintic treatment or reduce its intensity, continue health screening, and incorporate annual efficacy testing to monitor the emergence of anthelmintic resistance. The reliability of faecal screening for GI helminths was evaluated. Faecal egg counts (FECs) were found to be poor indicators of worm burden. The two modified sedimentation methods used to detect trematodes provided relatively low egg recovery rates. Trematode egg shedding varied between days but not by hour of the day or temperature. The collection and analysis of pooled faecal samples proved to be more cost and time-effective than samples from individual birds and the larger masses collected resulted in greater sensitivity. In conclusion, faecal analysis of pooled samples is a useful qualitative indicator of helminth presence or absence but is quantitatively unreliable. In order to assess the importance of digestive organ development to captive-reared and released kak?, the digestive organs of healthy and emaciated captive, released and wild Himantopus sp. were compared. Captive and released kak? had generally smaller digestive organs than wild birds, released birds did not increase digestive organ size to match the high fibre wild diet, and emaciated birds did not have atrophied organs. However, the greatest mortality rates occur soon after release, while the birds were still being supplementary fed. These results suggest that reduced digestive efficiency is probably not contributing significantly to mortality rates and the direct impacts of the translocation are probably greater risk factors. The continued provision of supplementary food to released birds and an increased focus on habitat enhancement and predator control at release sites were recommended. The reliability of comparing fresh and formalin fixed Himantopus sp. gut specimens was evaluated. Significant differences in fresh and formalin fixed organ dry masses and variation in preserved organ lengths indicate that this variation should be considered in future studies. In conclusion, current management practices appear to be successful in ensuring that GI helminths and reduced digestive efficiency do not significantly lower the survivorship of captive-reared and released kakï. There is a need for further research into developing a more direct physiological assessment of the impacts of GI helminths and gut morphology as well as considering the role that starvation may have on poor survivability.

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Mojsilovic, Ognjen. "Estimating bioaccessibility, phytoavailability and phytotoxicity of contaminant arsenic in soils at former sheep dip sites." Lincoln University, 2009. http://hdl.handle.net/10182/1142.

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Recognition that the bioavailability of soil As (As) is influenced by its soil dynamics has initiated research into development of more accurate, site-specific soil guideline values, departing from the assumption that the total soil As content is bioavailable. With the aim of deriving predictive models, the relationship between soil properties and As bioavailability (bioaccessibility and phytotoxicity) was examined on a set of naturally contaminated sheep dip soils (n = 30). Sampled soils were extensively characterised, bioaccessibility was estimated through an in vitro procedure, and soil As toxicity and availability to plants were evaluated using an early growth wheat bioassay. The in vitro bioaccessibility was consistently less than the total soil As content. Arsenic bioaccessibility was negatively correlated to soil iron (Fe), manganese (Mn) and aluminium (Al) contents, and it was positively related to the soil As loading. The in vitro extractable soil As concentrations were successfully modelled using linear combinations of soil As content, soil Fe and Mn determinations and soil pH. Differences in As phytotoxicity, expressed in terms of effective toxic concentration (EC50), between soils were directly related to soil Fe, Mn and Al contents. Available soil phosphorous (P) exerted an ameliorating effect on As toxicity, with the available soil As/P ratio representing the single best predictor of plant growth suppression. Plant P nutrition appeared to influence the relative selectivity for As and P by wheat, with greater selectivity for P demonstrated under P deficient conditions. Plant As uptake, its distribution, and also the plant nutrient status were all adversely affected by increasing soil As exposure. Co-contamination by Zn corresponded to a substantial elevation in proportion of the plant As allocated in shoots. Plant As levels exhibited a saturation-dependent relationship with increasing soil As. The best linear predictors of plant As levels in the non-toxic range were RHIZO-extractable and effective soil As concentrations, the latter based on the diffusive gradients in thin films (DGT) technique. Despite the complexity of soil As dynamics, large proportions in the variances exhibited by the two measures of bioavailability were explained using a small set of readily-available soil properties.

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Whitwell, Sarah Margaret. "The impact of isolation from mammalian predators on the anti-predator behaviours of the North Island robin (Petroica longipes) : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Conservation Biology at Massey University, Auckland, New Zealand." Massey University, 2009. http://hdl.handle.net/10179/1142.

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Conservation in New Zealand has begun to focus heavily on the restoration of degraded mainland ecosystems and the reintroduction of native species that have become locally extinct. In many cases the individuals that are selected for reintroduction are harvested from ‘mammal-free’ offshore islands. This thesis examines the effects of isolation from mammalian predators on the predator avoidance behaviours and predator recognition abilities of New Zealand birds using the North Island robin as a model. It also investigates whether any effects of isolation from mammalian predators has a lasting impact on mainland populations founded by individuals from offshore islands. Nest site selection behaviours were compared across three populations that are exposed to different suites of predators and have differing translocation histories; Benneydale, Tiritiri Matangi and Wenderholm. Point height intercept and point-centred quarter surveys were used to compare habitat availability between the sites and to compare nest sites with the available habitat. Eight nest characteristic variables were also compared across the three sites using a principle component analysis. Benneydale nests were located higher in the trees and were more concealed than nests at the other two sites. Nests on Tiritiri Matangi were supported by large numbers of thin branches and were located toward the periphery of the nest tree. Unfortunately these differences are very difficult to interpret due to a high degree of variation in the habitat types present at the three sites. The anti-predator behaviours initiated in response to a model stoat, model morepork and control were used to test the ability of nesting robins to recognise the threat that each of these treatments might pose to nest success. Behavioural variables were compared between Benneydale, Tiritiri Matangi and Wenderholm using a response intensity scoring system and a principle component analysis. The results indicated that isolation from mammalian predators on Tiritiri Matangi has suppressed the ability of robins on the island to recognise the predatory threat posed by a stoat. They also suggest that the intense mammal control carried out at Wenderholm may have inhibited the ability of local robins to produce strong anti-predator responses when faced with a stoat.

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Hill, Andrew Gordon. "An investigation of Leucocytozoon in the endangered yellow-eyed penguin (Megadyptes antipodes) : a thesis presented in partial fulfilment of the requirements for the degree of Master of Veterinary Science at Massey University, Turitea, Palmerston North, New Zealand." Massey University, 2008. http://hdl.handle.net/10179/1063.

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Yellow-eyed penguins have suffered major population declines and periodic mass mortality without an established cause. On Stewart Island a high incidence of regional chick mortality was associated with infection by a novel Leucocytozoon sp. The prevalence, structure and molecular characteristics of this leucocytozoon sp. were examined in the 2006-07 breeding season. In 2006-07, 100% of chicks (n=32) on the Anglem coast of Stewart Island died prior to fledging. Neonates showed poor growth and died acutely at approximately 10 days old. Clinical signs in older chicks up to 108 days included anaemia, loss of body condition, subcutaneous ecchymotic haemorrhages and sudden death. Infected adults on Stewart Island showed no clinical signs and were in good body condition, suggesting adequate food availability and a potential reservoir source of ongoing infections. A polymerase chain reaction (PCR) survey of blood samples from the South Island, Stewart and Codfish Island found Leucocytozoon infection exclusively on Stewart Island. The prevalence of Leucocytozoon infection in yellow-eyed penguin populations from each island ranged from 0-2.8% (South Island), to 0-21.25% (Codfish Island) and 51.6-97.9% (Stewart Island). The high prevalence on Stewart Island represented the infection of 100% of chicks and 83% of adult yellow-eyed penguins when tested by PCR. Sequencing of Leucocytozoon sp. DNA found similarities between infections in yellow-eyed penguin adults and chicks, but differences to Leucocytozoon sp. DNA obtained from Fiordland crested penguins. These findings support the suggestion of cross infection between adults and chicks, and indicate that endemic infection in yellow-eyed penguins is unrelated to that in Fiordland crested penguins. Examination by histology and electron microscopy showed tissue megaloschizonts and circulating round gametocytes. Megaloschizonts up to 440µm diameter showed an affinity for hepatic and splenic tissue and were observed releasing occasional intact cytomeres. Round gametocytes were observed within leucocytes in visceral sections, but not peripheral blood smears. The morphology of Leucocytozoon sp. in yellow-eyed penguins showed similarities to the pathogenic species L. simondi and L. sakharoffi but not L. tawaki. A successful treatment protocol for leucocytozoonosis has not been established, although treatment in a Fiordland crested penguin was able to suppress parasitaemia. The role of Leucocytozoon in yellow-eyed penguins as a cause of morbidity and mortality remains unclear. Further investigation into direct pathogenicity, and the interaction of concurrent disease and environmental influences is required. The findings of this thesis provide potential management recommendations and highlight areas requiring further investigation.

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Lin, Xiaoxiao. "Evaluation of Kahne rumen sensors in fistulated sheep and cattle under contrasting feeding conditions : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Agriculture at Massey University, Palmerston North, New Zealand." Massey University, 2009. http://hdl.handle.net/10179/1313.

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The Kahne rumen sensor (bolus) is a device developed to measure temperature, pressure and pH in non-fistulated animals. This bolus allows real-time monitoring of the rumen environment, which could help preventing health problems such as rumen acidosis in cows. It is less invasive to use boluses compared to other technologies that measure the ruminal pH (e.g. rumenocentesis). Kahne boluses and transceivers are commercially available in the market. Several studies on the relationships between data recorded by the bolus and actual data recorded by independent devices were conducted. The bolus temperature and pressure were compared with actual temperature and pressure under controlled conditions. The pH drift was studied by comparing the difference between bolus and direct measurement over time. The capture of the data was calculated for each bolus in various experiments to examine the factors affecting the data capture rate of the boluses. Animal to animal variation was studied using boluses in a group of cows fed and managed under uniform conditions. An animal experiment involving fistulated cows eating two different diets was performed using boluses to monitor the changes of ruminal pH. There was no apparent interruption to normal animal behaviour as a result of using boluses. Regression relationships between bolus measurements and actual data for both temperature and pressure were developed and used for calibration of bolus data. The pH drift was a problem, as the regression relation between the pH difference and the time for one bolus from one experiment could not represent this bolus on other experiment. The data capture rate on the hourly basis ranged from 0 to 100%, but was usually between 30 to 70%. The data capture rate was affected by many factors and further studies to identify these factors are needed. A study of animal to animal variation suggests that in a comparison of 2 treatments, a minimum 3 cows per group would be required to detect the standard deviation of 0.11 for a pH difference of 5% of the mean (approximately 0.35 pH units). Seventeen cows per group would be required to detect the standard deviation of 0.33 for the same difference. The boluses effectively monitored the ruminal pH change in cows easting two different diets and the profile of change of pH was successfully analysed. Feeding 7.6 kg baleage twice a day cause pH to decrease at 0.009 pH units per minute during feeding, while offering a similar quantity of grass and hay once a day resulted in a decrease of 0.0009 pH units per minute during feeding. The beginning of pH increase was about 1 hour following feeding and continuous during resting and rumination. The level of pH increase did not differ significantly for two diets.. The Kahne devices appear to have advantages compared to other technologies for the measurement of parameters of the rumen environment on a real-time basis. Boluses are especially good at intensively monitoring the temperature, pressure, and pH in the rumen. The major limitations of this technology to be used are the data capture rate and the pH drift. By improving the limitations found in the experiment, the Kahne rumen sensor could become very useful for both scientific research and under commercial conditions for monitoring animal health.

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Chakraborty, Manas. "Spatial pattern in macroinvertebrate communities in headwater streams of New Zealand and a multivariate river classification system : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Ecology at Massey University, Palmerston North, New Zealand." Massey University, 2008. http://hdl.handle.net/10179/1067.

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Macroinvertebrate data collected from 120 headwater streams in New Zealand were used to test the ability of the Freshwater Environments of New Zealand River Classification (FWENZ) to explain spatial variation in unimpacted stream invertebrate communities. FWENZ is a GIS based multivariate river environment classification of the sections of national river network. The classification performance of the FWENZ was examined to determine the optimum classification level which could be used for the purpose of conservation and biomonitoring of New Zealand rivers and streams. The classification performance of the FWENZ was also compared to those of two other river classification systems, the ecoregions and the River Environment Classification (REC). Results of the analysis of similarity (ANOSIM) test showed that discrimination of the study sites based on interclass differences in macroinvertebrate community composition was optimal at FWENZ 100 class level which classifies the New Zealand rivers and streams into 100 different groups. The FWENZ 100 class level distinguished the biological variation of the study sites at a finer spatial scale than the REC Geology level. Although performance of the ecoregions classification was stronger than both the river environmental classifications, the REC and the FWENZ, but it was unable to explain the variation in local assemblage structures. Multivariate analyses of the macroinvertebrate abundance data and the associated environmental variables at three different spatial scales (upstream catchment, segment, and reach) were used to identify environmental predictors of assemblage patterns. Catchmentscale measures of climatic, topographic and landcover factors were more strongly correlated with macroinvertebrate community structures than segment scale measures, whereas reachscale measures of instream physicochemical factors and riparian characteristics had the least association with assemblage patterns. Despite the strong influences of cathment-scale factors on macroinvertebrate communities, local factors like water temperature, stream velocity, reach elevation, percent canopy cover and percent moss cover were also involved in explaining the within-region variation in assemblage patterns, which indicates the importance of considering regional as well as local factors as surrogates of stream invertebrate communities to provide a base for stream bioassessment programmes at multiple scales.

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Dobson-Hill, Brenna Catherine. "Uterine involution in the dairy cow : comparative study between organic and conventional dairy cows : a thesis presented in partial fulfilment of the requirements for degree of Masters of Science in Animal Science, Massey University, Palmerston North." Massey University, 2009. http://hdl.handle.net/10179/1272.

