Dissertations / Theses on the topic 'FBA modeling'
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Ong, Wai, Trang Vu, Klaus Lovendahl, Jenna Llull, Margrethe Serres, Margaret Romine, and Jennifer Reed. "Comparisons of Shewanella strains based on genome annotations, modeling, and experiments." BioMed Central, 2014. http://hdl.handle.net/10150/610105.
Full textLin, Bingcan. "A new FEA modelling of porous solids." Available from the University of Aberdeen Library and Historic Collections Digital Resources, 2009. http://digitool.abdn.ac.uk:80/webclient/DeliveryManager?application=DIGITOOL-3&owner=resourcediscovery&custom_att_2=simple_viewer&pid=59600.
Full textAdiamah, Delali. "Genome-scale integrative modelling of gene expression and metabolic networks." Thesis, University of Manchester, 2012. https://www.research.manchester.ac.uk/portal/en/theses/genomescale-integrative-modelling-of-gene-expression-and-metabolic-networks(4fb25bda-2890-4b64-94e1-3e5b538cd1a5).html.
Full textLloyd, Joshua S. "Commercialization of Software for the Prediction of Structural and Optical Consequences Resulting from Corneal Corrective Treatments." Case Western Reserve University School of Graduate Studies / OhioLINK, 2016. http://rave.ohiolink.edu/etdc/view?acc_num=case1447778132.
Full textHu, Yajie. "Thermal Barrier Coating Modeling for Stress Analysis." Thesis, Université d'Ottawa / University of Ottawa, 2021. http://hdl.handle.net/10393/42668.
Full textBeck, Johannes Christian. "Analysis of diurnal gene regulation and metabolic diversity in Synechocystis sp. PCC 6803 and other phototrophic cyanobacteria." Doctoral thesis, Humboldt-Universität zu Berlin, 2018. http://dx.doi.org/10.18452/19240.
Full textCyanobacteria are photoautotrophic prokaryotes populating virtually all habitats on the surface of the earth. They are one of the prime producers for the global food chain. To cope with the daily alternation of light and darkness, cyanobacteria harbor a circadian clock consisting of the three proteins KaiA, KaiB, and KaiC, whose biochemical interactions result in a phosphorylation cycle with a period of approximately 24 hours. I conducted three time-series experiments in the model organism Synechocystis sp. PCC 6803, which revealed a tight diurnal schedule of gene activation. However, I could not identify any self-sustained oscillations. On the contrary, I observed strong diurnal accumulation of ribosomal RNAs during dark periods, which challenges common assumptions on the amount of ribosomal RNAs. Due to their high growth rates and low demand on their environment, cyanobacteria emerged as a viable option for sustainable production of biofuels. For an industrialized production, however, optimization of growth and comprehensive knowledge of the cyanobacterial metabolism is inevitable. To address this issue, I analyzed the orthology of multiple cyanobacteria and studied the conservation of genes and metabolic pathways. Systematic analysis of genes shared by similar subsets of organisms indicates high rates of functional relationship in such co-occurring genes. I designed a novel approach to identify modules of co-occurring genes, which exhibit a high degree of functional coherence and reveal unknown functional relationships between genes. Complementing the precomputed modules, I developed the SimilarityViewer, a graphical toolbox that facilitates further analysis of co-occurrence with respect to specific cyanobacterial genes of interest. Simulations of automatically generated metabolic reconstructions revealed the biosynthetic capacities of individual cyanobacterial strains, which will assist future research addressing metabolic engineering of cyanobacteria.
Qin, Dongyan. "Specificity and structural modeling of FHA domain of CHK2 and a general characterization of FHA domain of caenorhabditis elegans CHK2." The Ohio State University, 2003. http://rave.ohiolink.edu/etdc/view?acc_num=osu1061304007.
Full textAnwar, Aamir. "Low Frequency Finite Element Modeling of Passive Noise Attenuation in Ear Defenders." Thesis, Virginia Tech, 2005. http://hdl.handle.net/10919/31186.
Full textMaster of Science
Schatt, Nathan A. "Finite Element Modeling of Ultrasonic Wire Bonding on Polyvinyl Acetate-Nanocomposite Substrates." Case Western Reserve University School of Graduate Studies / OhioLINK, 2014. http://rave.ohiolink.edu/etdc/view?acc_num=case1396634471.
Full textLi, Jie. "High frequency power transformer modelling for frequency response analysis (FRA) diagnosis." Thesis, University of Manchester, 2008. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.538489.
Full textJavaid, Usman. "Modeling of a Tunable Film Bulk Acoustic Resonator and Bandpass Filter Design by using Ferroelectric Film." Thesis, Högskolan i Gävle, Avdelningen för elektronik, matematik och naturvetenskap, 2011. http://urn.kb.se/resolve?urn=urn:nbn:se:hig:diva-9432.
