Dissertations / Theses on the topic 'Extinct birds – New Zealand'

The purpose of this research was to determine how predator control influences nest survival and changes in life history strategies of birds. All studies were conducted at two sites: one site had very little mammal control, while the other site is a 'mainland island' in which all introduced mammals were trapped or poisoned. Nest survival rates of introduced and native species were compared between the two sites by locating and monitoring nests of nine species. I found that mammalian predator control increased nest survival rates of both introduced and native species, but the incrase of nest survival was more pronounced in native species. The influence of predator control on the plasticity of life history strategies in introduced and native New Zealand birds was also examined. Some life history strategies (e.g. time spent incubating, frequency of visits to the nest) changed significantly in the area with predator control, while other life history traits (e.g. clutch size) did not vary between areas. I found that both introduced and native New Zealand birds changed a variety of life history traits and that the changes were likely a plastic response to the recent change in predator numbers. As it has been suggested that birds may become less responsive to mammals when predators are controlled, I tested the response of birds to a model of a feral cat. Birds in the predator control area were significantly less likely to recognise the cat model as a potential threat. This suggests the recognition of predators can be rapidly lost from a population. My research confirms that mammal control can increase nest success of native species, but reductions in predator numbers can also change a variety of life history traits and behaviours. As the removal of mammalian predators also appears to make birds less responsive to potential predators, it is important for continued mammalian control once management has begun. Otherwise, any reintroduction of predatory mammals into controlled sites would likely place such bird populations at greater risk as they would have behaviours suited to an environment with lowered nest predation risk.

Predation is the highest cause of mortality for birds and can place intense selection pressures on their behavioural traits. A number of studies have shown that some animals have innate predator recognition, while others which are predator-naïve have been unable to adapt to the introduction of exotic predators. For my thesis, I firstly studied how eight species of introduced and native birds respond to model predators at their nests. This enabled me to determine whether the native birds have been able to adapt to introduced mammalian predators and have developed recognition of them being a threat. In most species, the reaction to the stoat (Mustela erminea) (an introduced predator) was similar to that of a model morepork (Ninox novaeseelandiae) (a native predator). This suggests these species can successfully recognise introduced mammals as a risk. It also allowed me to test whether recently introduced birds have any innate recognition of snakes, which are a significant nest predator in their native ranges but do not exist in New Zealand. I found that introduced birds did not appear to have any recognition of snakes as being a threat. These losses and gains of recognition may have been caused by evolutionary changes or they may be influenced by learning and experience. Secondly, I examined how South Island robins (Petroica australis) on a predator-free island responded to predator models and compared this to the responses of robins on the mainland (where they co-occur with mammalian predators). The island birds were assumed to show the ancestral reactions to mammalian predators, while any differences in response shown by the mainland robins would indicate they had acquired these behaviours in response to increased predation risk. I found that the island robins did not appear to recognise or react to a taxidermic mount of a stoat while mainland robins did respond to the stoat, confirming that at least some native birds can develop recognition of novel predators. Finally, I compared the personalities of South Island robins on a predator-free island and on the mainland (where mammalian predators are present). I tested where individuals placed on the ‘bold-shy’ continuum by observing their willingness and speed to approach a risky situation in order to collect food. Studies have shown that average personality between populations can differ where predation risk differs. I found that the island robins were on average bolder than mainland robins. They came nearer to the observer and were faster to approach and remove a food item, while mainland robins were less likely to approach, and those that did approach took a longer time. It is likely that these differences were due to selection pressures by mammalian predators favouring shy individuals on the mainland while other pressures such as interspecific competition favours bold individuals on the island. Personality has been shown to be genetic and heritable, however, learning and experience cannot be ruled out and may also play a part in influencing how personality is expressed. Together, my results support the importance of historical and ontogenetic factors in influencing how predator recognition and personality traits are expressed.

Birds are potentially vulnerable to the toxicity of certain environmental pollutants due to limited detoxification capabilities of their liver microsomal cytochrome P450 (CYP) enzymes. In wild birds, ethoxyresorufin O-deethylation (EROD) activity, a marker of CYP1A activity in mammals and domestic chickens, has been used as a biomarker of exposure to polychlorinated biphenyls (PCBs), dibenzo-p-dioxins (PCDDs) and dibenzofurans (PCDFs). The aim of the present study was to investigate hepatic CYP activity as an indication of detoxification capacity in New Zealand birds. In addition to the use of conventional in vitro CYP activity assays, the applicability of a noninvasive CYP activity assay was tested using caffeine as the in vivo substrate. The ontogeny of liver microsomal 3-hydroxylation of quinine, a marker of human CYP3A activity, was investigated in Adelie penguins (Pygoscelis adeliae) from Ross Island, Antarctica. The results indicate that chicks (2-4 weeks old) possess a CYP3A-like isoform(s) as active as but not identical to the CYP3A-like isoform(s) in adults. Total CYP content was low at 2 weeks of age and increased rapidly and linearly approaching adult levels by 4 weeks of age implying a rapid development of CYPs other than the CYP3A-like isoform(s). The main study was conducted on adult (and some post-fledging immature) birds of two native species, the herbivorous paradise shelduck (Tadorna variegata) and the omnivorous southern black-backed gull (Larus dominicanus). Birds were shot for liver collection at three sites in the South Island of New Zealand; West Coast, Lake Waipori and Dunedin landfill, in 2001-2002. The results indicate that shelducks posssess multiple CYP isoforms that independently catalyse EROD, p-nitrophenol hydroxylation (p-NP) and erythromycin demethylation (EMD), markers of mammalian CYP1A, CYP2E and CYP3A activity, respectively. In contrast, gulls appear to possess a single isoform catalysing both EROD and p-NP but possess no isoform capable of catalysing EMD. EROD activity was high in shelducks and gulls from the landfill site, although it was not significantly associated with liver concentrations of PCBs (0.079-6.2 and 8.2-310 ng/g in shelducks and gulls, respectively), PCDD/PCDFs, toxic equivalents (TEQs) and dichlorodiphenyldichloroethylene (DDE) (0.85-317 and 44-4800 ng/g in shelducks and gulls, respectively) in either species. In shelduck livers from the landfill site, EROD was positively associated with Pb concentration but negatively associated with Hg concentration. Assessment of PCB congener patterns based on concentration ratios of individual congeners to the reference congener, 2,2�,4,4�,5,5�-hexachlorobiphenyl (IUPAC #153), indicate that the metabolism of 2,4,4�-trichlorobiphenyl (PCB#28) and 2,4,4�,5-tetrachlorobiphenyl (PCB#74) is inducible in shelducks but not in gulls. Hepatic reduced glutathione (GSH) content was higher in gulls than in shelducks suggesting greater resistance to oxidative stress in gulls. The in vivo caffeine metabolism test as a noninvasive method to determine CYP1A activity in shelducks and gulls gave a positive outcome. The test was performed by administration of a single intraperitoneal dose of caffeine (1 mg/kg body weight) followed by blood collection at 2 and 4 h after caffeine administration for determination of the serum concentration ratio of the metabolite, paraxanthine, to caffeine (PX/CA) by HPLC. In both species, the PX/CA ratio was markedly increased by pretreatment with the model CYP1A inducer, β-naphthoflavone (BNF). BNF treatment also increased EROD activity determined after death (80-fold and 20-fold compared to controls in shelducks and gulls, respectively). However, sensitivity of the PX/CA ratio approach was lower in gulls than in shelducks due presumably to the formation of unidentified caffeine metabolites in gulls. Immunoblot analysis failed to reveal increased CYP protein levels caused by BNF treatment in shelducks and gulls due to poor cross-reactivity of avian proteins with polyclonal antibodies raised against mammalian CYPs. EROD activity was also determined in livers of the piscivorous yellow-eyed penguin (Megadyptes antipodes) (1 chick, 3 post-fledging immature, 1 adult) from Otago, South Island of New Zealand, and found to be below the limit of quantitation. The adult liver contained 18.5 ng/g of total PCBs suggesting that EROD in this species is insensitive to induction. Comparison of the PCB congener pattern based on [PCBx]/[PCB#153] between the penguin and its putative source of PCB exposure, New Zealand marine fish, indicates that CYPs in yellow-eyed penguins metabolise 2,2�,5,5�-tetrachlorobiphenyl (PCB#52) and 2,2�,4,5,5�-pentachlorobiphenyl (PCB#101) as in many other avian species. The findings of this study highlight substantial species differences in CYP activity in wild birds. Whether CYP expression in New Zealand birds is genetically distinct from birds in other parts of the world may warrant further investigation.