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Organic dairying is growing in popularity in New Zealand and the demand for knowledge is ever increasing. Many more farmers are considering organics as an alternative to their current conventional system. However, limited information is available on organic dairying in a New Zealand pastoral situation particularly in relation to its effect on fertility. The New Zealand dairy industry requires the dairy cow to become pregnant every year at the same time to maximise milk production and utilise the high pasture production in spring. A cow requires 40 to 60 days for uterine involution to occur and for resumption of oestrous cycles. It is critical that the cow becomes pregnant within the six to eight week mating period, however, this can be difficult for late calvers or those cows that had or still have a uterine infection, to undergo uterine involution and be successfully mated. These cows will often not become pregnant and as a consequence be culled for infertility. During the first few weeks postpartum, the bacterial composition of the uterus fluctuates as a result of spontaneous contamination, elimination and recontamination. Most cows are able to eliminate these bacteria, however, 10 to 17% of cows are unable to do this. In these cows, the bacteria persist, cause infection and inflammation, and delay uterine involution. The main objective of this present study was to investigate the effect of different management systems (Organic and Conventional) on productivity and reproduction, particularly the process of uterine involution and its relationship with reproductive outcomes. Uterine involution will be studied through the following measurements: cervical diameter as assessed by measurement per rectum, plasma concentrations of glucocorticoids and bacteriology of the uterus. Lactation characteristics: milk yield, cumulative milk yield, milksolids production and somatic cell count will also be investigated. From the results, it can be concluded that Organic cows have reduced milk yield (P=0.05) and milksolids production (P<0.01) through there were no major differences at peak lactation or in the rate of decline after. However, overall somatic cell count was not affected by management system though the Conventional cows had high somatic cell counts in early lactation (P=0.925). Cervical diameter was affected by the management system with the difference between Organic and Conventional cows almost significant (P=0.06). Cortisol concentrations were significantly higher in Organic cows (0.68 ± 0.08 ng/ml) when compared to Conventional cows (0.95 ± 0.06 ng/ml) (P=0.01). Cortisol concentrations decreased over time postpartum (P<0.01). Additionally Organic cows had a shorter interval from calving to AI (P=0.017). However, none of the other reproductive outcomes were affected by management system. Simple correlations established that reproductive outcomes and bacterial counts, reproductive outcomes and cortisol at Day seven, and cortisol and milk production characteristics, were not independent of each other. Aerobic bacterial counts on Day 28 and the interval from calving to AI were found to be significantly correlated (r= 0.615). Stepwise partial regression analysis, plus analysis of variance calculated on the relationships between uterine involution parameters and reproductive outcomes found multiple weak correlations. It found that cervical diameter, and aerobic and anaerobic bacterial counts on Day 28 were significantly correlated with the interval from calving to first AI (P=0.018). The differences in lactation characteristics are related to the lower pasture production on the organic farmlet reducing the maximal potential milk production and the possibly earlier calving dates of the Conventional cows. The differences in bacterial counts and almost significant difference in cervical diameter may be related to the lower cortisol levels and thus suggest that the Organic cows may be less stressed. As stress suppresses the immune system, it may be possible that the higher bacterial counts are indicitative of a less efficient or slightly weakened immune system which takes longer to eliminate bacteria in the uterus; however this is open to conjecture. The shorter interval from calving to AI suggests that Organic cows may be exhibiting oestrus behaviour earlier postpartum or the Conventional cows are having “silent heats” but this difference is possibly related to human factors. The correlation between parameters of uterine involution and interval from calving to AI, and the lower values for uterine involution parameters in Organic cows suggest the possibility of faster uterine involution and this may result in better fertility in the Organic cows. More research needs to be carried out to further investigate the effect of organic dairying on uterine involution and reproduction outcomes but organic dairying at the very least does not negatively impact on uterine involution and fertility.

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Fisher, P. M. "Residual concentrations and persistence of the anticoagulant rodenticides brodifacoum and diphacinone in fauna." Lincoln University, 2009. http://hdl.handle.net/10182/930.

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Brodifacoum is a highly effective anticoagulant rodenticide that presents a secondary hazard to some non-target wildlife. The high acute toxicity of brodifacoum to mammals and birds, and its prolonged persistence in liver predicates secondary risk to predators and scavengers of poisoned rodents. Hence there is a need to improve ability to monitor and predict hazards of brodifacoum to non-targets, and optimise use patterns accordingly. Use of a less persistent anticoagulant rodenticide, diphacinone, is an alternative approach currently under investigation in New Zealand. This thesis describes a series of laboratory and pen studies that address information gaps relevant to the assessment of non-target hazards in continued use of brodifacoum, and of using diphacinone as an alternative. Non-lethal techniques for determining sublethal brodifacoum exposure in birds was investigated in chickens. Elevation of prothrombin time was a less reliable index than residual concentrations in tissues. Samples requiring less invasive procedures, such as dried blood spots or faeces, have potential to detect recent sublethal brodifacoum exposure and refinement of these indices could be useful in proactive monitoring of avian wildlife. Residual brodifacoum in eggs of sublethally-exposed hens raised further questions regarding wider non-target hazard and adverse effects on development of fertile eggs or chicks. A laboratory trial with rats found a positive correlation between residual brodifacoum concentrations in liver and the amount of brodifacoum ingested as bait. An estimated 14-22% of ingested brodifacoum was excreted in rat faeces in the period between ingestion of a lethal dose and death, indicating another potentially significant environmental pathway for brodifacoum transfer. In considering diphacinone as a less persistent alternative rodenticide to brodifacoum, evaluation of residual concentrations and persistence in pig tissues was required to estimate secondary hazard to human consumers and adequate with-holding periods for hunting feral pigs in areas where diphacinone was applied. A pen trial showed that domestic pigs were more susceptible to diphacinone toxicity, and thus primary poisoning risk, than previously estimated. Hepatic half-life of diphacinone in pigs was approximately 14 days, indicating reduced persistence in comparison to brodifacoum and enabling estimates of with-holding periods for hunting feral pigs from areas where diphacinone baits were applied. To investigate potential hazards of diphacinone use to invertebrates a trial using tree weta, a native New Zealand invertebrate, was undertaken. Weta readily ate diphacinone wax block baits with no mortality or weight loss evident, indicating low susceptibility. Residual whole-body diphacinone concentrations did not increase with the amount of diphacinone bait eaten. A simple, deterministic risk assessment suggested that, as a single secondary exposure, the maximum diphacinone concentration measured in weta would present a low risk to non-target birds. Given international recognition of the high secondary hazard and corresponding restrictions on use of brodifacoum, continued availability of brodifacoum to non-licensed users and sustained field applications for possum and rodent control in New Zealand is an exceptional use pattern. New data in this thesis suggest that baiting strategies that minimise the amount of brodifacoum available in the environment are important and regulatory review of some New Zealand brodifacoum applications should address this. In parallel, development of diphacinone as an alternative to brodifacoum should continue, as new data here confirms lower persistence in mammalian liver than brodifacoum, and also indicates low toxicity to invertebrates. However further investigation of multiple-exposure hazard and potential sublethal effects of diphacinone on non-target mammals and birds is warranted before extensive and sustained field applications of diphacinone are undertaken.

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Williamson, Michelle Leigh. "Differential responses of tillers to floral induction in perennial ryegrass (Lolium perenne L.) : implications for perenniality : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Plant Biology at Massey University, Palmerston North, New Zealand." Massey University, 2008. http://hdl.handle.net/10179/842.

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Development of sustainable practices is an important goal in agriculture. One possibility involves the development of perennial cereal crops, but the mechanisms of perenniality first need to be understood. While in annual cereals flowering structures die following seed production, in perennial grasses, perenniality is achieved by maintaining at least one shoot in a vegetative state. There are two views on perennating tiller origin in perennial grasses: some authors suggest that all over-wintering tillers flower in spring and summer, leaving spring-initiated tillers to perennate, while others indicate that spring-initiated tillers are too immature to survive summer conditions, thereby implying that flowering must be prevented in some over-wintering tillers. An understanding of perenniality will therefore require an understanding of flowering control in these species. Temperate perennial grasses have dual induction requirements for flowering, where plants become competent to perceive inductive signals following vernalisation, and flowering is initiated by inductive photoperiods. Two hypotheses were formulated to test these models. The ‘environmental control hypothesis’ stated that all adequately vernalised perennial ryegrass tillers would flower on sufficient exposure to inductive photoperiods. Alternatively, the ‘spatial control hypothesis’ stated that in addition to the environmental mechanisms, a spatial control mechanism acts to regulate flowering. Two experiments were conducted to test these hypotheses. Perennial ryegrass and Italian (annual) ryegrass were induced to flower and differences between the annual and perennial habits at flowering time were observed. However neither hypothesis was proven. In the second experiment, flowering was studied in detail in individual tillers of perennial ryegrass. The eldest tiller flowered in all flowering plants. The second eldest tiller did not flower in 72% of plants with more than one reproductive tiller, while the third eldest tiller flowered in 94% of these plants. These data favour the spatial control hypothesis which suggests that a spatial regulatory mechanism might act to repress flowering in some competent perennial ryegrass tillers. These results were supported by studies of meristem morphology and by a preliminary gene expression study. Maintenance of older, established tillers in a vegetative state might allow the perennial plant a greater chance of survival during summer.

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Linden, Danitsja Stephanie van der. "Ewe size and nutrition during pregnancy : effects on metabolic and productive performance of the offspring : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Animal Science at Massey University, Turitea, Palmerston North, New Zealand." Massey University, 2010. http://hdl.handle.net/10179/1343.

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Exposure of the fetus to adverse conditions in utero may result in developmental adaptations that alter metabolism and postnatal growth of the offspring. This thesis investigated the effects of dam size and nutrition during pregnancy on growth, metabolic function and lactational and productive performance of the female offspring to two years of age. Four-hundred and fifty heavy (60.8 kg ± 0.18) and 450 light (42.5 kg ± 0.17) dams were randomly allocated to ad libitum or maintenance nutritional regimens from days 21 - 140 of pregnancy, under pastoral grazing conditions. From one week prior to lambing, all dams were fed ad libitum until weaning. After weaning, female progeny were managed and fed under pastoral conditions as one group. Maternal nutrition during pregnancy affected lamb growth to weaning, however, after weaning lamb growth was affected by dam size. Dam size had no effect on glucose metabolism, adrenal function or fat metabolism in 16-month-old female twin offspring. Dam nutrition during pregnancy had a minor effect on glucose metabolism and no effect on adrenal function or lipolysis, however, it did possibly affect gluconeogenesis and/or glycogenolysis, with increased glucose production in ewes born to maintenance-fed dams. Ewes born to dams fed maintenance showed greater milk production, lactose percentage, lactose and crude protein yield. Ewes born to heavy dams showed greater milk production and lactose yield. Dam size had no effect on reproductive performance of the female offspring. Being born to a larger dam showed no advantages over being born to smaller dams, for number of lambs born and weight of lambs at birth and weaning. ‘Grand’dam maintenance nutrition increased lamb birth and weaning weight and lamb growth rates of the ‘grand’offspring. Ewes born to maintenance-fed dams could have an advantage over ewes born to ad libitum-fed dams in physiological stressful situations in life as their liver may be able to supply more glucose to support their growing conceptus and milk production to increase the chances of survival of their offspring. These results indicate that it is possible to programme the offspring by feeding their dams differently during pregnancy under grazing conditions. With a better understanding of how offspring can be programmed through different maternal nutritional regimens, it may be possible to significantly increase the production potential of the New Zealand ewe population.

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Alexander, Jane. "Ecology of long-tailed bats Chalinolobus tuberculatus (Forster, 1844) in the Waitakere Ranges: implications for monitoring." Lincoln University, 2001. http://hdl.handle.net/10182/1682.

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The long-tailed bat (Chalinolobus tuberculatus) is a threatened species endemic to New Zealand. Historical anecdotes indicate that long-tailed bat populations have declined. However, it is unknown if all populations have declined and if declines are historical or ongoing. Thus, the development and implementation of a national network of long-tailed bat monitoring sites is a priority of the Department of Conservation's Bat Recovery Plan. Potentially, information gained from a national monitoring programme would assist conservation managers to target resources towards those areas where bat populations are declining and provide baseline information to assist managers to gauge the impact of management techniques on bat populations. Of critical importance is that unless it can be demonstrated that long-tailed bat populations have declined and that, that decline is real, management will not be initiated. The aim of this research was to investigate aspects of the ecology of long-tailed bats that would influence the development of a monitoring programme. The distribution, roost selection, habitat use, and activity patterns of a long-tailed bat population that persisted in the Waitakere Ranges, Auckland, were investigated. A study of the Waitakere Ranges long-tailed bat population was significant because (1) the Waitakere Ranges is the northern most location at which long-tailed bats have been researched; (2) the study was the first to be conducted on a long-tailed bat population that persisted in kauri Agathis australis dominated forest remnants; (3) the long-tailed bat population in the Waitakere Ranges is the only known extant population in close proximity to a major urban area; and (4) the factors that are attributed to long-tailed bat population declines (i.e., forest clearance, predation and urbanisation; O'Donnell, 2000) are likely to be ongoing and intensified in the Waitakere Ranges. Twenty roosts were located. Most roosts (85%) were in kauri, 2 were in mature rimu (Dacrydium cupressinum) and 1 was in a kahikatea (Dacrycarpus dacrydioides). All roosts were in large, live, emergent trees. Mean height of roost trees was 38.4 ± 1.3 m and average DBH was 186 ± 12 cm. The entrances of six roost cavities were identified all were located in minor lateral branches in the crown of the tree and were primarily near the tip of branches. Roosts were a mean height of 24.6 ± 3.7 m above ground level. It was argued that roosts in the crowns of kauri were inaccessible to terrestrial mammalian predators. Twenty-eight roost watches were conducted. The average number of bats counted leaving roosts was 10.0 ± 1.5 (maximum = 24). Roosts were occupied by radio-tagged bats for an average of 2.0 ± 0.4 days, and 11 (55 %) were occupied for only one day. Roost size was the lowest reported for long-tailed bats. Roost switching also appeared higher than in other populations that have been studied. It was argued that morepork predation may have a significant impact on the population viability of the population. As in other studies long-tailed bats were found to forage over modified habitats including over farmland, dwellings, orchards and along streams and roads with little vehicular traffic. Long-tailed bats foraged throughout the Waitakere Ranges and their foothills. Bat activity was highly variable. Of the environmental variables analysed, temperature was found to have the greatest influence on bat activity. There were seasonal and habitat influences on bat activity. The relationship between sample sizes, variation in bat detection rates and desired statistical power using automatic bat detectors to monitor populations of bats was explored. A power analysis on activity data collected with automatic bat detectors indicated that declines in bat populations would need to be reflected in declines of greater than fifty percent in bat activity before monitoring programmes would have sufficient power to detect declines in activity. It was recommended that monitoring programmes should concentrate on intensive presence – absence surveys rather than long-term studies at a few sites.

