Academic literature on the topic 'Eubacterium'

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Journal articles on the topic "Eubacterium"

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Hill, G. B., O. M. Ayers, and A. P. Kohan. "Characteristics and sites of infection of Eubacterium nodatum, Eubacterium timidum, Eubacterium brachy, and other asaccharolytic eubacteria." Journal of Clinical Microbiology 25, no. 8 (1987): 1540–45. http://dx.doi.org/10.1128/jcm.25.8.1540-1545.1987.

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Wells, James E., and Phillip B. Hylemon. "Identification and Characterization of a Bile Acid 7α-Dehydroxylation Operon in Clostridium sp. Strain TO-931, a Highly Active 7α-Dehydroxylating Strain Isolated from Human Feces." Applied and Environmental Microbiology 66, no. 3 (March 1, 2000): 1107–13. http://dx.doi.org/10.1128/aem.66.3.1107-1113.2000.

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ABSTRACT Clostridium sp. strain TO-931 can rapidly convert the primary bile acid cholic acid to a potentially toxic compound, deoxycholic acid. Mixed oligonucleotide probes were used to isolate a gene fragment encoding a putative bile acid transporter fromClostridium sp. strain TO-931. This DNA fragment had 60% nucleotide sequence identity to a known bile acid transporter gene fromEubacterium sp. strain VPI 12708, another bile acid-7α-dehydroxylating intestinal bacterium. The DNA (9.15 kb) surrounding the transporter gene was cloned fromClostridium sp. strain TO-931 and sequenced. Within this larger DNA fragment was a 7.9-kb region, containing six successive open reading frames (ORFs), that was encoded by a single 8.1-kb transcript, as determined by Northern blot analysis. The gene arrangement and DNA sequence of the Clostridium sp. strain TO-931 operon are similar to those of a Eubacterium sp. strain VPI 12708 bile acid-inducible operon containing nine ORFs. Several genes in theEubacterium sp. strain VPI 12708 operon have been shown to encode products required for bile acid 7α-dehydroxylation. InClostridium sp. strain TO-931, genes potentially encoding bile acid-coenzyme A (CoA) ligase, 3α-hydroxysteroid dehydrogenase, bile acid 7α-dehydratase, bile acid-CoA hydrolase, and a bile acid transporter were similar in size and exhibited amino acid homology to similar gene products from Eubacterium sp. strain VPI 12708 (encoded by baiB, baiA, baiE,baiF, and baiG, respectively). However, no genes similar to Eubacterium sp. strain VPI 12708biaH or baiI were found in theClostridium sp. strain TO-931 bai operon, and the two putative Eubacterium sp. strain VPI 12708 genes,baiC and baiD, were arranged in one continuous ORF in Clostridium sp. strain TO-931. Intergene regions showed no significant DNA sequence similarity, but primer extension analysis identified a region 115 bp upstream from the first ORF that exhibited 58% identity to a bai operator/promoter region identified in Eubacterium sp. strain VPI 12708. These results indicate that the gene organization, gene product amino acid sequences, and promoters of the bile acid-inducible operons ofClostridium sp. strain TO-931 and Eubacteriumsp. strain VPI 12708 are highly conserved.
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Weizenegger, Michael, Mathias Neumann, Erko Stackebrandt, Norbert Weiss, and Wolfgang Ludwig. "Eubacterium alactolyticum Phylogenetically Groups with Eubacterium limosum, Acetobacterium woodii and Clostridium barkeri." Systematic and Applied Microbiology 15, no. 1 (February 1992): 32–36. http://dx.doi.org/10.1016/s0723-2020(11)80134-7.

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Wade, William G., Julia Downes, Mark A. Munson, and Andrew J. Weightman. "Eubacterium minutum is an earlier synonym of Eubacterium tardum and has priority." International Journal of Systematic and Evolutionary Microbiology 49, no. 4 (October 1, 1999): 1939–41. http://dx.doi.org/10.1099/00207713-49-4-1939.