I investigated parasitic infection and immunocompetence in populations of introduced bird species in New Zealand (NZ) that had experienced a range of population bottlenecks (11-808 individuals), and compared these parameters to non-bottlenecked conspecifics in the United Kingdom (UK). My aims were two-fold; firstly to assess if population bottlenecks are linked to increased parasite loads and/or decreased immunocompetence, and secondly, to assess at what severity of bottleneck these effects become evident. I found that ectoparasite load (chewing lice, Order: Phthiraptera, Sub-Orders: Amblycera & Ischnocera) was significantly higher in the more severely bottlenecked species in NZ than in the UK, whilst this difference became non-significant at more moderate bottlenecks. The difference was mainly driven by the Sub-Order Amblycera. The prevalence of avian malaria (Plasmodium spp.) was significantly negatively correlated to bottleneck size within NZ, after controlling for body mass. Total leucocyte and differential lymphocyte counts were elevated in the less bottlenecked species that were infected with malaria, whilst the populations at the more severe end of the bottleneck spectrum did not exhibit such a response. Furthermore, heterophil/lymphocyte (HL) ratio (a parameter used as an indicator of environmental and/or immunological stress), was significantly raised in the more bottlenecked species when compared to their UK counterparts, and this difference was correlated with the size of the bottleneck. Immunocompetence was further assessed by the experimental challenge of six introduced birds species in NZ with the mitogen phytohaemagglutinin (PHA). Immune response to PHA was significantly correlated to bottleneck size, but in the opposite direction to that predicted; immune response was greater in the more bottlenecked species. However, this may be an indication of increased investment in immunity, due to increased parasite and pathogen pressure or differential investment in varying components of the immune system. Finally, the immune response to PHA was compared in nestlings of two species that had experienced very different bottlenecks (70 vs. 653). After controlling for ectoparasitic infestation, I found no difference between the two species; however, this finding may be confounded by interspecific competition. Overall, my findings suggest that more severe population bottlenecks may result in increased susceptibility to pathogens, and impact on the immune system. This has a number of implications for the development of conservation protocols, and future avenues of research are suggested.

Thesis: S.M. in Science Writing, Massachusetts Institute of Technology, Department of Comparative Media Studies/Writing, 2019
Cataloged from PDF version of thesis.
Includes bibliographical references (pages 20-22).
In July of 2016, the New Zealand government announced plans for Predator Free 2050, the biggest predator control effort ever undertaken in the country-and perhaps the world. Predator Free 2050 is a government-sanctioned goal to eliminate rats, stoats, and possums from New Zealand. Since New Zealand has no native land mammals, its bird species are poorly adapted to withstand predation from the mammals that have been introduced since humans first arrived on the nation's shores. The country is now home to nearly 170 native bird species, most of which are declining and considered at risk or threatened after years of predation by invasive mammals. 93 of these species are endemic, found nowhere else on the planet. Predator Free 2050 builds on years of conservation efforts to reduce predator numbers and provide safe spaces for bird populations to recover, including the successful elimination of mammalian pests on islands and fenced-in sanctuaries around the country. Birds are a critical component of the nation's cultural identity and the government hopes that Predator Free 2050 will protect New Zealand's rare birds. However, it's not yet clear whether this goal is feasible and some of the methods used to wipe out pests have been controversial. The difficult decisions being made in New Zealand right now reflect the challenges and conflicts that arise around the world when wildlife protection requires significant changes and sacrifices.
by Brittany Flaherty Payne.
S.M. in Science Writing
S.M.inScienceWriting Massachusetts Institute of Technology, Department of Comparative Media Studies/Writing

The depiction of birds by artists such as Don Binney, Bill Hammond, Michael Parekowhai and Grant Whibley has served as metaphors in the conceptual systems of post-settler New Zealanders’ expression of identity. This project investigated unease in New Zealand post-settler identity and its dislocation from the past by considering works depicting native birds. Is depicting native - rather than introduced birds, an incongruous and romantic settler iconography in identity, leading to a re-telling of our place in this land at the expense of not only the rightful indigenous place of Maori, but of our own cultural becoming? By exploring the painting of birds as metaphors of New Zealand post-settler identity, the project aimed to contribute to the complex issues surrounding the entwined and entangled post-settler relationships of both the past and present. This painting project investigated these issues through the medium of oil paint, culminating in a body of artwork presented in an exhibition with an accompanying exegesis representing 20% of the work.