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26

Morgan, David R. "Maximising the effectiveness of aerial 1080 control of possums (Trichosurus vulpecula)." Lincoln University, 2004. http://hdl.handle.net/10182/20.

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Aerial control using 1080 (sodium monofluoroacetate) baits is widely used in New Zealand for the control of introduced brushtail possums (Trichosurus vulpecula), with the aim of protecting national conservation and agricultural values from these damaging pests. This thesis integrates research, completed over 25 years, that was motivated by growing recognition in the 1970s of the extent of possum impacts and the need to improve the effectiveness and efficiency of the control operation. Field research assessed the palatability of three types of cereal-based pellet baits and carrot baits in different regions, habitat types and seasons. Palatability was assessed by the consumption of the different bait types presented independently of each other on 15-30 plots, with rotation of bait types at plots on successive nights to provide equal exposure to each bait type. There was regional variation in possums' bait preferences, possibly reflecting genotypic differences, whereas seasonal variation was less evident. Carrot bait was preferred or equally preferred to cereal bait in 14 out of 20 field trials. The proportion of possums eating baits was then investigated by, firstly, developing a technique for tracing bait acceptance using rhodamine B, a UV-fluorescent dye. In four field trials, more than 95% of possums accepted three types of dye-marked bait, eliminating bait refusal as a major reason for low kills in winter control operations. In a fifth trial, conducted in summer, only 68% of possums accepted bait suggesting that seasonal availability of favoured foods may influence bait acceptance. Since possums must encounter baits before deciding whether to eat them, field studies were undertaken to assess the coverage achieved in normal aerial baiting operations. Large gaps, up to 400 m in width, were often found between baiting swaths; these could allow some possums to survive. A controlled field experiment, using acceptance of rhodamine-dyed bait as a measure of effectiveness, showed that bait distribution was least accurate where flight paths were not marked. Where gaps of 100 m between flight paths were deliberately created, bait acceptance was slower and less than where coverage was complete. Sowing baits at 3 kg/ha was as effective as at 10 kg/ha, indicating the potential for substantially reducing operational costs by using machinery capable of faultlessly distributing baits at low rates. Navigational guidance systems were evaluated and found to improve the accuracy of bait distribution. During 1993-1997, when a lower sowing rate of 5 kg/ha was adopted operationally by regional managers, control effectiveness was unchanged but annual savings of around $9 million accrued. Because of the lack of suitable sowing machinery, a bucket was developed to permit faultless distribution of baits at lower rates, demonstrating the possibility of yet further cost-savings. The possibility of seasonal food availability affecting bait acceptance was investigated in three different forest habitats. Dyed baits were aerially distributed on 100 ha at each site in each season over two years. In each trial, fat-based condition indices of possums were calculated and the abundance of possum-preferred plant foods described. Bait acceptance was consistently high (85-100%) in the 24 trials, and was not influenced by either condition or availability of preferred foods. It seems likely that seasonal variation in operational effectiveness is caused by either the availability of sharply seasonal, scarce foods that possums may feed on intensively for brief periods, or by warmer temperatures that render 1080 less effective. The influence of 1080 on acceptance of (rhodamine-dyed) baits was investigated in a field trial. Examination of possums for dye-marking showed that 25% of possums refused to eat either a lethal quantity of bait or any bait at all, compared with 98% of possums eating non-toxic bait. This indicated that 1080 is aversive to possums, which is a potential major reason for their surviving control operations. Pen trials were therefore conducted to further examine the problem and to seek solutions. Toxic carrot baits were rejected by 27.5% of possums, equally by smell and taste aversion, whereas toxic cereal pellets were rejected by 34%, mainly by taste aversion. Orange and cinnamon were shown to be among the most preferred of 42 flavours tested and, when applied to toxic baits, 1080 was effectively masked. Bait refusal was reduced to ≤7%, the same as that recorded for possums presented with flavoured non-toxic baits. For long-term control of possum populations, aerial 1080 baiting can be used sequentially with other poisoning methods. However, the compatibility of these methods is dependent on the likelihood of possums developing bait shyness if sublethally dosed. Studies were therefore conducted to characterise and compare the four main toxicants used (1080, cyanide, cholecalciferol and brodifacoum) for induction and mitigation of bait shyness. Shyness was induced in approximately 80% of possums sublethally dosed with cyanide, 60% with 1080, 20% with cholecalciferol, and 0% with brodifacoum. Cyanide and 1080 shyness were found to persist in many possums for at least 12 and 24 months, respectively. Use of alternative bait types, and of baits containing an alternative slow-acting toxin (brodifacoum) were shown to be effective ways of overcoming shyness. This, and other related research, is reviewed to provide operational specifications that maximise the likelihood that all targeted possums will (i) encounter bait, (ii) eat it, and (iii) die. The likely future use of aerial 1080 baiting is described and the technological, economic, environmental and social constraints on its sustainability are discussed. Finally, the uptake of the research by possum managers is considered, and areas identified in the thesis where information is incomplete are summarised as prioritised topics for further research.

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27

Hedley, Carolyn B. "The development of proximal sensing methods for soil mapping and monitoring, and their application to precision irrigation : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Soil Science at Massey University, Palmerston North, New Zealand." Massey University, 2009. http://hdl.handle.net/10179/1217.

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The potential of proximal soil sensing methods for high resolution investigation of soils in the landscape has been investigated. This addresses the need for improved environmental monitoring and management of soils within their environs. On-the-go electromagnetic (EM) mapping has been used to map soils, providing a high resolution (< 10m) spatially defined soil apparent electrical conductivity (ECa) datalayer. Vis-NIR field spectroscopy has been trialled for in situ analysis of soil carbon, nitrogen and moisture. The portable spectroradiometer has been used at 6 sites in the Taupo-Rotorua region for rapid, field analysis of soil carbon (R2 calibration = 0.95, R2 prediction = 0.75,) soil nitrogen (R2 calibration = 0.95, R2 prediction = 0.86) and moisture (R2 calibration = 0.96, R2 prediction = 0.70) by collecting reflectance spectra from the flat surface of a soil core; and at one Manawatu site for soil moisture (R2 calibration = 0.79, R2 prediction = 0.71), where the reflectance spectra were collected directly from a freshly cut in situ soil surface. EM mapping and Vis-NIR field spectroscopy were used in combination to spatially characterize soil moisture patterns at the Manawatu site. Soil available water-holding capacity (AWC) of ECa-defined zones has been assessed at six irrigated production farming sites. Two methods (predicted AWC v ECa; estimated AWC v ECa) have been used to relate soil ECa to soil AWC to predict spatial AWC (R2 = 0.8 at 5 sites). Site-specific soil water balance models have been developed at all sites; and a wireless real-time soil moisture monitoring network has been trialled at two sites, to be used with the ECa-AWC prediction model for the development of daily soil water status maps, for variable rate irrigation (VRI) scheduling. This digital, spatially defined soil water status information is available for upload to a sprinkler system modified for variable rate application. The calculated water savings with VRI were 926% with equivalent energy savings and improved irrigation water use efficiency. Drainage and runoff were reduced by 055% during the period of irrigation, with the accompanying reduced risk of nitrogen leaching. The reduction in virtual water content of product has also been assessed for VRI and compared with uniform rate irrigation (URI) at three study sites. This study suggests that these proximal sensing methods provide a new improved way of monitoring and mapping soils. This facilitates soil inventory mapping, for example soil moisture and carbon mapping. In addition, these high resolution environmental monitoring and mapping techniques provide the information required for optimizing site-specific management of natural resources at the farm scale. On-the-go electromagnetic (EM) mapping has enabled a step change in the pedological investigation of New Zealand soils. Resulting soil ECa maps provide a tool for improving traditional soil map boundaries because they delineate soil zones primarily on a basis of soil texture and moisture in non-saline soils. In this study the maps have been used for site-specific irrigation management at the farm-scale, aiming to increase the energy efficiency of this land management operation. The study has developed a method for improved use of freshwaters by more accurate irrigation scheduling, based on high resolution characterization of spatial and temporal soil differences.

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28

Evans, Alison. "The impact of selective beech (Nothofagus spp.) harvest on litter-dwelling invertebrates and the process of litter decomposition." Lincoln University, 1999. http://hdl.handle.net/10182/1717.

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Minimising the potential impact of forest management requires an understanding of the key elements that maintain forest diversity and its role in ecological processes. Invertebrates are the most diverse of all biota and play important roles in maintaining forest processes. However, little is known about invertebrates in New Zealand's beech forests or the degree to which selective beech harvest might impact on their diversity and ability to carry out ecosystem processes. Studying ecosystem responses to disturbance is considered vital for understanding how ecosystems are maintained. One of the main objectives of this research was to assess whether litter-dwelling invertebrates were susceptible to the impacts of selective harvest and, if so, whether they could be used as indicators of forest health. Changes in invertebrate diversity could have important implications for nutrient cycling and primary production in forests. Litter-dwelling invertebrates contribute to the process of decomposition by increasing the surface area of the leaves, mixing soil organic matter and by infecting leaf particles with soil microbes. This investigation into the function of invertebrates in beech forest was carried out in the context of ecological theories which relate diversity to ecosystem stability and resilience. A replicated study was established in Maruia State Forest (South Island, New Zealand) to assess the potential biotic and abiotic impacts of sustainable beech harvest. Litter-dwelling invertebrates and environmental factors were monitored during 1997, before harvest, to determine how much variability there was between study sites. Specifically, litter pH, light intensity, litter fall, litter temperature, moisture as well as invertebrate abundance and diversity were compared before and after selective harvest. On 17 January 1998, two to three trees were selectively harvested from three of the nine study sites. On 15 February 1998 a similar number of trees were winched over or felled manually to create artificial windthrow sites. The remaining three undisturbed sites were used as controls. Invertebrates belonging to the detritivore guild were assessed from litter samples and a series of litter-bags containing pre-weighed leaf litter which were placed in each of the sites to assess rates of litter decomposition. Millipedes (Diplopoda: Polyzoniidae, Schedotrigonidae, Dalodesmidae, Habrodesmidae, Sphaerotheridae), earthworms (Oligochaeta: Annelida), tipulid larvae (Diptera: Tipulidae), weevils (Coleoptera: Curculionidae), moth larvae (Lepidoptera: Oecophoridae, Tortricidae and Psychidae), slaters (Isopoda: Styloniscidae), Oribatid mites (Acarina: Cryptostigmata) and landhoppers (Crustacea: Amphipoda) were extracted from the litter-bags and their abundance and diversity was compared between the three treatments. Weight loss from the litter-bags and the carbon and nitrogen content of litter were used to measure the rate of decomposition in each treatment. An additional study investigated whether exclusion of invertebrates from leaf litter resulted in reduced rates of decomposition. The results indicated that there was an increase in light intensity and a small increase in temperature following selective harvest and artificial windthrow. There was no significant difference in litter moisture or the amount of litter fall between the treatments. Invertebrate abundances were significantly affected by season but did not appear to be affected by selective harvest or artificial windthrow. The diversity of invertebrates remained relatively constant throughout the year, as did the rate of decomposition. When invertebrates were excluded from the leaf litter there was no consequential effect on the rate of litter decomposition. This suggests that there may be compensatory mechanisms taking place between the trophic levels of the food web to maintain processes and that direct links between invertebrates and decomposition are relatively weak. In conclusion, it appears that the effects of selective beech harvest on forest-floor processes were minimal and are comparable to those created by natural windthrow disturbance. It also appears that macroclimatic effects such as seasonal climatic effects have a large effect on forest biota. As none of the invertebrates studied appeared to be detrimentally affected by selective harvest and as there was no direct link demonstrated with decomposition, it was considered inappropriate to advocate the use of this group of invertebrates as indicators of sustainable forest management. The results from this study provide information which may help inform decisions on the future management of diversity in beech forest ecosystems.

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29

Robertson, M. S. T. "Riparian management guides : are they meeting the needs of the interested public?" Diss., Lincoln University, 2008. http://hdl.handle.net/10182/601.