Full textZeng, Sai. "Knowledge-based FEA Modeling Method for Highly Coupled Variable Topology Multi-body Problems." Diss., Georgia Institute of Technology, 2004. http://hdl.handle.net/1853/4772.
Full textLi, Jiayuan. "Fast Modeling of the Patient-Specific Aortic Root." Case Western Reserve University School of Graduate Studies / OhioLINK, 2021. http://rave.ohiolink.edu/etdc/view?acc_num=case1612364612715906.
Full textDi, Fiore Silvia. "La dimensione discorsiva della Politica di Coesione. Confronto fra Content Analysis e Topic Modeling." Bachelor's thesis, Alma Mater Studiorum - Università di Bologna, 2018. http://amslaurea.unibo.it/17284/.
Full textSylliaasen, Scott J. "The Development and Validation of a Finite Element Model of a Canine Rib For Use With a Bone Remodeling Algorithm." DigitalCommons@CalPoly, 2010. https://digitalcommons.calpoly.edu/theses/415.
Full textWang, Shen. "Modeling and Design of Planar Integrated Magnetic Components." Thesis, Virginia Tech, 2003. http://hdl.handle.net/10919/34400.
Full textMaster of Science
Tavakoli, Hanif. "A High Frequency Transformer Winding Model for FRA Applications." Licentiate thesis, Stockholm : Skolan för elektro- och systemteknik, Kungliga Tekniska högskolan, 2009. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-11178.
Full textPardelha, Filipa Alexandra Guerreiro. "Constraint-based modelling of mixed microbial populations: Application to polyhydroxyalkanoates production." Doctoral thesis, Faculdade de Ciências e Tecnologia, 2013. http://hdl.handle.net/10362/13111.
Full textThe combined use of mixed microbial cultures (MMC) and fermented feedstock as substrate may significantly decrease polyhydroxyalkanoates (PHA) production costs and make them more competitive in relation to conventional petroleum-based polymers. However, there still exists a lack of knowledge at metabolic level that limits the development of strategies to make this process more effective. In this thesis, system biology computational tools were developed and applied to PHA production by MMC from fermented sugar cane molasses, rich in volatile fatty acids (VFA). Firstly, a metabolic network able to describe the uptake of complex mixtures of VFA and PHA production was defined. This metabolic network was applied to metabolic flux analysis (MFA) to describe substrate uptake and PHA production fluxes over the enrichment time of a culture submitted to the feast and famine regimen. Then, the minimization of the tricarboxylic acid cycle (TCA) fluxes was identified as the key metabolic objective of a MMC subjected to this regimen by flux balance analysis (FBA). This model enabled to predict, with an acceptable accuracy, the PHA fluxes and biopolymer composition. Subsequently, data gathered from microautoradiography-fluorescence in situ hybridization (MAR-FISH) was used to develop a segregated FBA model able to predict the flux distribution for the three populations identified in the enriched culture. These results were slightly better than those obtained by the non-segregated FBA and were consistent with MFA results. Finally, a dynamic metabolic model was proposed based on the previous models and on a regulatory factor for VFA uptake and PHA production. This model allowed to identify the dynamics of the process and regulatory factor as well as to validate the previous results. Globally, this thesis enabled to demonstrate the potential of using computational tools to understand and optimize PHA production by MMC.
Kisioglu, Yasin. "A new design approach and FEA modeling for imperfect end-closures of DOT specification cylinders /." The Ohio State University, 2000. http://rave.ohiolink.edu/etdc/view?acc_num=osu1488203552779138.
Full textWang, Yiren. "Modelling and characterisation of losses in nanocrystalline cores." Thesis, University of Manchester, 2016. https://www.research.manchester.ac.uk/portal/en/theses/modelling-and-characterisation-of-losses-in-nanocrystalline-cores(eddd2c60-7322-4665-9176-b45e53621285).html.
Full textNarla, Sandeep. "Modeling and Control of Switched Reluctance Machines for Four-quadrant Operation." University of Akron / OhioLINK, 2010. http://rave.ohiolink.edu/etdc/view?acc_num=akron1291919332.
Full textChaloupka, Ondrej. "Modelling evolution of anisotropy in metals using crystal plasticity." Thesis, Cranfield University, 2013. http://dspace.lib.cranfield.ac.uk/handle/1826/8435.
Full textBowes, David Christian. "Numerical modelling of ti6A14V machining : a combinded FEA and unified mechanics of cutting approach." Thesis, Stellenbosch : Stellenbosch University, 2013. http://hdl.handle.net/10019.1/80353.