The age structure of populations is an important and often unresolved factor in ecology and wildlife management. Parameters like onset of reproduction and senescence, reproductive success and survival rate are tightly correlated with age. Unfortunately, age information of wild animals is not easy to obtain, especially for birds, where few anatomical markers of age exist. Longitudinal age data from birds banded as chicks are rare, particularly in long lived species. Age estimation in such species would be extremely useful as their long life span typically indicates slow population growth and potentially the need for protection and conservation. Telomere length change has been suggested as a universal marker for ageing vertebrates and potentially other animals. This method, termed molecular ageing, is based on a shortening of telomeres with each cell division. In birds, the telomere length of erythrocytes has been reported to decline with age, as the founder cells (haematopoietic stem cells) divide to renew circulating red blood cells. I measured telomere length in kakapo, the world largest parrot and four other bird species (Buller’s albatross, kea, New Zealand robin and saddleback) using telomere restriction fragment analysis (TRF) to assess the potential for molecular ageing in these species. After providing an overview of methods to measure telomere length, I describe how one of them (TRF) measures telomere length by quantifying the size distribution of terminal restriction fragments using southern blot of in-gel hybridization (Chapter 2). Although TRF is currently the ‘gold standard’ to measure telomere length, it suffers from various technical problems that can compromise precision and accuracy of telomere length estimation. In addition, there are many variations of the protocol, complicating comparisons between publications. I focused on TRF analysis using a non-radioactive probe, because it does not require special precautions associated with handling and disposing of radioactive material and therefore is more suitable for ecology laboratories that typically do not have a strong molecular biology infrastructure. However, most of my findings can be applied to both, radioactive and nonradioactive TRF variants. I tested how sample storage, choice of restriction enzyme, gel Abstract II electrophoresis and choice of hybridization buffer can influence the results. Finally, I show how image analysis (e.g. background correction, gel calibration, formula to calculate telomere length and the analysis window) can not only change the magnitude of estimated telomere length, but also their correlation to each other. Based on these findings, I present and discuss an extensive list of methodological difficulties associated with TRF and present a protocol to obtain reliable and reproducible results. Using this optimized protocol, I then measured telomere length of 68 kakapo (Chapter 3). Almost half of the current kakapo population consists of birds that were captured as adults, hence only their minimum age is known (i.e. time from when they were found +5 years to reach adulthood). Although molecular ageing might not be able to predict chronological age accurately, as calibrated with minimum age of some birds, it should be able to compare relative age between birds. Recently, the oldest kakapo (Richard Henry) was found to show signs of reproductive senescence. The age (or telomere length) difference to Richard Henry could have been used to approximate the remaining reproductive time span for other birds. Unfortunately, there was no change of telomere length with age in cross sectional and longitudinal samples. Analysis of fitness data available for kakapo yielded correlations between telomere length and fledging success, but they were weak and disappeared when the most influential bird was excluded from analysis. The heavy management and small numbers of kakapo make conclusions about fitness and telomere length difficult and highly speculative. However, telomere length of mothers and their chicks were significantly correlated, a phenomena not previously observed in any bird. To test if the lack of telomere loss with age is specific to kakapo, I measured telomere length of one of its closest relatives: the kea (Chapter 4). Like kakapo, telomere length did not show any correlation with age. I then further assessed the usefulness of molecular ageing in birds using only chicks and very old birds to estimate the maximum TL range in an additional long lived (Buller’s albatross) and two shorter lived species (NZ robin and saddleback). In these Abstract III species, telomere length was on average higher in chicks than in adults. However, age matched individuals showed high variations in telomere length, such that age dependent and independent telomere length could not be distinguished. These data and published results from other bird species, coupled with the limitations of methodology I have identified (Chapter 2), indicate that molecular ageing does not work in most (if not all) birds in its current suggested form. Another way to measure telomere length is telomere Q-PCR, a real-time PCR based method. Measurement of the same kakapo samples with TRF and Q-PCR did not result in comparable results (Chapter 4). Through experimentation I found that differences in amplification efficiency between samples lead to unreliable estimation of telomere length using telomere Q-PCR. These differences were caused by inhibitors present in the samples. The problem of differential amplification efficiency in Q-PCR, while known, is largely ignored by the scientific community. Although some methods have been suggested to correct for differing efficiency, most of these introduce more error than they eliminate. I developed and applied an assay based on internal standard oligonucleotides that was able to corrected EDTA induced quantification errors of up to 70% with high precision and accuracy (Chapter 5). The method, however, failed when tested with other inhibitors commonly found in DNA samples extracted from blood (i.e. SDS, heparin, urea and FeCl3). PCR inhibition was highly selective in the probe-polymerase system I used, inhibiting amplification of genomic DNA, but not amplification of internal oligonucleotide or plasmid standards in the same reaction. Internal standards are a key feature of most diagnostic PCR assays to identify false negatives arising from amplification inhibition. The differential response to inhibition I identified greatly compromises the accuracy of these assays. Consequently, I strongly recommend that researchers using PCR assays with internal standards should verify that the target DNA and internal standard actually respond similarly to common inhibitors.

The introduction of exotic bird species to New Zealand (NZ) from the United Kingdom (UK) over 100 years ago unintentionally created an ideal study system to examine potential changes in developmental stability due to bottleneck effects. In this study I measured fluctuating asymmetry (FA; random deviations from symmetry between bilaterally symmetrical traits) in 13 species of introduced birds in NZ. FA has been used for conservation purposes as an early warning system of increased developmental instability (DI; the inability to cope with random genetic or environmental perturbations during development). I evaluated DI using FA in several anatomical external and internal morphological traits, and compared differences in body morphology between introduced and source populations in relation to the bottleneck size. I also examined FA in nestlings in two closely related introduced species that passed through two different-sized population bottlenecks. Differences in FA in relation to bottleneck severity were only observed in external traits. FA in external traits in some NZ populations differed from their UK counterparts, but it was in the opposite direction than predicted. FA in external traits varied significantly across NZ populations of introduced species - the most severe bottlenecks species exhibited higher levels of FA than species that passed through larger bottlenecks. There were no patterns in FA and bottleneck size for skeletal traits, most likely due to differences in environmental and genetic stressors resulting in species- and characterspecific FA relationships. Nestling FA was the same for both species, despite the large difference in bottleneck size. FA did decrease over the nestling period, although not at the same rate for each trait, most likely due to the differing costs of development, functional importance, and other environmental stressors that might influence FA in each trait differently. Overall changes in body morphology occurred in four species introduced to NZ, and all species exhibited some changes in trait morphology but were not related to bottleneck size. Finally, the proportion of deformities (deviations from normal phenotype) was higher in NZ than in UK suggesting passing through a bottleneck increased the probability of abnormalities. Although the associations between FA, body morphology and bottleneck severity are complex, my results confirm that measures of morphology have the potential of being useful indicators of DI in the management of endangered species.