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In New Zealand, there are many published guidelines about the management of riparian areas. The question needs to be asked, are these guides useful? This research thesis investigates the extent to which riparian management guides meet the needs of the users. This research also considers the importance of riparian management (with regards to the appropriateness of educational guides) in assisting practitioners and the interested public in the management of riparian areas. The main way of investigating this topic was with the help of discussion groups. Discussion groups were held with interested organisations. These groups fell into three categories; Urban groups, Rural groups and Interest groups. The groups were asked to define what would make a guide most useful and desirable to them under three major categories: 1) what the guide looked like, 2) what information was contained, and 3) how was the information accessed. An opportunity was also provided for any further comments. This information was used to create a list of the most popular criteria that existing guides and further publications could be examined against. Eleven criteria were identified as follows: Information should be available online; Have pictures; Include diagrams; Is simple and easy to understand; Contains how to and appropriate methods; Has a plant list; Considers maintenance issues; Identifies where to locate further information; How to contact experts; Is available in libraries; Is in booklet form. The availability of existing information was investigated and its suitability assessed against the criteria. A list of all regional, territorial and unitary councils as well as 'other organisations' that were regarded as sources of environmental knowledge were investigated to see how many had produced information on riparian and wetland management issues. In terms of sources of information, 'other organisations' produce the greatest rate of riparian management information, followed by regional/unitary authorities. Two guides from Canterbury best meet the criteria identified by the interested parties, for the Canterbury region. Each scored 10/11 and failed on different criteria. This led to the conclusion that riparian management guides in Canterbury, while obviously still having room for improvement, are very close to meeting what interested parties feel is most important. Finally, a prototype (model) based on the research is provided for anyone who might be considering preparing a riparian management guide.

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30

Yeeting, Agnes David. "An economic analysis of the domestication of the tuna fishery - the case of Kiribati." Lincoln University, 2009. http://hdl.handle.net/10182/1493.

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The Western and Central Pacific Ocean (WCPO) is home to the largest tuna fishery stock in the world. However, Pacific Island members of the Western and Central Pacific Tuna Commission (WCPTC) argue that their share of the economic rent from the tuna catches taken out of the Pacific region is very small, being on average only about 6% of the total net benefit, when compared to the share earned by Distant Water Fishing Nations (DWFNs). Kiribati is one of the Pacific Island Countries (PICs), which relies heavily on its fishery for its economic development and sustainability. Kiribati earns 40% - 50 % of its government revenue from fisheries access fees paid by DWFNs for tuna caught in the the Kiribati EEZ. The Government of Kiribati (GoK) believes that Kiribati could get greater benefit if they develop their own domestic tuna fishery. This study uses Cost-Benefit Analysis (CBA) and SWOT Analysis to investigate whether domestication of the tuna fishery is the right move for Kiribati or not. The CBA reported in this thesis adapted a model developed by Campbell (2004) to investigate and evaluate fisheries policy in Papua New Guinea (PNG). However the model in this thesis is reflective of the situation and case of Kiribati. In analyzing the different options identified in this study, the CBA indicated negative (-) NPV(s) for the medium-sized vessel option and positive (+) NPV(s) for the large-sized vessel option. The SWOT analysis however, complemented the CBA by further investigating the tuna domestication options in the economic, social and business and business environment of Kiribati. The SWOT analysis indicated that the existing situation and business conditions in Kiribati appears to favor the small to medium sized vessel options which are less risky than the large purse seine vessel option.

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Childerhouse, Emma. "The effect of a natural plant extract and synthetic plant growth regulators on growth, quality and endogenous hormones of Actinidia chinensis and Actinidia deliciosa fruit : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Horticultural Science at Massey University, New Zealand." Massey University, 2009. http://hdl.handle.net/10179/1052.

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Kiwifruit are of huge economic importance for New Zealand representing 29 percent of total horticultural exports. Fruit size is the biggest determinant of what consumers are willing to pay, and there is also a positive relationship between consumer preference for flavour and percentage dry matter. The two main cultivars exported from New Zealand are Actinidia chinensis ‘Hort 16A’ (gold kiwifruit) and A. deliciosa ‘Hayward’ (green kiwifruit). Under current commercial practice the only product allowed for use on kiwifruit to increase fruit size in New Zealand is Benefit®. Benefit® has been shown to induce different results when applied to A. chinensis and A. deliciosa, whereas synthetic plant growth regulators such as the cytokinin-like substance N-(2- chloro-4-pyridyl)-N’-phenylurea (CPPU) have been found to promote similar increases in fresh weight of fruit in both cultivars. Final fruit size is determined by both cell division and cell enlargement. It was been shown that fresh weight can be increased in both of the major Actinidia cultivars even though their physiology differs. Hormonal control of fruit size in relation to cell division and cell enlargement phases of fruit growth was studied in both A. chinensis and A. deliciosa. CPPU was applied to both cultivars in a growth response experiment where fruit were collected throughout the growing season. The objective of this experiment was to create growth curves, to compare and contrast the effect on A. chinensis and A. deliciosa, and to provide material for hormone analysis. Application of CPPU was found to significantly increase the fresh weight of both A. chinensis and A. deliciosa fruit (46.98 and 31.34 g increases respectively), and alter the ratio of inner and outer pericarps of A. chinensis fruit. CPPU and Benefit® were applied individually and together to both cultivars. It was found that only A. chinesis fruit were affected by the application of Benefit®; fresh weight was increased by 26.38 g, and percentage dry matter was significantly reduced. There was a statistically significant (p < 0.05) interaction between CPPU and Benefit® when applied to A. chinensis. 3,5,6-trichloro-2-pyridyloxyacetic acid (3,5,6-TPA) was applied to A. deliciosa on two application dates at three concentrations and was found to decrease fresh weight of fruit, but significantly increase percentage dry matter regardless of application date or concentration. Lastly CPPU and 1-naphthalene acetic acid (NAA) were applied to A. deliciosa at two application dates and in all combinations. Application date affected the response to both a low concentration of CPPU and NAA. A synergistic interaction was observed when CPPU was applied early plus NAA late (CPPU early (4.53 g increase) plus NAA late (13.29 g) < CPPU early plus NAA late (33.85 g). Finally endogenous hormone content was studied. Methods were developed and tested for the simultaneous analysis of both indole-3-acetic acid (IAA) and cytokinins. Freeze dried fruit were purified using Waters Sep-pak® cartridges and Oasis® columns then IAA was quantified by high pressure liquid chromatography. Preliminary results indicate a correlation between application of CPPU and endogenous IAA, high concentrations of IAA correlated well with periods of rapid fruit growth particularly for CPPU treated fruit.

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32

Reiser, Axel. "Resource efficiency of the ski industry in New Zealand." Lincoln University, 2002. http://hdl.handle.net/10182/1266.

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Skiing and snowboarding are popular recreation activities in New Zealand, as well as constituting important components of the winter tourism product. The 2001 snow season witnessed record visitor numbers. Skier days have increased by more than 10% compared with the previous year to 1.254 million. The traditionally “nature related” activity of skiing, however has increasingly often been discussed in the light of excessive resource consumption and pollution of alpine environments. Since no research on resource efficient management of ski fields has been undertaken in New Zealand, this study examined environmental awareness and actions of ski field managers, resource consumption benchmarks (water and energy use, solid waste production), along with resource use related visitor behaviour. Two separate surveys were undertaken to collect relevant information from ski field managers and ski field visitors. While a census of managers across New Zealand was conducted with a mail-back questionnaire (all 27 ski fields were contacted, response rate 44%), the visitor survey was undertaken on-site at six selected ski fields in Canterbury, South Island (total responses: N=259). Analysis of the survey results showed that managers generally acted to protect the environment and resources, however, at different levels for the various indicators measured. Energy use and air pollution were rarely perceived to be environmentally important. Accordingly, only few actions were undertaken to reduce energy use. This is surprising, since energy consumption proved to be a major feature of ski field management. Given the additionally large amounts of water consumed (mainly for snowmaking) and solid waste produced on the mountain, skiing has to be classified as a resource intensive activity. Resource consumption is intensified further, when the impacts associated with tourists being transported to, and from, the mountain are considered. Energy use for “ski trip transport” within New Zealand is two times larger (180 MJ) than energy use associated with ski field infrastructure use (90 MJ) on a per skier day basis. There are several options to improve the environmental performance of ski fields, ranging from modernising equipment, optimising snowmaking and providing efficient transport alternatives. Additionally, increased cooperation between ski field managers, local governments and research institutes could potentially result in environmentally smarter operational practices. Internationally, New Zealand’s ski areas compare relatively well, mainly because of limited on-mountain entertainment and accommodation development, which keeps resource consumption and pollution low compared with European and North American ski fields. However, this research also indicated that New Zealand’s ski field visitors increasingly demand facilities and services similar to those overseas, which in turn may result in larger environmental impacts. New Zealand is generally believed to be a green and nature-related destination and its ski areas still blend well into the natural environment. Hence, there is some potential for the New Zealand ski industry to develop a unique product in such a way that it is both, sustainable and distinguishable from other international markets.

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Menzies, Diane. "Clean and green? Environmental quality on the New Zealand dairy farm." Lincoln University, 1999. http://hdl.handle.net/10182/1553.

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This study explores issues arising from the adoption of the term 'clean and green' for marketing New Zealand dairy products. Three dimensions of environmental quality were investigated: that of sustainable dairying and best practice for the benefit of farmers and the industry; resource management legislation and being a 'good neighbour'; and export marketing opportunities and issues. The study was undertaken during a time of major structural upheaval in the dairy industry, including yearly company amalgamations in the study area, rapid conversion of farmland to dairying, as well as factory expansion to process the increasing supply of product. The focus of the study was on the individual farmer, how perceptions and preferences are formed, and how in turn, these influence farm practice. World views drawn from Cultural Theory were adopted as the basis for analysis. Farmers were classified according to particular world views and the symbolic and reflexive use of concepts such as 'clean and green' was analysed. A model of overlapping ecological, agricultural and social systems was used to develop a wider understanding of preference formation. Through a mixed methodology, focusing on a case study approach, farmer and stakeholder world views were compared on key themes, including the 'clean green' pastoral myth, 'cues for care' and environmental issues. Media discourse as well as consumer views were used to expand understanding of the context. The study found that both farmers (within their groups) and stakeholders held different objectives and opinions on environmental issues and options for change, based on their various world views and preferences. There was general agreement both among farmers and stakeholders on the New Zealand 'clean green' image and 'cues for care', or signs that indicate good farm management. The reason for this was demonstrated to be the way in which these two aspects are communicated; through symbolic images that each individual perceived in terms of their respective world view. A symbolic form of action, an environmental management system, was trialled with farmers. Analysis indicated that national aspirations created by the 'clean green' pastoral myth required farmers to respond to environmental expectations, but that an image that symbolized environment as care and quality, rather than as place was needed to provide a less ambiguous goal. The findings of the trial were integrated with theory to interpret context and develop policy, strategy and action proposals for a system for environmental quality for the industry. The study has implications for non-regulatory mechanisms relevant to sustainable dairy farming, communication within the rural community, and branding.

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34

Kusumo, Bambang Hari. "Development of field techniques to predict soil carbon, soil nitrogen and root density from soil spectral reflectance : a thesis presented in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Soil Science at Massey University, Palmerston North, New Zealand." Massey University, 2009. http://hdl.handle.net/10179/1015.

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The objectives of this research were to develop and evaluate a field method for in situ measurement of soil properties using visible near-infrared reflectance spectroscopy (Vis-NIRS). A probe with an independent light source for acquiring soil reflectance spectra from soil cores was developed around an existing portable field spectrometer (ASD FieldSpecPro, Boulder, CO, USA; 350-2500 nm). Initial experiments tested the ability of the acquired spectra to predict plant root density, an important property in soil carbon dynamics. Reflectance spectra were acquired from soil containing ryegrass roots (Lolium multiflorum) grown in Allophanic and Fluvial Recent soils in a glasshouse pot trial. Differences in root density were created by differential nitrogen and phosphorus fertilization. Partial least squares regression (PLSR) was used to calibrate spectral data (pre-processed by smoothing and transforming spectra to the first derivative) against laboratory-measured root density data (wet-sieve technique). The calibration model successfully predicted root densities (r2 = 0.85, RPD = 2.63, RMSECV = 0.47 mg cm-3) observed in the pots to a moderate level of accuracy. This soil reflectance probe was then tested using a soil coring system to acquire reflectance spectra from two soils under pasture (0-60 mm soil depths) that had contrasting root densities. The PLSR calibration models for predicting root density were more accurate when soil samples from the two soils were separated rather than grouped. A more accurate prediction was found in Allophanic soils (r2 = 0.83, RPD = 2.44, RMSECV = 1.96 mg g-1) than in Fluvial Recent soils (r2 = 0.75, RPD = 1.98, RMSECV = 5.11 mg g-1). The Vis-NIRS technique was then modified slightly to work on a soil corer that could be used to measure root contents from deeper soil profiles (15- 600 mm depth) in arable land (90-day-old maize crop grown in Fluvial Recent soils). PLSR calibration models were constructed to predict the full range of maize root densities (r2 = 0.83, RPD = 2.42, RMSECV = 1.21 mg cm-3) and also soil carbon (C) and nitrogen (N) concentrations that had been determined in the laboratory (LECO FP- 2000 CNS Analyser; Leco Corp., St Joseph, MI, USA). Further studies concentrated on improving the Vis-NIRS technique for prediction of total C and N concentrations in differing soil types within different soil orders in the field. The soil coring method used in the maize studies was evaluated in permanent and recent pastoral soils (Pumice, Allophanic and Tephric Recent in the Taupo-Rotorua Volcanic Zone, North Island) with a wide range of soil organic matter contents resulting from different times (1-5 years) since conversion from forest soils. Without any sample preparation, other than the soil surface left after coring, it was possible to predict soil C and N concentrations with moderate success (C prediction r2 = 0.75, RMSEP = 1.23%, RPD = 1.97; N prediction r2 = 0.80, RMSEP = 0.10%, RPD = 2.15) using a technique of acquiring soil reflectance spectra from the horizontal cross-section of a soil core (H method). The soil probe was then modified to acquire spectra from the curved vertical wall of a soil core (V method), allowing the spectrometer’s field of view to increase to record the reflectance features of the whole soil sample taken for laboratory analysis. Improved predictions of soil C and N concentrations were achieved with the V method of spectral acquisition (C prediction r2 = 0.97, RMSECV = 0.21%, RPD = 5.80; N prediction r2 = 0.96, RMSECV = 0.02%, RPD = 5.17) compared to the H method (C prediction r2 = 0.95, RMSECV = 0.27%, RPD = 4.45; N prediction r2 = 0.94, RMSECV = 0.03%, RPD = 4.25). The V method was tested for temporal robustness by assessing its ability to predict soil C and N concentrations of Fluvial Recent soils under permanent pasture in different seasons. When principal component analysis (PCA) was used to ensure that the spectral dimensions (which were responsive to water content) of the data set used for developing the PLSR calibration model embraced those of the “unknown” soil samples, it was possible to predict soil C and N concentrations in “unknown” samples of widely different water contents (in May and November), with a high level of accuracy (C prediction r2 = 0.97, RMSEP = 0.36%, RPD = 3.43; N prediction r2 = 0.95, RMSEP = 0.03%, RPD = 3.44). This study indicates that Vis-NIRS has considerable potential for rapid in situ assessment of soil C, N and root density. The results demonstrate that field root densities in pastoral and arable soil can be predicted independently from total soil C, which will allow researchers to predict C sequestration from root production. The recommended “V” technique can be used to assess spatial and temporal variability of soil carbon and nitrogen within soil profiles and across the landscape. It can also be used to assess the rate of C sequestration and organic matter synthesis via root density prediction. It reduces the time, labour and cost of conventional soil analysis and root density measurement.