Full textENGLISH ABSTRACT: In this study, Ti6Al4V machining is modelled using finite element analysis of orthogonal machining. Orthogonal turning tests are conducted for the verification of FE models in terms of machining forces, temperatures, and chip geometry. Milling force predictions are made using the "unified" mechanics of cutting model which is applied to ball nose milling for this study. The model makes use of orthogonal cutting data, collected from the turning tests, to model milling forces. Model predictions are compared with test data from slot milling tests for verification. Finally a hybrid form of the "‘unified"’ model is presented in which orthogonal data, obtained from the FE simulations, is used to model ball nose milling operations.
AFRIKAANSE OPSOMMING: In hierdie studie word titaanmasjinering (Ti6Al4V) gemodelleer deur gebruik te maak van eindige element analise van ortogonale masjinering. Ortogonale draai toetse word uitgevoer om eindige element (FE) modelle te verifieer in terme van masjineringskragte, temperatuur en spaandergeometrie. Freeskragte word voorspel deur gebruik te maak van die "Unified Mechanics of Cutting" model wat toegepas word op ’n balneusfrees operasie in hierdie studie. Die model maak gebruik van ortogonale snydata, versamel gedurende snytoetse, om die freeskragte te modelleer. Die model word vervolgens vergelyk met die toetsdata afkomstig van die freestoetse vir verifikasie. Ten slotte word ’n hibriede weergawe van die model aangebied waarin ortogonale data verkry word van die FE simulasie om balneus freesoperasies te simuleer.
Myles, John Robert. "Electronic Speckle Pattern Interferometry (ESPI) NDE of cracks in pressure vessels with FEA modelling." Master's thesis, University of Cape Town, 1997. http://hdl.handle.net/11427/6922.
Full textThis dissertation describes the results of an attempt to simulate the Electronic Speckle Pattern Interferometric fringe patterns observed around a crack or combination of cracks in a pressure vessel by finite element methods. Electronic Speckle Pattern Interferometry (ESPI) is a coherent optical measurement technique that produces a contour map of the surface displacement of an object when it is stressed. The sensitivity of the techniques is of the order of half the Wavelength of light. The objective of the study was to determine a procedure for the modelling of interferometric fringes by finite elements. The finite element model may then be used to study the effects of crack geometry on fringe patterns and produce a library of reference fringe patterns for comparison with experimental fringe patterns found for unknown flaws. The approach to the problem was to simulate the fringe patterns for a crack free cylinder and compare these with these observed experimentally. The FE model modulus of elasticity was than to be calibrated to minimise uncertainty in the exact value of the elastic modulus. Once the model was calibrated, various cracks and combinations of cracks were introduced into both the physical cylinders and the FE model and fringe patterns obtained were compared. The experimental results for the cracks and combinations of cracks were compared with the finite element predictions at a range of loads.
Tavakoli, Hanif. "An FRA Transformer Model with Application on Time Domain Reflectometry." Doctoral thesis, KTH, Elektroteknisk teori och konstruktion, 2011. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-48568.
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Lashore, Michael. "Mathematical Model Validation of a Center of Gravity Measuring Platform Using Experimental Tests and FEA." DigitalCommons@CalPoly, 2015. https://digitalcommons.calpoly.edu/theses/1467.
Full textSteinhaus, Thomas. "Determination of intrinsic material flammability properties from material tests assisted by numerical modelling." Thesis, University of Edinburgh, 2010. http://hdl.handle.net/1842/3273.
Full textFranklin, Tyler Kazuo. "MODELING THE ZIMMER FITMORE AND ML TAPER IMPLANTATION." DigitalCommons@CalPoly, 2013. https://digitalcommons.calpoly.edu/theses/1053.
Full textWest, Connor M. "Continuum Modeling of the Densification of W-Ni-Fe during Selective Laser Sintering." DigitalCommons@CalPoly, 2016. https://digitalcommons.calpoly.edu/theses/1577.
Full textDavies, Oluwafemi. "Recombinant protein production in the chloroplast of microalgae : a systems biology approach." Thesis, University of Manchester, 2015. https://www.research.manchester.ac.uk/portal/en/theses/recombinant-protein-production-in-the-chloroplast-of-microalgae-a-systems-biology-approach(fe23d3a0-a882-48e0-8171-53cc05225db2).html.
Full textMarmiesse, Lucas. "Mathematical modelling of the transcriptional network controlled by MYB30 and MYB96, two transcription factors involved in the defence response of the model plant Arabidopsis thaliana." Thesis, Toulouse 3, 2016. http://www.theses.fr/2016TOU30278.
Full textOver the years, a lot of data has been accumulated concerning the role and regulation of MYB30 and MYB96 transcription factors during the defence responses of the plant Arabidopsis thaliana in response to pathogenic bacteria. My PhD project consisted in using mathematical modelling methods to study the role of these transcription factors on plant metabolism during infection. I developed hybrid methods capable of combining analyses of regulatory and metabolic networks. These studies showed the importance of MYB96 which seems to positively regulate many genes involved in the biosynthesis of very long chain fatty acids and their derivatives
Messenger, Robert K. "Modeling and Control of Surface Micromachined Thermal Actuators." Diss., CLICK HERE for online access, 2004. http://contentdm.lib.byu.edu/ETD/image/etd434.pdf.