The New Zealand alpine zone has many fleshy-fruited plant species, but now has a relatively depauperate animal fauna. The key question is, therefore, are native alpine plants still being dispersed, if so where to and by what? I first measured fruit removal rates among nine common species using animal-exclusion cages to compare natural fruit removal by all animals, and by lizards only. Over two years, mean percent of fruit removed by early winter ranged from 25–60% among species. Speed of fruit removal also varied depending on species. Secondly, I quantified which animals disperse (or predate) seeds of those fruits, into which habitats they deposit the seeds, and the relative importance of each animal species for dispersal, in two ways. A 2-year study using fixed-area transects to monitor faecal deposition showed that introduced mammals (especially possums, rabbits, hares, sheep, pigs and hedgehogs) were abundant and widespread through alpine habitat. Of the 25,537 faeces collected, a sub-sample of 2,338 was dissected. Most mammals dispersed most (> 90%) seeds intact. However, possums (numerically the important disperser) moved most seeds into mountain beech (Nothofagus solandri) forest, while rabbits, hares, and sheep dispersed seeds mainly into open grassland dominated by thick swards of exotic grasses (e.g. Agrostis capillaris and Anthoxanthum odoratum); all are less suitable microsites. Kea (Nestor notabilis), the largest and most mobile of only three remaining native alpine bird species, are potentially useful as a long-distance seed disperser, even though parrots are typically seed predators. I found that kea are numerically more important than all other birds combined, damage very few seeds, and are probably responsible for most dispersal of seeds between mountain ranges. Finally, I investigated the effects of seed deposition microsite (shady/high-light), pulp-removal (whole/cleaned), competition (soil dug/not-dug) and predation (caged/ not) on germination, growth and survival of eight subalpine plant species. There were strong positive effects of shady microsites for seed germination and seedling survival to 3.5 years for six of the eight species. Effects of other treatments were less important and varied among species and stages. Hence, both native birds and introduced mammals are dispersing alpine seeds, but the mammals often deposit seeds in habitats unsuitable for establishment. Any evaluation of the dispersal effectiveness of frugivores must consider their contribution towards the long-term success for plant recruitment through dispersal quantity and quality.

Species translocations result in demographic bottlenecks that may produce inbreeding depression and reduce genetic variation through random sampling and drift, an outcome that could decrease long-term fitness and adaptive potential of many New Zealand species. Despite considerable evidence for costs associated with inbreeding and reduced genetic variation, some species have recovered from a small number of individuals and are thriving, perhaps via high growth rates, differential survival of heterozygous individuals or inbreeding avoidance. I examined the genetic consequences of species translocations in saddlebacks (Philesturnus carunculatus) with additional data provided for robins (Petroica australis) where possible. I first assessed whether contemporary genetic variation represented historical levels or a decline following demographic bottlenecks. I then examined whether sequential demographic bottlenecks caused sequential genetic bottlenecks and reviewed whether populations founded with a small number of birds were likely to go extinct. This analysis was followed by an investigation of two mechanisms that may maintain or reduce fitness costs, differential survival of heterozygous individuals and mate choice to avoid genetically similar individuals. Evidence from museum specimens suggests that low levels of genetic variation in contemporary saddlebacks is no different to historical genetic variation in the only source population, Big South Cape Island. An ancient founding event to Big South Cape Island is probably the cause of severe genetic bottlenecking rather than the demographic bottleneck caused by rats in the 1960s. In robins, genetic variation decreased slightly between museum and contemporary samples suggesting that recent population declines and habitat fragmentation have caused reductions in current levels of genetic variation. Serial demographic bottlenecks caused by sequential translocations of saddlebacks did not appear to decrease genetic variation. Loss of genetic variation due to random sampling was probably minimized because the low level of genetic variation remaining in the species was probably represented in the number of birds translocated to new islands. Models assessing future loss of genetic variation via drift showed that high growth rates combined with high carrying capacity on large islands would probably maintain existing genetic variation. In contrast, low carrying capacity on small islands would probably result in considerable loss of genetic variation over time. Saddleback populations on small islands may require occasional immigrants to maintain long-term genetic variation. Saddleback and robin populations established with a small number of founders did not have an increased risk of failure, suggesting that inbreeding was not substantial enough to prevent populations from growing and recovering. However, modelling showed that translocated saddleback and robin populations grow exponentially even when egg failure rates (a measure of inbreeding depression) are extremely high. Although inbreeding depression may be considerable, populations may be judged healthy simply because they show strong growth rates. Discounting the problem of inbreeding depression may be premature especially under novel circumstances such as environmental change or disease. Finally, two mechanisms proposed to avoid or delay the costs of inbreeding depression and loss of genetic variation do not appear to be important in saddlebacks or robins. Heterozygosity was not related to survivorship in saddlebacks that successfully founded new populations, and neither saddlebacks nor robins chose genetically dissimilar mates to avoid inbreeding. In conclusion, most saddleback populations should not require genetic management, although populations on small islands will probably need occasional immigrants. In robins, large, unfragmented populations should be protected where possible.

Pollination and fruit set of four species of native New Zealand flowering plant species were examined through two field seasons. Bird exclusion, pollinator exclusion, natural and supplemental pollination treatments were initiated on individuals of Cordyline australis (Cabbage tree), Phormium tenax (Flax), Kunzea ericoides (Kanuka), and Pseudopanax arboreus (Five-finger). The species differed in the self-compatibility as well as in their floral syndrome. No species showed any evidence of pollen limitation, and two species. K. ericoides and P. arboreus set fruit from more than 70% of their flowers. The response of fruit set to treatment in C. australis varied from season to season, with birds appearing important to pollination in the first but not the second field season, while birds were important in pollination across both seasons for P. tenax. K. ericoides was resilient to treatment, setting high fruit set in every treatment, compared to P. arboreus which set high fruit set when pollinators had access, but low when all pollinators were excluded. No trends relating to fruit set or PLI and self-compatibility or floral syndrome were found. That there was no evidence of pollen limitation for any species, despite variation in fruit set from some treatments, indicates that these species are performing well and not at risk of decreased population size due to pollen limitation.

Widespread anthropogenic invasions have prompted concerns that naturalized organisms could threaten biodiversity. In particular, invasive weeds can negatively affect native biota through a variety of means, including disrupting mutualisms. This thesis was designed to observe and test dispersal mutualisms in a native forest during autumn when the majority of plant species are fruiting. In this thesis I examined whether the invasive plant barberry (Berberis glaucocarpa) was influencing the behaviour of a native frugivore bellbird (Anthornis melanura) and a range of dispersal related services in a native forest, Kowhai Bush near Kaikoura. To test these 18 banded bellbirds were followed through autumn 2011. These observe bellbirds were split between control and test bird. Barberry fruit was removed from the test bird territories. I recorded whether bellbirds changed their territory sizes, foraging and daily behaviours. During 52 hours of observations, bellbirds were never observed feeding on barberry fruit. No significant changes to bellbird behaviour or territories were observed after the removal of barberry fruit. Bellbird diet overall was dominated by invertebrates (83% of foraging observations), with smaller contributions from fruit (16%, nearly all on Coprosma robusta), nectar and honeydew. Since bellbirds did not eat barberry fruit, removal of this weed is unlikely to negatively affect bellbirds during autumn. Which other bird species were dispersing barberry was recorded. I recorded 242 hours of videotape footage on 24 fruiting plants. A total of 101 foraging events were recorded of 4 different bird species: silvereyes (Zosterops lateralis) 42 visits, blackbirds (Turdus merula) 27 visits, song thrush (Turdus philomelos) 29, and starlings (Sturnus vulgaris) 3 visits. The species differed in the mean length of time they spent in plants, so the overall contribution to barberry fruit removal was 32.6% silvereyes, 24.3% blackbirds, 42.9% song thrush and 0.1% starlings. To find out the relative contribution of exotic and native birds to dispersal of fruits in Kowhai Bush, I mist-netted 221 birds of 10 species and identified any seeds in the 183 faeces they deposited. A total of 21 plant species were observed fruiting in Kowhai Bush during this time. A total of 11 different plant species were identified from 1092 seeds. Birds were further observed feeding on 3 other plant species which were not observed in faecal samples. This left 7 plants with unobserved dispersal vectors. There were likely four main dispersers, bellbirds, silvereyes, song thrush and blackbirds and five minor, brown creeper (Mohoua novaeseelandiae), tui (Prosthemadera novaeseelandiae), fantails (Rhipidura fuliginosa), dunnock (Prunella modularis) and starlings. However there was considerable variability between these bird species dispersal abilities. Introduced birds’ song thrush and blackbirds were observed dispersing naturalized plant seeds at higher than expected rates in comparison to native frugivores bellbirds and silvereyes. I also measured the gape sizes on mist netted birds and on samples of fruit from Kowhai Bush. Both silvereyes and bellbirds were found to be eating fruit larger than their gape, but despite this two native (Hedycarya arborea and Ripogonum scandens) and three exotic plants (Vitis vinifera, Taxus baccata and Crataegus monogyna) had large fruit that were probably mainly dispersed by song thrush and blackbirds. Hence, introduced birds were important seed dispersers for large fleshy fruited seeds in Kowhai Bush. Demonstrating that interactions among native and exotic flesh fruited plants and frugivores is important within forest communities.