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Pratt, Caroline. "Factors affecting the establishment, growth and survival of native woody plant communities on the Canterbury Plain, New Zealand." Lincoln University, 1999. http://hdl.handle.net/10182/1113.

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The native plant communities of Canterbury, South Island, New Zealand have been severely modified and degraded and the Canterbury Plain (750,000 ha) retains few remnants of its original forest and other ecosystems. The research presented here considers the mutualistic roles of exotic and indigenous species in the process of restoring degraded landscapes. Exotic species may have an important role in the (re) establishment of desired indigenous species, and may influence succession through to a forest dominated by them. One aspect of this work describes indigenous plant community regeneration facilitated by exotic willow (Salix spp.) woodland on the Canterbury Plain. Natural colonisation of the willow woodland by native plants was investigated, with respect to variation in the physical environment in the willow stand. Key factors in the success of willow woodland as a nursery for regeneration of native vegetation include: distance to the nearest seed source, the ability to attract seed dispersers (recruitment only occurred under perch sites), flooding potential (higher recruitment in areas less likely to flood) and possibly light availability. Control of vertebrate (and invertebrate) herbivory is also necessary for successful restoration. A second aspect was a field experiment in open pasture and in a non-native remnant woodland which was then used to investigate the effects of shelter, plant spacing, mulching and fertiliser on growth and survival of planted native woody species. With minimal management, the selected mid-late successional plants established poorly in the open pasture and had low survival rates (e.g.,Dacrycarpus dacrydioides, Pseudopanax arboreus, Aristotelia serrata, Melicytus ramiflorus). Only narrow-leaved species (e.g., Plagianthus reg ius, Hoheria angustifolia, Hebe salicifolia, Cordyline australis) survived this open pasture planting. In contrast, most species (broad and narrow-leaved) established under the sheltered sites. Exotic nursery vegetation and the establishment of native species, which will, in time, act as a seed source, will be important in successfully restoring a sustainable indigenous element in the cultural landscape of Canterbury. Ecological restoration requires an integrated approach, identifying and understanding the component processes of regeneration, and of the particular aspects/characteristics of the sites involved. This research shows that naturally established plants where existing shelter is available (in this case established willows) tend to have higher growth rates than individually planted plants in open situations, and that the availability of a suitable seed source can also contribute to successful establishment and growth rates. The meeting of restoration targets on the Canterbury Plain may be accelerated, and costs reduced, through the utilisation of areas where exotic species occur (for instance, extensive willow stands in riparian areas adjacent to waterways) and more particularly, where a local seed source is also available. The findings of this research can contribute to restoration management in helping identify the best practices, based on research, that can lead to the restoration of original plant and animal communities.

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36

Painter, Brett D. M. "Optimisation of permeable reactive barrier systems for the remediation of contaminated groundwater." Diss., Lincoln University, 2005. http://hdl.handle.net/10182/12.

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Permeable reactive barriers (PRBs) are one of the leading technologies being developed in the search for alternatives to the pump-and-treat method for the remediation of contaminated groundwater. A new optimising design methodology is proposed to aid decision-makers in finding minimum cost PRB designs for remediation problems in the presence of input uncertainty. The unique aspects of the proposed methodology are considered to be: design enhancements to improve the hydraulic performance of PRB systems; elimination of a time-consuming simulation model by determination of approximating functions relating design variables and performance measures for fully penetrating PRB systems; a versatile, spreadsheet-based optimisation model that locates minimum cost PRB designs using Excel's standard non-linear solver; and the incorporation of realistic input variability and uncertainty into the optimisation process via sensitivity analysis, scenario analysis and factorial analysis. The design methodology is developed in the context of the remediation of nitrate contamination due to current concerns with nitrate in New Zealand. Three-dimensional computer modelling identified significant variation in capture and residence time, caused by up-gradient funnels and/or a gate hydraulic conductivity that is significantly different from the surrounding aquifer. The unique design enhancements to control this variation are considered to be the customised down-gradient gate face and emplacement of funnels and side walls deeper than the gate. The use of velocity equalisation walls and manipulation of a PRB's hydraulic conductivity within certain bounds were also found to provide some control over variation in capture and residence time. Accurate functional relationships between PRB design variables and PRB performance measures were shown to be achievable for fully penetrating systems. The chosen design variables were gate length, gate width, funnel width and the reactive material proportion. The chosen performance measures were edge residence, centreline residence and capture width. A method for laboratory characterisation of reactive and non-reactive material combinations was shown to produce data points that could realistically be part of smooth polynomial interpolation functions. The use of smooth approximating functions to characterise PRB inputs and determine PRB performance enabled the creation of an efficient spreadsheet model that ran more quickly and accurately with Excel's standard non-linear solver than with the LGO global solver or Evolver genetic-algorithm based solver. The PRB optimisation model will run on a standard computer and only takes a couple of minutes per optimisation run. Significant variation is expected in inputs to PRB design, particularly in aquifer and plume characteristics. Not all of this variation is quantifiable without significant expenditure. Stochastic models that include parameter variability have historically been difficult to apply to realistic remediation design due to their size and complexity. Scenario and factorial analysis are proposed as an efficient alternative for quantifying the effects of input variability on optimal PRB design. Scenario analysis is especially recommended when high quality input information is available and variation is not expected in many input parameters. Factorial analysis is recommended for most other situations as it separates out the effects of multiple input parameters at multiple levels without an excessive number of experimental runs.

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Kartikasari, Sri Nurani. "Your biodiversity in my backyard : key local stakeholders' perceptions of biodiversity conservation in Gorontalo, Indonesia." Lincoln University, 2008. http://hdl.handle.net/10182/1188.

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The establishment of protected areas (PAs) has been the key national strategy in biodiversity conservation, through preserving the unique wildlife and ecosystems in Indonesia. As well as their status as sites rich in biodiversity, PAs are also important for socio-economic interactions. Hence the management of PAs has been fraught with technical, social and economic problems. To ensure greater local participation and support in tropical forest conservation initiatives, it is vital to understand how local stakeholders perceive them. This research was undertaken in Gorontalo Province by examining the views of local stakeholders through a combination of qualitative interviews and quantitative ranking exercises. The findings revealed that respondents only understood the concept of biodiversity on a general level. Most respondents defined biodiversity in terms of its elements; only a few were able to describe the interactional attributes, by which biodiversity functions within the ecosystems. Their appreciation of forest biodiversity was primarily due to economic and ecological benefits they derive from local forests. Accordingly, respondents ranked the provision of ecological services from the forests as the strongest reason for protecting it. Using Wood et al. (2000) analytical framework to examine the root causes of biodiversity loss, the findings indicated respondents’ familiarity with human-induced forces resulting in the degradation and loss of natural forests, and they understood how these affect local biodiversity, both within and beyond the forest. Some critical disconnections between national policy in forest conservation and the reality of the local use of forest resource became apparent. At the core of these disconnections was an unequal share of benefits of such policy to local stakeholders. They identified extraction of species and physical alteration of the forest ecosystem as direct drivers of forest loss; these were perceived as rooted in poverty, institutional failures in forest management, ignorance of the wider forest functions, and conflict of development policies at the local level. The main reason for biodiversity loss can be summed up as widespread and persistent failure to properly understand, quantify, or value the goods, services, functions and capital value of the natural forests, at both national and local levels. Overall, most respondents held negative attitudes towards protected forests and their positive attitudes towards conservation activities were linked with tangible benefits they enjoy from the forest. A key finding of this study is that the conservation of biodiversity cannot be considered in isolation from broader patterns of natural resource use and the socio-political context in which people carry out their lives. This study suggests that the implementation of the centrally-controlled and preservationist conservation approach in Gorontalo has been ineffective in achieving conservation goals. This is due to the lack of a clear connection between this policy and the reality of local forest users.

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Pitt, Joel Peter William. "Modelling the spread of invasive species across heterogeneous landscapes." Diss., Lincoln University, 2008. http://hdl.handle.net/10182/912.

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Invasive species are well known to cause millions of dollars of economic as well as ecological damage around the world. New Zealand, as an island nation, is fortunate because it has the opportunity to regulate and monitor travel and trade to prevent the establishment of new species. Nevertheless foreign species continue to arrive at the borders and continue to cross them, thus requiring some form of management. The control and management of a new incursion of an invasive species would clearly benefit from predictive tools that might indicate where and how quickly the species is likely to spread after it has established. During the process of spread an invasing species must interact with a complex and heterogeneous environment and the suitability of the habitat in a region determines whether it survives. Many dispersal models ignore such interactions and while they may be interesting theoretical models, they are less useful for practical management of invasive species. The purpose of this study was to create and investigate the behaviour of a spatially explicit model that simulates insect dispersal over realistic landscapes. The spatially explicit model (Modular Dispersal in GIS, MDiG) was designed as am open-source modular framework for dispersal simulation integrated within a GIS. The model modules were designed to model an an approximation of local diffusion, long distance dispersal, growth, and chance population mortality based on the underlying suitability of a region for establishment of a viable population. The spatially explicit model has at its core a dispersal module to simulate long distance dispersal based an underlying probability distribution of dispersal events. This study illustrates how to extract the frequency of long distance dispersal events, as well as their distance, from time stamped occurrence data, to fit a Cauchy probability distribution that comprises the dispersal module. An investigation of the long distance dispersal modules behaviour showed that, in general, it generated predictions of the rate of spread consistent with those of analytical partial differential and integrodifference equations. However, there were some differences. Spread rate was found to be mainly dependent on the measurement technique used to determine the invasion front or boundary, therefore an alternative method to determine the boundary of a population for fat-tailed dispersal kernels is presented. The method is based on the point of greatest change in population density. While previously it was thought that number of foci rather than foci size was more important in stratified dispersal and that finer resolution simulations would spread more quickly, simulations in this study showed that there is an optimal resolution for higher spread rates and rate of area increase. Additionally, much research has suggested that the observed lag at the beginning of an invasion may be due to lack of suitable habitats or low probability of individuals striking the right combination of conditions in a highly heterogeneous environment. This study shows an alternative explanation may simply be fewer dispersal event sources. A case study is described that involved the application of the spatially explicit dispersal model to Argentine ant spread to recreate the invasion history of that species in New Zealand. Argentine ant is a global invasive pest which arrived in New Zealand in 1990 and has since spread to both main islands of New Zealand, primarily through human mediated dispersal. The spatially explicit simulation model and its prediction ability were compared to that of a uniform spread model based on equivalent total area covered. While the uniform spread model gave more accurate predictions of observed occurrences early in the invasion process it was less effective as the invasion progressed. The spatially explicit model predicted areas of high probability of establishment (hot spots) consistent with where populations have been found but accuracy varied between 40-70% depending on the year of the simulation and parameter selection. While the uniform spread model sometimes slightly outperformed or was equivalent to the simulation with respect to accuracy early in the invasion process, it did not show the relative risk of establishment and was less effective later in the invasion when stochastic random events generated by the simulation model were averaged to represent trends in the pattern of spread. Additionally, probabilistic predictions as generated by the spatially explicit model allow the uncertainty of prediction to be characterised and communicated. This thesis demonstrates that heterogeneous spread models can give more insight and detail than one dimensional or homogeneous spread models but that both can be useful at different stages of the invasion process. The importance of compiling appropriate data on dispersal and habitat suitability to aid invasion management has been highlighted. Additionally, a number of important hypotheses that need to be addressed to increase understanding of how species interact with the complex environment, have been identified and discussed.