Full textZavvos, Aristeidis. "Structural optimisation of permanent magnet direct drive generators for 5MW wind turbines." Thesis, University of Edinburgh, 2013. http://hdl.handle.net/1842/8299.
Full textMisiran, Masnita. "Modeling and pricing financial assets under long memory processes." Thesis, Curtin University, 2010. http://hdl.handle.net/20.500.11937/2549.
Full textPaul, Ewart D. "Micro-mechanical predictive modelling as an aid to CAD based analysis of composite sporting equipment." The University of Waikato, 2008. http://hdl.handle.net/10289/2509.
Full textHan, Sijing. "Design and Modeling Environment for Nano-Electro-Mechanical Switch (NEMS) Digital Systems." Case Western Reserve University School of Graduate Studies / OhioLINK, 2013. http://rave.ohiolink.edu/etdc/view?acc_num=case1354568246.
Full textAlmahmoud, Omar H. M. "Design Optimization of Functionalized Silica-Polymer Nanocomposite through Finite Element and Molecular Dynamics Modeling." Thesis, University of North Texas, 2020. https://digital.library.unt.edu/ark:/67531/metadc1707245/.
Full textSemple, Jennifer K. Semple. "Pedigreed Material Property Data for Residual Stress and Distortion Modeling of Naval Steel Weldments." The Ohio State University, 2018. http://rave.ohiolink.edu/etdc/view?acc_num=osu1533813179740352.
Full textLee, Wayne Yeung. "Numerical Modeling of Blast-Induced Liquefaction." BYU ScholarsArchive, 2006. https://scholarsarchive.byu.edu/etd/524.
Full textJohansson, Robert. "Finite element modeling of straightening of thin-walled seamless tubes of austenitic stainless steel." Thesis, Högskolan Dalarna, Materialteknik, 2016. http://urn.kb.se/resolve?urn=urn:nbn:se:du-21463.
Full textHasan, Iftekhar Hasan. "Modeling and Analysis of High Torque Density Transverse Flux Machines for Direct-Drive Applications." University of Akron / OhioLINK, 2017. http://rave.ohiolink.edu/etdc/view?acc_num=akron1515582377354583.
Full textLivingston, Richard Verile. "Comparison of Heat Generation Models in Finite Element Analysis of Friction Welding." BYU ScholarsArchive, 2019. https://scholarsarchive.byu.edu/etd/7686.
Full textPADUR, DIVYACHAPAN SRIDHARAN. "DEVELOPMENT AND TESTING OF AN ENHANCED PREPROCESSOR FOR CREATING 3D FINITE ELEMENT MODELS OF HIGHWAY BRIDGES AND A POST PROCESSOR FOR EFFICIENT RESULT GENERATION." University of Cincinnati / OhioLINK, 2004. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1078472870.
Full textSoudah, Majd Ali Saleh. "MODELING AND CHARACTERIZATION OF A GENERAL MULTIMECHANISM MATERIAL MODEL FOR ADVANCED ENGINEERING APPLICATIONS OF PRESSURE SENSITIVE MATERIALS." University of Akron / OhioLINK, 2021. http://rave.ohiolink.edu/etdc/view?acc_num=akron1627665516400485.
Full textReilly, Aidan. "Modelling of friction stir spot welding." Thesis, University of Cambridge, 2013. https://www.repository.cam.ac.uk/handle/1810/244946.
Full textGarapati, Sriharsha. "Analytical and Numerical Modeling of Assembly Procedures of Steel Fulcra of Bascule Bridges." Scholar Commons, 2013. http://scholarcommons.usf.edu/etd/4490.
Full textWillis, Brice Matthew. "Applying Finite Element Analysis with a Focus on Tensile Damage Modeling of Carbon Fiber Reinforced Polymer Laminates." The Ohio State University, 2013. http://rave.ohiolink.edu/etdc/view?acc_num=osu1373887044.
Full textLiu, Bochuan. "Further process understanding and prediction on selective laser melting of stainless steel 316L." Thesis, Loughborough University, 2013. https://dspace.lboro.ac.uk/2134/13550.
Full textLiu, Chih-Hsing. "A finite element based dynamic modeling method for design analysis of flexible multibody systems." Diss., Georgia Institute of Technology, 2010. http://hdl.handle.net/1853/39605.
Full textHuettner, Lauren E. "Development and Characterization of Ectromelia Virus-Moscow in the BALB/c Mouse Model for Smallpox Therapeutic and Prophylaxis Drug Efficacy Testing Under the FDA Animal Rule." The Ohio State University, 2014. http://rave.ohiolink.edu/etdc/view?acc_num=osu1397642415.
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