The vegetation communities that existed in the semi-arid intermontane basins and gorges of Central Otago prior to human settlement ~750 years B.P. are poorly understood. This is because of a lack of fossil evidence and complex restructuring by anthropogenic factors, especially increased fire frequency, and more recently mammalian grazing. There is also little information regarding the effect of the lost fauna on maintaining and structuring presettlement communities, both in Central Otago and throughout the eastern South Island dryland zone. This study aims to provide a clearer understanding of the functioning of pre-settlement ecosystems in dryland Central Otago, particularly the role of the largest vertebrate herbivores, the moa (Aves: Dinornithiformes), and to explore the implications of the extinct fauna for land conservation management across New Zealand. Late Pleistocene and Holocene vegetation communities of the Central Otago lowlands were reconstructed from plant macrofossils, including seeds, leaves, and wood, excavated from rockshelter, cave, and swamp deposits throughout the region. The macrofossils represent three main vegetation types: late Pleistocene to mid (late?) Holocene basin floor wetland herb associations, Olearia-shrublands surrounding these wetlands, and mid to late Holocene open scrubland and woodland in gorges and on low altitude slopes, dominated by filiramulate Olearia, Coprosma, and Corokia, with abundant lianes (Muehlenbeckia spp. and Rubus spp.) and understorey herbs. Many native tree and shrub species that are presently widespread in the Central Otago lowlands were rare or absent prior to anthropogenic fires (e.g. Discaria toumatou, Kunzea ericoides, Leptospermum scoparium). Other tree and shrub species once present are now extinct in the region (e.g. Coprosma obconica, Plagianthus regius, Pseudopanax ferox). The loss of these indigenous woody vegetation communities was a major factor contributing to the extirpation of many small bird species, and undoubtedly also reptile and invertebrate species, from the region. Plant macrofossils from rockshelters included remains of bird nests, identifiable by desiccated feathers and eggshell amongst them. These macrofossils include the first described plant remains from the nests of moa, which were constructed from a shallow bed of twigs of locally available shrubs and lianes. Many of the twigs are 25-30 mm in length and show evidence of having been clipped by moa bills. Desiccated coprolites, mostly of moa, but also specimens attributed to Finsch�s duck (Chenonetta finschi) and red-crowned parakeet (Cyanoramphus novaezelandiae), were recovered from rockshelter excavations. Moa species associated with a sample of coprolites were identified using ancient DNA analysis, and plant macrofossils from these were examined, together with previously unexamined moa gizzard content samples excavated from mires in the eastern South Island dryland zone. The results indicate that, in addition to previously reported browsing, upland moa (Megalapteryx didinus) and heavy-footed moa (Pachyornis elephantopus) also functioned as grazers, and seeds in their coprolites are dominantly of low shrubs and ground-cover herbs. Of particular interest was the higher than expected frequency of seeds from the currently rare and threatened 'spring annual' herbs; Ceratocephala pungens and Myosurus minimus subsp. novae-zelandiae (Ranunculaceae), suggesting further research on potential ecological relationships between moa and these plants would be worthwhile. The results of this study have provided a baseline for future conservation and restoration projects in the Central Otago lowlands.

There are hundreds of thousands of fisheries-related mortalities of seabirds each year. Population trends for these species are highly influenced by changes in adult survival, their maximum growth rates are low, and little additional mortality can have a large impact on the population. As a result, many albatrosses and petrels are at risk of extinction, but limited demographic data makes it difficult to quantify the risk for many species. The goal of this research is to use population modelling tools to assess potential impacts with minimal data. In particular, the question of how much additional mortality a population can sustain is addressed when there is only knowledge of the adult survival rate, age at first breeding, and the number of breeding pairs. In this thesis, a simple decision rule designed for marine mammals is applied to albatrosses and petrels. In order to use this rule, adult survival, age at first breeding, a minimum estimate of the population size, and the maximum growth rate of the population are needed. While estimation of adult survival is well developed, work was required to calculate the other values from available data. A simple population model was developed to extrapolate from the number of breeding pairs to the total population size (given survival and age at first breeding); the effect of variable fecundity rates on the calculation of generation time and the maximum growth rate of a population was examined, relative to an estimate that only requires survival and age at first breeding; and a method for estimating the age at first breeding using capture-recapture data was suggested that accounts for study duration and emigration, in addition to capture probability. This work can help managers make better informed decisions when little is known about a population. For example, around 5,800 pairs of Gibson's albatrosses (Diomedea gibsoni) breed each year. Based on the work presented in this thesis, they may be able to sustain 1,000 - 1,200 additional mortalities per year. However, given concern about their conservation status, a mortality level below 100 - 120 is desired, and any mortality beyond that level suggests a need for more intensive management.