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Kay, M. K. (Nod). "An experimental evaluation of resource allocation in island plants with respect to their invertebrate herbivores." Lincoln University, 2008. http://hdl.handle.net/10182/1442.

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New Zealand’s isolation and periods of marine transgression have limited its biota to an extent which can be considered depauperate, even by island standards. Endemic vertebrates are rare and prominent invertebrate families, such as the renowned forest defoliators of the Lymantriidae, are absent. The proven vulnerability of the flora to introduced vertebrates reaffirms a belief in the invasiveness of islands and fuels the contingency plans aimed at averting similar devastation from further alien invertebrate defoliators. Nothofagus is a dominant element of the climax forests of New Zealand and the larger landmasses bordering the South Pacific Ocean. Assessments of the resistance to defoliation of continental and New Zealand species of Nothofagus, and a range of other forest genera endemic to New Zealand, was undertaken using bioassays of naïve polyphagous defoliators. The bioassays were undertaken in Europe, utilising gypsy moth, Lymantria dispar (Lepidoptera: Lymantriidae) and the fall webworm, Hyphantria cunea (Lepidoptera: Arctiidae) as defoliators, fed foliage plants growing in European arboreta. In New Zealand, bioassays utilised Australian painted apple moth, Teia anartoides (Lepidoptera: Lymantriidae) and tree species from local arboreta, gardens and natural populations. Larval growth rate was the primary parameter recorded to assess plant resistance. The relevance of growth rate was investigated by comparison with other recorded parameters and resistance to a surrogate pathogen, in the form of commercially available bio-insecticide. Larval growth rate was positively correlated with survivorship, potential fecundity, mating success and resistance to disease. The growth rate of larvae fed Nothofagus was positively correlated to the species-specific leaf nitrogen content. The results of the bioassays showed that despite the accepted paradigms, New Zealand’s flora was largely resistant to exotic defoliators. As an explanation of this apparent anomaly, the Island Resource Allocation (IRA) hypothesis was developed and posits that ‘the palatability iv of a plant to invertebrate herbivores is proportional to the geographic range of the plant’. The basis for the IRA hypothesis proposes a redefinition of the fundamental ecological principle of the species: area relationship. Islands, or similarly geographically constrained ecosystems, which support lower biodiversity, have impoverished trophic levels and consequently have weaker top-down regulation of herbivores by natural enemies. The IRA hypothesis argues that island ecosystem stability is achieved through the bottom-up process of plant defence. The IRA hypothesis was tested intra-specifically using bioassays using painted apple moth in which larvae were offered foliage of specimens from naturally discontinuous populations of Nothofagus truncata. The results supported the hypothesis in that the smallest populations of N. truncata exhibited the greatest resistance to the defoliator. The IRA hypothesis and a demonstrated mechanism for a differential resistance in Nothofagus species could resolve a number of enduring debates in ecology. Habitat area appears to explain the relative strengths of top-down and bottom-up regulation of herbivores. It also predicts the strengths of reciprocal evolution within the geographic mosaic of co-evolution and highlights the influence of biodiversity in invasive ecology. It may also help to resolve the contentious and extremely relevant debate of the role of biodiversity in ecosystem function.

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40

Wakefield, Benita. "Haumanu taiao ihumanea: collaborative study with Te Tai O Marokura Kaitiaki Group : Tuakana Miriama Kahu, Teina Benita Wakefield." Lincoln University, 2008. http://hdl.handle.net/10182/1335.

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The health of the environment is integral to the health and wellbeing of the people. When the balance between Atua, whenua and tangata is disrupted, desecrated, disturbed or violated, it can have a detrimental impact on these relationships. This research study explored alternative indigenous paradigms for conceptualizing an environmental health framework that would improve the potency and health of all living things. A key question of the research study was to explore how Ngati Kuri sought to strengthen their relationship and connection with the natural world. The Hapu established Te Tai O Marokura health and social services as a vehicle to improve potency: healthy environments, healthy people. The specificity of Ngati Kuri experiences provided a broader context for researching and theorizing about restorative models that utilized traditional knowledge localized to a particular area. Another key question was to examine how Maori cultural values that were embedded within a worldview, could offer insights and constructs for new ways of being and thinking in the modern world. Kaupapa Maori philosophical positioning and theorizing informed the approaches and practices underpinning the study. The key aspects of the methodology were constructed around the tikanga principles of tinorangatiratanga, whakapapa and kaitiakitanga to provide a rationale for the collaboration formed with the Hapu. At the heart of the thesis is the validity given to the collective ownership of indigenous knowledge which challenges the fictional notion of a singular, temporally bound authorship. The thesis reflects the whakawhanaungatanga (reciprocal understanding) relationship between the Tuakana represented by Miriama Kahu and the Teina, Benita Wakefield working collaboratively with the Kaitiaki construct group formed to ensure that the use of indigenous knowledge and its transmission processes had honest transparency. The Tuakana was responsible for providing guidance, wisdom and mentoring to the Teina, the enrolled academic student responsible for producing the written thesis. These innovative collaborative Kaupapa Maori methods and practices in the study have tested the boundaries of conventional doctoral processes, breaking university academic regulations and challenging the western academy in the political nature of collective knowledge production and validity of indigenous knowledge. Qualitative and quantitative processes, approaches and methods were also utilized to inform the study and to ensure reflexivity of research practices. The key findings of the study were: • Improving potency requires a depth of intimacy and connection with all living things that involves a reciprocal understanding of the relationship between Atua, whenua and tangata. • Indigenous knowledge is localized to a spatial area and embedded within a worldview that validates and affirms cultural values and beliefs which continue to have relevance in more contemporary times. • The transformative nature of alternative indigenous paradigms must encompass the totality of creation, humanity and their genealogical and inter-generational linkages to all life. A major contribution of this PhD has been to create new knowledge, ways of thinking and meaning for restoring potency through the environmental health conceptual framework grounded in cultural and spiritual values. The specific focus on Ngati Kuri traditional knowledge authentic to the Hapu and their application, has significantly contributed towards constructing alternative indigenous approaches for meeting the challenges within the modern world.

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41

Gillies, Craig. "Aspects of the ecology and management of small mammalian predators in northern New Zealand." 1998. http://hdl.handle.net/2292/1942.

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Each chapter in this thesis has been written as a separate paper intended for later publication. Rather than write one summary, an abstract for each chapter has been given in the order they are presented in the thesis. Chapter I. The prey species of domestic cats (Felis catus) in two suburbs of Auckland city, New Zealand. The prey brought in by 80 cats (Felis catus), over a year was monitored in two suburbs of Auckland New Zealand. The survey technique followed that of Churcher & Lawton (1987) where cat owners were asked to record (and if possible keep) the prey their cats brought in. The results for the year indicated that there were distinct differences in the type of prey taken by cats in each area. Rodents were the most important prey brought in by domestic cats in an urban / forest fringe habitat and invertebrates were the main prey brought in by domestic cats in a fully urban habitat. Birds and lizards were the second and third most important prey groups in both study areas. Rat and mouse snap trap indexes which were run at each study location, did not detect rodents in the urban habitat. The results from the urban/forest fringe concurred more with studies of feral cat diet in New Zealand whilst those from the urban area compared more to studies of domestic and stray cat diet in urban areas overseas. There were seasonal trends in the prey captured in each area and in both areas cats hunted less over the winter months. Chapter II. Diets of coexisting alien mammalian carnivores in Northern New Zealand. 120 feral cats, 85 stoats (Mustela erminea), 28 weasels (M. nivalis) and 16 ferrets (M. furo) were caught over three years, in Northland, New Zealand. The gut contents of these animals were examined and their food habits described. The main prey groups of cats were (in order of importance by weight), lagomorphs, rodents (Rattus spp & Mus musculus), other mammals, birds and invertebrates. The main prey of stoats were rodents, birds, lagomorphs, skinks (Cyclodina spp) and invertebrates. Skinks, followed by mice, were the main prey of weasels. Rabbits (Oryctolagus cuniculus) were the most commonly occurring prey item in the ferret guts. The food habits for cats and stoats were compared between different habitats within the Northland region where these animals were collected from. There was little difference between habitats, but invertebrates occurred more frequently and lagomorphs less frequently in the diet of animals from forest habitats compared to those from forest / pasture and coastal habitats. No differences were found in the prey of male and female cats, but invertebrates occurred more frequently in the guts of sub-adult cats compared to adult cats. Skinks occurred more frequently in the guts of female stoats, which tended to take smaller prey items than males. Chapter III. Home range of introduced mammalian carnivores, feral cats (Felis catus), stoats (Mustela erminea) and a ferret (M. furo) at Trounson Kauri Park, Northland, New Zealand. The minimum home ranges of eleven feral cats, four stoats and one male ferret were examined by radio telemetry at Trounson Kauri Park in Northland New Zealand. The average minimum home range of male feral cats was 305 ± 74ha. This was not significantly larger than the 122 ± 35 ha minimum average home range of female cats. The minimum average home range of three male stoats was 108 ± 19 ha and the minimum home range of one female stoat was 50 ha. The male ferret had a minimum home range of 179 ha. There was no overlap spatially, in the home range of three adult male cats. There was also very little spatial overlap in the home range of four female cats. There was substantial home range overlap with four sub-adult male cats. The home ranges of these sub-adult male cats also overlapped spatially with those of the adjacent females and adult males. The home ranges of two male stoats overlapped spatially to some degree and the home range of another male stoat overlapped that of the female stoat substantially. The home range of the male ferret overlapped the home ranges of all of the cats occupying similar areas of the park. The home ranges of two male stoats overlapped the home ranges of the adjacent cats but not into the "core" areas of those cats ranges. Chapter IV. Secondary poisoning of introduced mammalian carnivores during possum and rodent control operations at Trounson Kauri Park, Northland New Zealand. Predatory mammals were monitored by radio telemetry through a 1080 then brodifacoum poison baiting operation at Trounson Kauri Park in Northland, New Zealand to target possums (Trichosurus vulpecula) and rodents (Rattus rattus, Rattus norvegicus & Mus musculus). All six feral cats (Felis catus), and the single stoat (Mustela erminea) and ferret (Mustela furo) being monitored at the beginning of the operation died of secondary poisoning following the 1080 operation. A further two cats and four stoats were radio tagged and monitored through the ongoing poisoning campaign using brodifacoum in a continuous baiting regime. None of these radio tagged carnivores died of secondary poisoning. However, tissue analysis of additional carnivores trapped at Trounson found that cats, weasels (Mustela nivalis) and to a lesser extent stoats did contain brodifacoum residues. The duration that the radio tagged predators were alive in and around Trounson Kauri Park suggested that the secondary poisoning effect was much reduced under the continuous baiting strategy, compared to the initial 1080 poison operation. Chapter V. Managing alien mammals in mainland New Zealand: The implications for predator/prey interactions in complex communities. Recent advancements in alien pest mammal control technologies have enabled conservation managers to attempt long term, large scale, predator and browser control programmes at mainland sites in New Zealand. At Trounson Kauri Park (in Northland, New Zealand) feral cats, ferrets, stoats and weasels plus rodents and possums were controlled for two and a half years. Early results from Trounson suggested that some native birds and plants responded positively and quickly to the control of these alien pest mammals. However, the management also affected the predator-prey and predator-predator interactions, within the mammalian community, with changes in the predator guild and some prey species increasing in abundance. The long term effects of these responses within the mammalian community to control efforts are unclear. A review of the international literature served only to confirm the view that managing alien mammals where re-invasion is constant will be a complex task. Conservation management at mainland sites like Trounson Kauri Park, may in effect be acting as crude mammalian predator removal experiments. Monitoring changes in predator-prey interactions and predator-predator interactions at this and other intensive management sites over sufficient time frames could provide scientists with the critical ecological data required to construct useful predictive models. The ability of managers to target specific pests at critical times would represent a significant advancement in controlling predatory mammals on the New Zealand mainland.

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42

Ito, Masayoshi 1967. "Non-filterable metals (NFM) in the atmosphere." 2003. http://hdl.handle.net/2292/1954.

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A new air sampler, the Mist-UV sampling system, has been developed to trap and detect metals and metal compounds present in atmospheric samples, as non-filterable metal (NFM). The Mist-UV system is based on the combination of two ideas, mixing the filtrated air sample with nitric acid mist and simultaneous ultraviolet irradiation of the mist. Atmospheric NFM in the introduced air samples, which were first passed through a 0.2 µm filter, were oxidised by UV irradiation and dissolved in the nitric acid mist. The trapped metals resulting from the NFM in nitric acid were quantitatively determined using ICP-MS. Using the Mist-UV system, measurements of atmospheric NFM concentrations were carried out to obtain their temporal and spatial trends in Auckland, New Zealand. Five metals (Mg, Al, Cu, Ba and Sr) were detected as NFM in ambient air. Elevated atmospheric concentrations of Mg, Cu, and Ba were detected in midsummer and in daytime samples. The UV oxidisable fraction dominated the NFM and high enrichment factors (EFcrust) were found for these metals. This suggested that natural emissions of organometals or reduced metals were responsible for the elevated atmospheric concentrations. Meteorological factors, particularly air temperature, light irradiation and rainfall, promoted biogenic activity and resultant NFM emissions. Remarkably high concentrations of Al and Sr as NFM were discovered in several air samples and were dominated by the non-oxidisable compounds. This implies that the sources of Al and Sr were mainly from inorganic or oxidised metals associated with fine particulates. Wet and dry soils appeared to be the sources of Mg+Ba and Al+Sr, respectively. Plant emissions are recognised as important sources of Mg, Cu and Ba as NFM in ambient air, whereas the suspension of fine particulates derived from road dust and soil enriched with non-oxidisable compounds are seen as the major sources of Al and Sr. The emissions from automobiles and seawater samples were found to be unimportant NFM sources. The NFM concentrations were found to be significantly higher than concentrations of particulate metals, therefore the atmospheric importance and role of NFM cannot be ignored in the estimation of global metal circulation and budgets.

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43

Adeeb, Farah. "A Study of near-surface ozone concentrations in the city of Auckland, New Zealand." 2006. http://hdl.handle.net/2292/2571.

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This research provides insight into large-scale spatial variation of ozone (O3) distribution in the Auckland region and was designed to increase our understanding of O3 behaviour and distribution in a coastal-urban situation. The research was also carried out with a view to assisting regulatory agencies optimize future monitoring networks, and to help identify locations where human health and natural resources could be at risk in the future. Although the research was limited to one region, the results are valuable for improving the conceptual understanding of formation of high ozone concentrations in a more general sense in the New Zealand and Southern Hemisphere. The work reported in this thesis is aimed at studying O3 concentrations and the influence of the most relevant meteorological variables on an average coastal New Zealand city where precursor emissions are mainly due to traffic exhaust. It deals with the use of Principal Component Analysis method for determining O3 concentrations as a function of meteorological parameters. The study region includes the entire Auckland isthmus, and extends from Whangaparaoa in the North to Pukekohe in the South. Surface O3 data from four sites (Whangaparaoa, Musick Point, the Sky Tower and Pukekohe) for a 4-year period(October 1997 to October 2001) for the Auckland region were examined. Ambient concentration of O3 was characterized in terms of diurnal, weekday/weekend, seasonal and spatial variations in concentration using O3 measurements from the four air quality sites. The monthly average ambient background O3 concentrations at the monitoring sites during this study ranged from 16-30 ppb, much lower than those found in the Northern Hemisphere. The measured seasonal O3 record in the Auckland region, in common with many other remote sites in the Southern Hemisphere, exhibited a summer minimum and a winter maximum. Background concentrations of O3 (as seen in air of marine origin) made a significant contribution to the observed ambient concentrations. A unique feature of Auckland's air quality was the dilution of polluted city air due to the mixing of east coast air into the cleaner west coast circulation leading to overall lower average O3 concentrations in summer. The magnitude, frequency and spatial extent of maximum O3 concentrations were identified, and the observed patterns linked to the prevailing meteorological, topographic, and emission characteristics of the region. However, at no time at any site or season did the O3 concentration exceed the l-hour New Zealand Ministry for the Environment guideline of 75 ppb. O3 depletion was observed to occur at the urban sites, with O3 scavenging by nitric oxide believed to be the dominant depletion mechanism. The seasonal cycle was characterized by elevated O3 concentrations in the winter (nighttime level >24 ppb) and low mixing ratios in the summer (nighttime levels in the range 14-20 ppb). The afternoon O3 maxima found at the three low elevation sites under the impact of "Auckland city" plume were on average, 1.5 to 1.7 times higher than those associated with the "marine sector". A state of the art diagnostic meteorological model, namely CALMET, was used to generate wind fields for the Auckland region. These wind fields were then used to construct backward trajectories on days when high O3 concentrations (episodes up to 6l ppb) were observed. The un-even distribution of the meteorological monitoring sites provided justification for running the diagnostic model CALMET and exploring the utility of using such a model when topography/land use prohibits monitoring sites in certain sections of the domain. It was found that the high O3 events recorded at the monitoring sites during the study period coincided with transport episodes originating from Auckland's urban and industrial areas. For the occurrence of high O3 concentrations at downwind sites, it was found that not only wind direction from the urban areas of Auckland, but that high solar radiation was important as well. On four out of the five cases when photochemical production of O3 was found to occur, high O3 concentrations were associated with a particular type of diurnal evolution of wind direction wind fields associated with the sea breezes. In addition to the analysis of ambient o3 concentrations and O3 episodes, field measurements were carried out in an attempt to detect and subsequently understand the interaction between particulate matter and O3 in the Auckland region, a multivariate statistical analysis approach was utilized. Particulate matter in the size range 2.75-6.25 μm accounted for over 70% of the total aerosol concentration at all sampling sites. Surface area of particulate matter variable (especially in the size class 2.75-4.25 μm) was statistically significant in explaining variation in O3 concentration. However, the net change in the adjusted R2 indicated that the effect of adding particulate matter in the multiple regression model for the present dataset was relatively minor except at Musick Point.

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44

Jansen, van Rensburg Monique. "Parasitism, disease and breeding ecology of little blue penguins (Eudyptula minor) on Tiritiri Matangi Island, New Zealand : a thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Conservation Biology, Massey University, Auckland." 2010. http://hdl.handle.net/10179/1634.

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Appendix 4.4 removed due to copyright restrictions: Suepaul, R.B., Alley, M.R., Jansen van Rensburg, M., 2010, Salt gland adenitis associated with bacteria in blue penguins (Eudyptula minor) from Hauraki Gulf (Auckland, New Zealand). Journal of Wildlife Diseases, 46(1) : 46-54.
According to the New Zealand Threat Classification, little blue penguin (LBP) (Eudyptula minor) populations are under ‘gradual decline’. Although long-term data are available for some mainland populations, the status of LBP on offshore islands remains largely unknown. Most studies have focussed on breeding success and foraging ecology. However, there is a paucity of data pertaining to diseases and parasites, and the potential effects of these factors on LBP health, reproductive success and survival. To date, the LBP population on Tiritiri Matangi Island, Hauraki Gulf, Auckland, New Zealand, has only been monitored periodically, despite the island being an important habitat for LBP throughout their annual cycle. The overall aim of this study was to examine the relative importance of parasites and disease in relation to key aspects of LBP life-history, including: the annual cycle; reproductive success; energetic demands, immunity; and mortality. During 2006 and 2007, the reproductive success of LBP on Tiritiri Matangi Island was investigated with respect to lay date, nest site attributes, parental quality and ectoparasite loads. A nest treatment experiment was conducted to explore flea (Parapsyllus longicornis) and tick (Ixodes eudyptidis) effects on breeding success. Overall reproductive output was low, estimated at 33.3%, with an average of 0.67 chicks fledged per pair. Lay date and body condition (BC) appeared to be the main drivers of reproductive success, with early breeders fledging significantly more chicks than late breeders. Increased BC improved reproductive success. Although late breeders exhibited higher BC scores, increased chick mortality indicated that late nests face a reproductive trade-off. Treatment did not prove effective in reducing ectoparasite loads and there was no correlation between ectoparasite abundance in the nest and reproductive success. Throughout their geographic distribution, penguins are host to a range of ectoparasites. Using Ixodes eudyptidis ticks as indicators, ectoparasite-host dynamics were investigated over the course of one year, in relation to LBP life stages, body condition (BC) and haematological parameters. To investigate the presence of vector-borne diseases, blood parasite prevalence was determined using molecular techniques and microscopy. Tick load exhibited significant seasonal variation, being highest during periods of increased host availability i.e. moult and breeding. However, these increases in abundance were not associated with body condition or decreased reproductive success of adults. Nonetheless, LBP exhibited seasonal fluctuations in haematological parameters, with decreases in white blood cell concentrations during periods of increased energy demands and high tick loads. Blood parasite prevalence was low (<1%), determined to be Plasmodium sp. infection. No other blood parasites were found. These results indicate that the lifecycle of I. eudyptidis is tightly linked with that of its LBP hosts, and that infested individuals exhibit physiological responses to tick load. LBP exhibit annual fluctuations in mortality and experience periodic mass mortalities. To examine factors associated with mortality, post-mortems were conducted on 32 LBP from the Hauraki Gulf. Additionally, 128 LBP necropsy records were obtained from the National Wildlife Database (HUIA) for the period spanning April 1993-January 2009, and the causes of mortality were reviewed. Starvation and disease accounted for the highest mortality levels, with 65% of deaths attributed to either one or both of these factors. Furthermore, there was a strong association between starvation and parasites. Parasitic disease and diseases of uncertain aetiology were the most common disease types. In all age groups, the likelihood of infectious, non-infectious and disease of unknown aetiology was significantly higher in LBP that harboured one or more parasite species. Results from this study suggest that starvation and disease, including parasites, are significant factors associated with mortality of LBP in New Zealand, as has been found in Australian LBP populations. Parasites and disease are increasingly recognised as a challenge to the conservation of wildlife, and information regarding endemism of pathogens and parasites within populations is vital for determining ecosystem health, and identifying aberrant diseases.

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45

Berry, Oliver Fleetwood. "The spatial ecology and phylogeography of the grand skink (Oligosoma grande) : implications for the conservation of an endangered species : a thesis presented in fulfillment of the requirements for the degree of Doctor of Philosophy in Molecular BioSciences at Massey University, Palmerston North, New Zealand." 2004. http://hdl.handle.net/10179/1747.

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Species conservation relies on determining the mechanisms that cause endangerment. This thesis documents the conservation ecology and phylogeography of an endangered lizard, Oligosoma grande, from southern New Zealand, and tests hypotheses that may explain its endangered status. Grand skinks are large rock-dwelling lizards endemic to montane grasslands in central Otago, New Zealand. They are classified as vulnerable to extinction by IUCN criteria and are the subject of intensive management. The causes of their endangerment are not well understood, but changes to landscape connectivity caused by agricultural development have been implicated. I developed microsatellite and mitochondria1 DNA markers, and combined them with field studies to address four key problems relevant to the conservation of this species. First, I investigated the ability of newly developed analytical tools for genetic data (assignment tests) to provide qualitative and quantitative dispersal information. I show that assignment tests can provide highly accurate dispersal information, and describe the circumstances where they perform best. Second, building on these results, I combined genetic and demographic data to provide an empirical account of how two forms of agricultural landuse affect the connectivity of skink populations. I show that the nature of the vegetation matrix between skink populations both quantitatively and qualitatively affected dispersal patterns, but also that characteristics of individual populations play a role in determining dispersal dynamics. Third, following the evidence that grand skink populations were very insular, I used parentage and kinship analysis to investigate the extent of inbreeding and inbreeding avoidance behaviours. It is often assumed that close inbreeding is harmful and animals should avoid it by either dispersing after birth, or recognising and avoiding mating with kin. However, I found no evidence for inbreeding avoidance or inbreeding depression. Finally, I used phylogeographic analyses to understand the contributions of historical and contemporary processes to O. grande's rarity and fragmented distribution. I demonstrate that that the current fragmented distribution has both historical as well as recent anthropogenic origins. Some populations show evidence of recent declines that may have occurred since human settlement in New Zealand, but in addition, more ancient biogeographic processes have driven population fragmentation.

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46

Boyer, Anne-Sophie. "Microbial infection of avian eggs : a threat to all synchronously incubating species? Case study of New Zealand's little blue penguin (Eudyptula minor) : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science in Conservation Biology at Massey University, Auckland, New Zealand." 2010. http://hdl.handle.net/10179/1365.

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Microbial infection of eggs was originally investigated in terms of human health only. Recently, however, it was found that it can also cause early embryo mortality in birds, mainly through trans-shell infection prior to incubation. Trans-shell infection is highly dependent upon environmental conditions, egg temperature and egg properties such as shell quality and antimicrobial defences. Microbial infection of eggs is more likely to occur in synchronously incubating species as first laid eggs can be exposed for up to several days prior to full incubation. One example of a population that seems at particular risk of egg microbial infection is New Zealand’s little blue penguin (Eudyptula minor) from Tiritiri Matangi Island. This bird lays two eggs on average three days apart, and is believed to begin full incubation only after the second egg has been laid. Both eggs are laid in particularly humid and soiled nests and contain only low levels of lysozyme, an important antimicrobial protein. The aims of this study were therefore to 1) obtain a first examination of the rates of shell and trans-shell microbial infection of chicken eggs in New Zealand and assess the effects of cleaning on those rates, 2) investigate the role of microbes in hatching failure of little blue penguin eggs and 3) investigate other factors affecting little blue penguin egg viability. This study revealed that shell infection in chicken eggs significantly increased with exposure and significantly decreased with cleaning; however, trans-shell infection was only marginally affected by exposure and cleaning. On Tiritiri Matangi Island, Hauraki Gulf, New Zealand, nest type, egg order and shell cleaning did not affect hatching success, suggesting that nest conditions and microbial infection prior to incubation were not a major cause of egg mortality in this population. Temporary abandonment during incubation, however, was very frequent in the second half of the breeding season and fatal to most eggs. These temporary abandonments seemed to be caused by resource limitations, an aspect that should be investigated in future studies.

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Ayanegui, Alcérreca María Alejandra. "Epidemiology and control of leptospirosis in farmed deer in New Zealand : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Veterinary Clinical Science at Massey University, Palmerston North, New Zealand." 2006. http://hdl.handle.net/10179/1470.