The choice of a place to live and reproduce is crucial for species� survival in providing them with adequate resources and shelter from predators or climatic conditions. Determining habitat suitability in endangered species is important for the success of translocation as a conservation tool. In addition, understanding mechanisms (source/sink system versus ecological traps) that drive habitat selection in translocated animals may be critical to population viability. In New Zealand, where ecosystems are highly vulnerable to extinction, habitat restoration on predator-free off-shore islands is an important recovery tool. Therefore, there is a need to understand the relationship between the establishment of the translocated populations and the characteristics of their new environment. Previous research indicated that re-introduced populations of Stewart Island robin (Petroica australis rakiura - Toutouwai) and South Island saddleback (Philesternus carunculatus carunculatus - Tieke) on Ulva Island (Stewart Island), New Zealand, showed preferences for coastal habitats that were characterized by low-lying dense vegetation and open ground cover. In this study, we further investigated territorial establishment in these two populations since re-introduction and looked at how birds utilised the landscape. I hypothesised that sites colonised soon after re-introduction were of high quality and later on, birds moved into unsuitable habitats. I defined habitat quality at a micro-scale in terms of vegetation structure, nest characteristics and food availability. I modeled bird presence and nesting success in relation to habitat components to determine factors in the environment that influenced breeding site selection and contributed to successful nesting in these two species. I discussed results in comparison to similar bird-habitat models developed for the South Island saddleback population on Motuara Island (Marlborough Sounds) and examined explanatory variables in each model. Translocated birds in the three studied populations first established territories in coastal scrub, and in the following years moved into larger coastal forest stands. Although vegetation structure was the primary variable explaining site selection in these populations, vegetation composition should still be considered important as it dictated the suitability of nesting substrate and the availability of food items. There was no evidence that first-colonised areas were more suitable habitats, and I concluded that these cases could not be used as examples of ecological traps. Instead, results suggested that with increased density robins and saddlebacks on Ulva have more recently settled in sites less suitable to nesting and foraging, thus underlying a source/sink structure. However, the sparse distribution of food items on Motuara contributed to a lack of territorial behavior and environmental effect on breeding success; therefore a source/sink system could not be confirmed in this population. I recommended that future translocation sites give preference to mixed-size stands with broadleaved species that are characterised by dense canopy below 4 m height and with suitable cavities in live trees. Lastly, due to robins� and saddlebacks� attraction to conspecifics and their territorial behavior, resources evenly distributed across the landscape could also increase their survival and reproductive success.

It is generally accepted that populations which experience severe bottlenecks have a reduction in fitness. One of the most frequently reported fitness costs is increased hatching failure in bottlenecked populations of birds. The mechanism responsible for increased hatching failure is unknown. Research on other animals suggest that reduced population numbers cause unavoidable inbreeding that in turn leads to abnormalities in the gametes. In this thesis I examine some of the possible causes for increased hatching failure in severely bottlenecked populations of introduced birds in New Zealand. I look at three traits identified as a cause for infertility or hatching failure previously and determine whether there is a link with the size of a population s bottleneck. It is possible that reduced numbers of sperm reaching the site of fertilisation is a primary cause of hatching failure. I examined the perivitelline membrane of various species of introduced birds and counted the total number of sperm present to compare to how many would be expected in non-bottlenecked species. Although there was no relationship between the size of the bottleneck and the number of sperm present, all species had lower than expected sperm counts. In many species of mammals, a reduction in the quality of sperm is attributed to inbreeding depression bought about by genetic bottlenecks. I next compared the level of sperm abnormalities, variation in midpiece size sperm, and sperm motility with the size of the bottleneck each species passed through when introduced to New Zealand. There was no significant correlation between either the variation in midpiece size or sperm motility with bottleneck size. However, there was a trend for species that passed through more severe bottlenecks to have a slightly higher level of midpiece size and lower motility. Finally, I examined whether there was a link between abnormalities in the eggshell and the size of the respective bottleneck. There was no significant change in eggshell thickness or any change in the number of pores associated bottleneck size. However, there was a decreased number of round pores in severely bottlenecked species, although the consequences of this are unknown. My findings do not directly link a single cause for increased hatching failure in bottlenecked species of birds, but they do highlight the need for monitoring of reproductive traits in endangered species that have experienced a population bottleneck.

Two main themes to the avian research presented in this thesis are, 1. Deep resolution of birds generally, and 2. Investigation of specific aspects of the New Zealand avifauna. More specifically, this thesis covers phylogeny, and predictions about palaeognaths, pigeons, pelecaniforms and passerines. Significant progress is made in resolving the basal branches of Neoaves. This thesis examines whether the six-way basal Neoavian split of Cracraft (2001) is, in principle, resolvable. New mitochondrial genomes are added to improve taxon sampling, break up long branches, and allow testing of the prior assumptions of six Neoavian groups. This research shows the six-way split is resolvable, although more work is required for specific details. From a life-history perspective, it is interesting that the two bird-of-prey groups (falcons and buzzards) are very divergent, and may not be sister groups. Molecular dating supports major diversification of at least 12 Neoavian lineages in the Late Cretaceous. Additionally, novel avian mitochondrial gene orders are investigated and a hypothesis put forward suggesting gene conversion and stable intermediate forms allows an apparently rare event (gene rearrangement) to occur multiple times within Neoaves. One of Cracraft’s six groups, informally called the ‘Conglomerati’, is particularly difficult to resolve. The pigeons (Columbiformes) lie within the ‘Conglomerati’, and this chapter examines two aspects along the continuum of pigeon evolution. Firstly the large South Pacific fruit pigeon radiation is examined with mid-length mitochondrial sequences. This clade contains a third of all pigeon species, and has been very successful in island colonisation throughout South East Asia and the Pacific. Secondly, candidates for the closest relative of pigeons are tested using analysis of whole mitochondrial genomes. Highest support was found for the grouping of sandgrouse and pigeon, although they are clearly very divergent. Also within the ‘Conglomerati’ is the traditional order Pelecaniformes, and their close allies the Ciconiiformes. These orders (the P&C) are part of an adaptive radiation of seabird water-carnivores, including loons, penguins, petrels and albatrosses. This group is separate from the large shorebird water-carnivore group; although both appear to have begun radiating abut 70 million years ago. The tropicbird represents a separate, convergent life history and is not part of the Pelecaniformes, nor within the larger seabird water-carnivore group. Resolution of the basal phylogeny of oscine passerines is important for interpreting the radiation of this group out of the Australasian region. Many endemic New Zealand oscine passerines belong to ‘basal corvid’ lineages, but have not previously been investigated with mitochondrial DNA. This chapter shows that many ‘basal corvid’ lineages are actually ‘basal passerine’ lineages, and there is a discrepancy between nuclear Rag-1 phylogenies (the most commonly used gene in passerine phylogenetics) and other phylogenies, including mitochondrial, that requires further investigation. Taken as a whole, this thesis adds significantly to our understanding of the evolution of birds, and provides a foundation for future research, not only of phylogenetic relationships, but also of avian life history, long-term niche stability and macroevolution.