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Missing pages 93, 264 & 313 from electronic and Vault (preservation) copy.
Leptospirosis has been reported in farmed deer in New Zealand since 1980 but knowledge was limited. Studies presented in this thesis investigated the epidemiology and distribution of infection associated with serovars Hardjobovis, Pomona, and Copenhageni in farmed deer, efficacy of a vaccine and the influence of maternally derived antibody, and aspects of exposure of humans to leptospirosis. Serology, bacteriology, and pathology were employed as determinants of infection and vaccine efficacy. A serological survey of 2016 deer from 110 herds confirmed leptospirosis throughout New Zealand with 61.3% of herds infected with Hardjobovis and 3.6% with Pomona alone, 16.4% with dual infections with those serovars, and none with Copenhageni, giving an overall herd prevalence of 81.3%. Epidemiological studies involved serological analysis of samples from a serum bank involving weaner, yearling and adult deer (n=10/group) from 15 farms sampled 3-monthly for 21 months, and intensive blood and urine sampling of young deer on three farms over 1-2 production cycles (n=15-65/group). Infection with Hardjobovis followed an age-related endemic cycle with some animals infected by 3-4 months of age and seroconversion peaking at up to 57% at 12-15 months and mild kidney lesions typical of a host-adapted organism. Infection with Pomona followed an epidemic pattern with seroprevalence of up to 100%, more severe kidney lesions, clinical signs and evidence of reduced growth and reproduction, typical of an accidental host relationship. Leptospira were observed in 30.4% of urine samples and 37.0% of kidneys. Vaccination with "Leptavoid 3" (Schering-Plough Animal Health Ltd) was studied on one non-infected, one Hardjobovis infected, and two dual Hardjobovis/Pomona infected herds. Vaccination produced sustained titres in uninfected young and adult deer, and no maternally derived antibody interference was observed in progeny vaccinated at approximately 3-4 months of age. In infected herds, vaccination enhanced seroprevalence and antibody titres, and reduced urine shedding by 44% and culture from urine and kidneys by 37% in the face of continued natural challenge. Analysis of previous data combined with pooled data from the above studies, indicated that 73.0% of lines and 29.0% of individual deer at slaughterhouses had kidney lesions indicative of leptospirosis with a relative risk (RR) of 1.08 and 1.6 for the relationship between seropositivity to Hardjobovis and Pomona, respectively. The overall RR between positive serology, lesion and culture was 2.1. The kidney culture rate ranged from 2.5-33% between herds demonstrating significant risk of exposure to humans, particularly slaughterhouse workers. This study has provided an understanding of the epidemiology in farmed deer and control options available to the industry.

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48

Mupeyo, Bornwell. "The effect of feeding willow upon the death of established parasites and upon parasite fecundity : a thesis presented in partial fulfilment of the requirements for the degree of Animal Science at Massey University, Palmerston North, New Zealand." 2010. http://hdl.handle.net/10179/1712.

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Two indoor feeding experiments were conducted at the Animal Physiology Unit (APU) of Massey University, involving young sheep, to investigate the effect of feeding forage willow upon the death of established parasites and upon parasite fecundity, using chaffed lucerne as the control diet. Experiment 1: Twenty-four (24) parasite-free weaned hoggets weighing 29.9 ±1.2 kg (SD) were individually penned and fed chaffed lucerne ad libitum during a preexperimental adaption period of 5 weeks. They were then fed either lucerne chaff or chopped willow for a further 5 weeks (n = 12/group) and intakes were adjusted such that the DMI of the two groups was similar during weeks 9 & 10. All lambs were infected with L3 larvae parasites comprising 20,650 Teladorsagia, 1,320 Trichostrongylus and 330 Cooperia through oral drenching 12 days before willow feeding started. This was done after confirmation that the sheep were free of nematodes through FEC analysis. Total faeces were collected for 3 day periods towards the end of weeks 9 & 10, to measure diet digestibility and total faecal egg excretion. The sheep were slaughtered at the end of week 10. Voluntary feed intake (VFI), FEC and liveweight were measured weekly, whilst burdens of individual parasites and carcass characteristics were measured after slaughter. Duplicate samples of each feed offered and individual animal refusals were taken daily and pooled weekly per animal for chemical analysis. Female worm fecundity was calculated by two methods. Blood samples for immunological analysis were collected on days 20, 34, 51 and 70, and analysed for components of white blood cells (WBC) and for lymphocyte subsets. Experiment 2: A 2 x 2 changeover experiment was conducted, involving two time periods (Period 1 and Period 2 each of 14 days) with the same diets as used in Experiment 1, fed to 9 individually penned parasite-free young sheep randomly allocated to experimental diets. The parameters investigated were FEC and larvae hatching. Initially, a period of 7 days was allowed for acclimatisation in which both groups were fed on half willow and half lucerne chaff. This was followed by Period 1 with 4 lambs fed lucerne and 5 fed willow, after which the diets were changed over for Period 2. Total faeces produced were collected from all animals on the last day of each period using bagged sheep. A known number of Teladorsagia eggs (500 epg) was then added to faecal samples from these sheep and faeces-egg mixtures were made from which FEC was determined, to see if egg recovery was affected by these diets. Faecal samples for Period 2 with added eggs were also incubated for 10 days to measure hatchability. The recovery of added Teladorsagia eggs in Experiment 2 was 85% in lucerne-fed lambs and 53% willow-fed lambs (P<0.001); these were used as correction factors for Experiment 1 data. Larvae that hatched per gram of wet faeces in Experiment 2 tended to be lower for sheep fed willow than lucerne chaff (71% vs 83% of eggs added; P=0.08). Willow feed offered had lower DM (P<0.001) and CP (P<0.05) content, but had a significantly higher OM content (P<0.01) than lucerne chaff. Condensed tannin content of chopped willow was 27 g/kg DM, with only traces for lucerne. Apparent digestibility for DM (62.4% vs 59.5%; P≤0.05), OM (64.8% vs 59.9%; P≤0.001), DOMD (58.1% vs 55.0%; P≤0.01) and calculated ME (9.48 MJ/kg vs 8.96 MJ/kg; P≤0.01) were higher for the willow diet. VFI was similar for both groups during the adaption period (P>0.05) but declined with the introduction of willow in week 6 (P<0.001) and then progressively increased until it was similar to lucerne-fed sheep in weeks 9 & 10 (P>0.05). Calculated DM intake per head/day during the last two weeks of Experiment 1 was similar for the two groups (P>0.05); while the willow group had higher ME (P<0.01) and CP (P<0.001) intake per animal/day. Liveweight increased for the two groups during the adaption period (P>0.05), then declined for willow-fed lambs in week 6 (P<0.001) but later increased and by week 10 was similar to that of lucerne-fed lambs. The willow-fed lambs had lower carcass GR than the lucerne-fed lambs (P<0.01) when carcass weight was used as a covariate. Adjusted total daily egg production in Experiment 1 was lower in willow-fed sheep than lucerne-fed sheep, due to reductions for Haemonchus spp. (P<0.05) and Teladorsagia spp. (P<0.05). The per capita fecundity for Haemonchus worm spp. (P<0.05) and the in utero fecundity in both abomasal Teladorsagia spp. and small intestinal Trichostrongylus spp. (P<0.001) were lower for willow-fed sheep. There was reduced production of larvae for both Haemonchus spp. and Teladorsagia spp. (P<0.05) in willow-fed sheep. Feeding willow reduced the burden of Haemonchus adult worms in the abomasum (P<0.01) but reduced female worm burden only in Teladorsagia spp. (P<0.05) and reduced Cooperia spp. in the small intestines (P<0.01). Total WBC, total lymphocytes, subsets of lymphocytes and other white-cell groups were not affected by willow feeding (P>0.1). It was concluded that feeding chopped willow to young sheep reduced nematode worm burdens in the abomasum, especially both male and female Haemonchus spp., and reduced female worm burdens of Teladorsagia spp. Female worm fecundity of both species was also reduced by willow feeding. These reductions have been associated with CT content in the willow feed and the reduced worm burdens have been attributed to the death of the established worms by CT, since there was no evidence of immune priming in willow-fed sheep. Compounds present in the faeces of willow-fed sheep have been found to mask some of the nematode eggs, making them invisible by microscopic examination while keeping their viability. It is postulated that this could be due to binding of nematode eggs to insoluble CT associated with indigestible fibre in the faeces of willow-fed sheep. Conventional methods of measuring FEC therefore underestimated nematode eggs present in the faeces of willow-fed sheep and this needs to be checked for other CT-containing forages.

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49

Wilson, Nathaniel James. "The behaviour of antimony in geothermal systems and their receiving environments." 2009. http://hdl.handle.net/2292/4230.

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Antimony (Sb) is an element of increasing concern as an environmental contaminant. Geothermal systems are a potential source of Sb in the fresh waters of New Zealand’s North Island, but little is known about the element’s behaviour within geothermal fluids, and even less about the eventual fate of geothermally produced Sb. The purpose of this thesis was to determine the factors controlling geothermal Sb behaviour in a range of environments, in order to begin to develop an understanding of the eventual fate of Sb produced from geothermal systems. Factors controlling Sb precipitation at two New Zealand geothermal power stations, were determined using field measurements and geochemical model predictions. Approximately 75 % of the incoming Sb, which ranged from 960 – 1650 μg/kg in the incoming fluids was removed from solution within the Ngawha and Rotokawa power stations. It was found that changes in pH and temperature were the most important factors controlling stibnite (Sb2S3) precipitation. Thermodynamic databases could be used to model this precipitation process, once updated with recent published Sb2S3 solubility data. The mobility of Sb from Sb2S3 precipitates in geothermal features at Wai-O-Tapu and Waimangu, two New Zealand geothermal fields, were investigated. At Wai-O-Tapu, daytime variations in aqueous Sb concentrations from the discharge of Champagne Pool may be due to to changing sulfide-sulfate equilibria coupled with photosynthetic bacterial processes. While daytime concentrations of Sb approached 200 μg/kg, most of the Sb remobilised by such mechanisms appears to be removed by adsorption onto suspended particulate material (SPM) or reprecipitation (as Sb2S3) in an anoxic, low pH lake feature downstream. Concentrations of Sb in the discharge from Alum Lake were below the analytical detection limit (<0.2 μg/kg). At Waimangu, these daytime fluctuations were not observed in the discharge of Frying Pan Lake, and concentrations of Sb were ~13 μg/kg. In the absence of any downstream acidic waters, no precipitation was observed and only minor adsorption onto SPM was observed. Most of the Sb produced from Frying Pan Lake is therefore transported into Lake Rotomahana, the system’s receiving environment. Natural Sb removal processes in receiving (non-geothermal) environments were also assessed. In the Waikato River, Sb concentrations were low (~1 μg/kg), compared to those observed in geothermal environments studied. The most important process was adsorption to SPM, which is enhanced at low (< 5) pH conditions, or in the anoxic base of stratified lakes. In Lake Ohakuri, which was stratified during the summer of 2007, there was also the potential for the removal of Sb as Sb2S3 in the presence of sulfide species that form in the anoxic layer. There was evidence that the adsorption of Sb changes with changing Fe concentrations in suspended particulate material, and therefore Sb adsorption was higher in winter than in summer. The behaviour of Sb was conservative in the Port Waikato estuary at the mouth of the river. Throughout the research, Sb was compared to arsenic (As), a metalloid previously thought to exhibit behaviour similar to Sb in aquatic environments. It was found that while any removal processes shown to affect Sb will also affect As, the inverse did not necessarily apply. Arsenic will adsorb more readily to SPM than Sb and, while there was evidence for bioaccumulation of As by geothermal algae and freshwater macrophytes, there was no such evidence for Sb. Therefore, if geothermally-derived Sb and As did ever significantly contaminate a downstream environment, it should not be assumed that the processes mitigating As contamination will necessarily also apply to Sb.

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50

Mshanga, Deogratius Andrew. "Development of in vitro assays for detection of anthelmintic resistance in cattle nematodes : a thesis presented in partial fulfilment of the requirements for the degree of Master of Science (Animal Science) at Massey University, Palmerston North, New Zealand." 2007. http://hdl.handle.net/10179/1231.

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The principle aim of the current research was to modify the larval development assay (LDA) for use with Cooperia from cattle. A series of experiments were conducted in order to modify the LDA protocol to determine the most appropriate culture media and incubation temperature. These initial experiments concluded that, of the protocols examined, a culture medium of 1/8th the concentration of E. coli (EC) + 1/4th the concentration of yeast extract (YE) as generally used to culture sheep nematodes, at a culture temperature of 18ºC, resulted in the optimum number of Cooperia larvae developed to the third larval stage (L3). However, the number of eggs that developed to L3 was still generally low. A comparison was then made using isolates from a farm with a history of resistance in Cooperia to ivermectin (IV) and benzimidazoles (BZ) and two farms with a history of no resistance in this parasite. These experiments were undertaken using 1/8EC + 1/4YE media protocol and 1/2EC + 1/2YE concentration of the standard culture media for sheep nematodes. These three isolates were cultured at temperature of 18ºC and 25 ºC in the commercially available DrenchRite® 96-well microtitre assay plates which contained BZ, levamisole (LV) and IV in doubling dilutions within an agar matrix. The LD50 values were determined from a dose response curve. The resulting LD50 values were very variable, especially for the IV analogues. There was no obvious difference between the resistant and susceptible farms for the LD50 values of BZ or IV. A secondary aim of this research was to investigate the potential usefulness of the larval feeding inhibition assay (LFIA). This was adopted as published and it was determined it could be used to distinguish between susceptible and resistant Teladorsagia circumcincta with a resistance ratio of at least six. This research concluded that further research is required to fully optimise the LDA for Cooperia in cattle but adequate dose response curves were determined to indicate it struggles to distinguish BZ and IV resistance. The LFIA deserves to be further investigated as it offers some scope to detect ivermectin resistance in cattle nematodes as the dose response curves demonstrated a good repeatability for T. circumcincta from sheep. Comparing LDA and LFIA, both assays seemed to be useful but the latter was considered to have greater potential.

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Dissertations / Theses on the topic 'Fields of Research – 300000 Agricultural, Veterinary and Environmental Sciences – 300800 Environmental Science'

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