Inbreeding depression is one of the factors that can increase the risk of extinction of small populations, and therefore understanding its effects is currently an important issue in conservation biology. Until recently, few studies on inbreeding depression were carried out in wild populations. These recent studies have highlighted the variability in detecting inbreeding depression among natural populations and the multitude of factors that can influence its expression. Many of the factors affecting inbreeding depression in wild populations remain largely unexplored and most of the recent studies in this area have tended to focus on incidents of inbreeding in populations with a history of large population size. The aim of this study is to investigate the relative importance inbreeding depression has had on individual fitness parameters in a population of New Zealand's Stewart Island robins Petroica australis rakiura introduced to Ulva Island. This island population has historically gone through several population bottlenecks. Four main factors that potentially influence the rate of inbreeding and the extent of inbreeding depression, were investigated: environmental variability, life history stage, genetic load and dispersal. Generalized Linear Mixed Modelling was first used to determine how weather affected nest survival. Weather effects were then incorporated into models containing demographic factors to control for environmental variability, and finally parental, maternal and paternal inbreeding co-efficients (=f) were added to models to determine the relative importance of inbreeding depression. Interactions between inbreeding depression and environmental factors were explored. Three different life history stages were compared to determine the differences in inbreeding depression at each stage as well as cumulative effects over time. The genetic load of the population was estimated using lethal equivalents allowing for standardised comparison of inbreeding depression with other species. The likelihood of inbreeding in the population was also explored by investigating the factors affecting dispersal patterns and evaluating evidence for inbreeding avoidance. Inbreeding depression was found to be mild in the robin population. Weather did not have strong effects on nest survival or interactions with inbreeding. Female age was the only factor interacting with inbreeding, with younger inbred females experiencing significantly reduced offspring juvenile survival. Parental and paternal f did not significantly affect brood survival at any life history stage, however, maternal f showed significant effects on nest juvenile survival with the strongest effect occurring when survival was examined cumulatively over all life history stages. The Stewart Island robin had a relatively low lethal equivalent value compared to the closely related North Island robin and other avian species. This difference was associated with the Stewart Island robin having a low genetic load, most likely due to historical genetic purging during periods of population bottleneck. The Ulva Island robin population did not appear to be avoiding inbreeding through dispersal. Dispersal distance was most strongly influenced by the location of the natal nest of the dispersing offspring. In conclusion, the genetic history of the population was likely to have had the strongest impact on the severity of inbreeding depression in the Ulva Island robin population. The results of the thesis highlight the need to examine a number of factors to be able to explain variability in inbreeding depression among populations.

The cause(s) of the worldwide Late Pleistocene megafaunal extinctions and their effects on modern ecosystems has been debated by the scientific community since the widespread discovery of megafaunal fossils in the nineteenth century. New Zealand is a good case study because of its geographical isolation, resulting in the late colonisation of New Zealand by Polynesians in about 1280 AD. The subsequent extinction of New Zealand’s megafauna, including the moa (Aves: Dinornithiformes), took place at a time of relative climatic stability, and is thought to be due to over-hunting and habitat destruction. The aim of this thesis, using moa as a case study, is to conduct a detailed examination of a megafaunal palaeoecosystem prior to the introduction of humans. In this thesis, Chapter One reviews the literature concerning the causes and consequences of the Late Pleistocene megafaunal extinctions; the evolution of moa; New Zealand ecology; ancient DNA and its applications; and coalescent theory. The aims and structure of the thesis is then outlined. To investigate the New Zealand palaeoecosystem using moa, it is first necessary to examine the quality of the recent moa fossil record. This is especially important because specimens used in temporal population demographic analyses need to be interpreted in the correct depositional context and timeframe. There have been a number of theories proposed to explain the deposition mechanisms of swamp deposits, or, more correctly, miring bone deposits, including large floods and stampeding during wildfires. Chapter Two discusses the taphonomy of three different New Zealand swamp deposits that were reconstructed using a novel ARC-GIS methodology specifically designed for this study. It concludes that the reconstructions are consistent with noncatastrophic periodic miring of individual moa. To gain an insight into the faunal composition of North Canterbury, New Zealand in the Late Glacial period (10,000-14,000 years ago), and how moa responded to climate and habitat change, I led a team that re-excavated the Late Glacial Glencrieff miring bone deposit and reconstructed the palaeofauna. The analysis presented in Chapter Three shows the Glencrieff fauna was a characteristic glacial fauna, despite extensive climatic and habitat change during this period. A new opportunity to examine moa palaeoecology has been presented by the discovery of moa coprolites. Previous reconstructions of moa diet have concluded that moa were predominantly browsers of trees and shrubs. There is considerable debate over the role of moa in the evolution of ‘anti-browsing’ growth characteristics found in many of the New Zealand flora. Chapter Four discusses the analysis of newly discovered coprolite deposits and subsequent reconstructions of moa diet. The results challenge historical perceptions of moa diet, showing there was considerable overlap in dietary preferences between different moa species, despite differences in skull and bill morphology, with the majority of plants eaten being less than 30 cm in height. In addition, plants with ‘anti-browsing’ growth characteristics were found in the coprolites, consistent with the moa anti-browsing hypothesis. To further study moa ecology I led a genetic investigation of moa appearance using moa feathers. The current knowledge of moa plumage is limited because the majority of moa feathers are recovered as isolated specimens in caves and rockshelters, and cannot be related to specific species. In Chapter Five, ancient DNA (aDNA) is extracted from isolated sub-fossil feathers and used to identify species. Digital techniques used to reconstruct moa plumage indicate that four species of moa were characterised by either a plain brown slightly streaky plumage or a speckled plumage, with considerable overlap in plumage between species. The overlap may be due to convergent evolution of feather colour for camouflage against aerial predators as observed in many other New Zealand bird species, for example kiwi (Apteryx spp.), kakapo (Strigops habroptilus), kea (Nestor notabilis), takahe (Porphyrio hochstetteri) and weka (Gallirallus australis). In Chapters Six and Seven I analyse how moa species have responded to changes in climate and habitat since the Last Glacial Maximum (LGM; 29-19 Kya in New Zealand). Ancient DNA and fossil records are used to examine the responses of the extinct crested moa (Pachyornis australis) and heavy-footed moa (Pachyornis elephantopus) to climate and habitat change. I show that crested moa tracked changes in its sub-alpine habitat since the LGM due to warming climate with little effect on population size. Concurrently, climate and habitat change promoted phylogeographic structuring and allometric size variation within heavy-footed moa. Importantly, while climate and habitat change had an effect on moa, it did not cause their ultimate extinction. Chapter Eight further investigates the temporal population demographic methods used in Chapters Six and Seven. I discuss how sampling biases common to most aDNA datasets affect the robustness of the Bayesian Skyline Plot (BSP), a commonly used analytical method for inferring the past population demographic history of species or populations. The analyses indicate that sampling biases produced large variations in the BSP of Beringian Steppe Bison and Pachyornis moa, when the datasets were re-examined and re-sampled to simulate sampling biases. Importantly, this reveals the BSP may not accurately reflect the true demographic history of a species or population when analysing contemporary genetic data alone. Finally, the thesis concludes with a discussion drawing together, and interpreting the outcomes and significance of the research and argues that the results of this research represent a significant addition to our present knowledge of the pre-human New Zealand megafaunal palaeoecosystem.
Thesis (Ph.D.) -- University of Adelaide, School of Earth and Environmental Sciences, 2010

This thesis investigated the potential for establishing a self-sustaining population of an endangered forest bird, the hihi (Notiomystis cincta) on the New Zealand mainland, and the factors that may influence this. Previous reintroduction attempts, mostly to offshore islands, have met with limited success, or been dependent on ongoing management. However, future conservation measures for hihi aim to reintroduce populations to the mature forest found on the mainland that hihi may be best adapted to. Such reintroductions come with new challenges for hihi conservation. The first reintroduction of hihi to this environment occurred with two releases of hihi from Tiritiri Matangi Island to “Ark in the Park”, a predator-controlled site in Auckland’s Waitakere Ranges, in February and June 2007. This study reports on the survival and dispersal of hihi following these releases, using radio transmitters for post-release monitoring, and also gives information on the vulnerability of hihi to predators, and foraging behaviour at this site. In terms of survivorship, birds released in February had higher apparent survival than those released in June, but this may have been due to higher dispersal in June. Birds released under a “delayed-release” strategy had lower long-term survival than those released immediately. There was some evidence that transmitters may have had an impact on dispersal and behaviour, but there was no evidence that transmitters reduced survival. Individuals in better condition were more likely to disperse further in the first week postrelease, but it was not possible to examine the relationship between condition and survival. Clutch size and hatching date were the two most influential factors found to affect individual condition in juvenile hihi from Tiritiri Matangi Island. It may be possible to use this information when selecting individuals for future translocations, but the impact on the source population should first be investigated, as well as the relationship between condition and survival. The failure of previous hihi reintroductions has in part been attributed to a lack of diversity of natural food in regenerating forest, and all successfully reintroduced populations to date rely on supplementary food. However, little is known about how the diet of hihi changes at different life stages, between the sexes, by season and in different habitats. In this study, such information was provided for the first time for hihi using stable isotope analysis. I found evidence for dietary shifts across different life stages (nestling, fledgling, juvenile and adult), between the sexes, and in different habitats (regenerating forest vs mature forest), and I showed that diet may be one of the proximate factors influencing individual condition.

Nestling mortality in a reintroduced population of the endangered and endemic hihi/stitchbird (Notiomystis cincta) was investigated over one breeding season (2008-09) at Zealandia – Karori Sanctuary, New Zealand, to determine whether disease impacted on nestling survival. High rates of both hatching failure (56%) and nestling mortality (39%) in the first clutch made this the least successful breeding season since translocation in 2005. Overall 34% of eggs survived to fledge, compared to 52% and 58% in 2005-06 and 2006-07 respectively. Samples collected from 34 live and 25 dead nestlings were screened for evidence of disease. Bacterial and fungal pathogens were isolated from gastrointestinal swabs but there was no evidence of coccidia or other intestinal parasites in faecal samples. There was no evidence of significant abnormalities in the blood collected from hihi prior to fledging in the haematological parameters tested, and all blood samples were negative for malarial parasites. Tropical fowl mites (Ornithonyssus bursa) were found on nestlings and recovered from nest material in very small numbers. Sixty percent of nestling mortality occurred during the first 7 days of life, most often caused by starvation (16%) or poor pulmonary aeration (20%), and death was associated with seasonally low minimum daily temperatures below 11oC. Two older nestlings that died suffered from aspergillosis and an unidentified haemoparasite respectively. Seven nestlings (28%) aged 6-19 days died as a consequence of ventriculitis due to traumatic penetration by insect remnants identified as bee or wasp stings (Hymenoptera). The resulting granulomatous lesions were found in the gizzard mucosa, muscle layers and ventricular or intestinal serosa, and were associated with bacterial and/or yeast secondary infection. It was concluded that hihi may lack the evolutionary adaptations to safely consume introduced bees (Apis mellifera) and wasps (Vespula germanica, V. vulgaris) that are attracted to the feeding stations used to support reintroduced hihi populations. Histopathological examination showed candidiasis contributed to the deaths of four nestlings and Candida albicans was isolated from the gastrointestinal swabs of 13 live nestlings from four nest sites, eight of which survived to fledge. The potential of all pathogens may be increased by any cause of temporary or permanent immunosuppression and, in this establishing population, the majority of nestling deaths were associated with environmental conditions (temperature) and ecological factors (introduced prey). It is suggested that ongoing monitoring should include use of temperature data-loggers in hihi nest boxes, health screening of live nestlings, necropsy examination of dead birds, and spore counts to determine environmental levels of Aspergillus. Nest box insulation and/or heating could reduce the incidence of hypothermia in nestlings. A review of the carbohydrate provisioning protocols may reduce bee/wasp numbers and minimise the effect of Candida albicans at this site.

Improvements in breeding success are needed for conservation of endangered birds such as the New Zealand kakapo. A potential method to stimulate breeding is treatment with exogenous hormones. Hormone treatment is used in captive breeding programmes for endangered mammals but reliable techniques are not available for birds. Gonadotropin releasing hormone (GnRH), the principal hormone controlling reproduction, has been used to induce ovarian growth and ovulation in seasonally anoestrous mammals. The goal of the research in this thesis was to determine the potential of GnRH for hormone treatment in birds. The Japanese quail (Coturnix coturnix japonica) was used in the current research. Female quail held outdoors with male quail and with access to nesting materials and nest sites showed clear seasonal patterns in the width of the cloacal opening (indicative of oviduct development) and FSH concentrations, whilst LH concentrations were low during winter and increased during spring and summer. Prolactin concentrations were elevated in birds incubating eggs in nests and birds caring for young. Photoperiodically induced gonadal growth and regression were described in detail for male and female quail under controlled conditions. Testicular and ovarian growth was preceded by increased LH and FSH concentrations and accompanied by increased gonadal steroid concentrations. Administration of various types of GnRH stimulated luteinising hormone (LH) secretion in sexually regressed female Japanese quail. LH responses to cGnRH-II were greater than those to cGnRH-I. Low doses of buserelin stimulated similar LH responses to cGnRH-II, whilst high doses of buserelin and D-Lys6Trp7Tyr8-GnRH induced sustained LH secretion. Single daily injections of various doses of cGnRH-II, buserelin or D-Lys6Trp7Tyr8-GnRH in saline or polyvinylpyrrolidone (PVP) did not induce elevated baseline LH or stimulate ovarian growth. Repeated injections of D-Lys6Trp7Tyr8-GnRH did not increase LH concentrations over a short-term period. Continuous infusion of D-Lys6Trp7Tyr8-GnRH by osmotic mini-pump severely blunted the LH response and did not stimulate ovarian growth. Future studies using quail exposed to marginally stimulatory photoperiods will offer the opportunities to determine the effects of GnRH in birds under conditions which mimic photoperiod changes during the breeding season. Further studies on the potential development of a hormone treatment programme will continue to offer a promising future for endangered avian species including the New Zealand kakapo.