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Aminov, Rustam I., Alan W. Walker, Sylvia H. Duncan, Hermie J. M. Harmsen, Gjalt W. Welling, and Harry J. Flint. "Molecular Diversity, Cultivation, and Improved Detection by Fluorescent In Situ Hybridization of a Dominant Group of Human Gut Bacteria Related to Roseburia spp. or Eubacterium rectale." Applied and Environmental Microbiology 72, no. 9 (September 2006): 6371–76. http://dx.doi.org/10.1128/aem.00701-06.

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ABSTRACT Phylogenetic analysis was used to compare 16S rRNA sequences from 19 cultured human gut strains of Roseburia and Eubacterium rectale with 356 related sequences derived from clone libraries. The cultured strains were found to represent five of the six phylotypes identified. A new oligonucleotide probe, Rrec584, and the previous group probe Rint623, when used in conjunction with a new helper oligonucleotide, each recognized an average of 7% of bacteria detected by the eubacterial probe Eub338 in feces from 10 healthy volunteers. Most of the diversity within this important group of butyrate-producing gut bacteria can apparently be retrieved through cultivation.
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Sungkanuparph, Somnuek, Sirintorn Chansirikarnjana, and Malai Vorachit. "Eubacterium Bacteremia and Colon Cancer." Scandinavian Journal of Infectious Diseases 34, no. 12 (January 2002): 941–43. http://dx.doi.org/10.1080/0036554021000026946.

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NAKAZAWA, F., and E. HOSHINO. "Genetic Relationships among Eubacterium Species." International Journal of Systematic Bacteriology 44, no. 4 (October 1, 1994): 787–90. http://dx.doi.org/10.1099/00207713-44-4-787.

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Arias, Manuel, Ángel Sesar, and Ignacio Requena. "Meningoencefalitis recidivante por Eubacterium lentum." Medicina Clínica 127, no. 15 (October 2006): 598–99. http://dx.doi.org/10.1157/13094007.

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Altman, Eleonora, Jean-Robert Brisson, Paul Messner, and Uwe B. Sleytr. "Structure of the glycan chain from the surface layer glycoprotein of Bacillus alvei CCM 2051." Biochemistry and Cell Biology 69, no. 1 (January 1, 1991): 72–78. http://dx.doi.org/10.1139/o91-010.

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The cell surface of the mesophilic eubacterium Bacillus alvei CCM 2051 is covered by an oblique arranged surface layer glycoprotein. The subunits revealed by sodium dodecyl sulfate – polyacrylamide gel electrophoresis were distinct bands of molecular masses 140 000, 128 000, and 127 000. Proteolytic degradation of the purified S-layer glycoprotein yielded a single glycopeptide fraction with an apparent molecular mass of ca. 25 000. Methylation analysis in conjunction with two-dimensional nuclear magnetic resonance experiments at 500 MHz established the branched trisaccharide[Formula: see text]as the repeating unit for this glycan chain.Key words: surface layer, eubacteria, glycoprotein, nuclear magnetic resonance, structure.
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Wang, Xinquan, Xiangyuan He, Shoujun Yang, Xiaomin An, Wenrui Chang, and Dongcai Liang. "Structural Basis for Thermostability of β-Glycosidase from the Thermophilic Eubacterium Thermus nonproteolyticus HG102." Journal of Bacteriology 185, no. 14 (July 15, 2003): 4248–55. http://dx.doi.org/10.1128/jb.185.14.4248-4255.2003.

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ABSTRACT The three-dimensional structure of a thermostable β-glycosidase (GlyTn) from the thermophilic eubacterium Thermus nonproteolyticus HG102 was determined at a resolution of 2.4 Å. The core of the structure adopts the (βα)8 barrel fold. The sequence alignments and the positions of the two Glu residues in the active center indicate that GlyTn belongs to the glycosyl hydrolases of retaining family 1. We have analyzed the structural features of GlyTn related to the thermostability and compared its structure with those of other mesophilic glycosidases from plants, eubacteria, and hyperthermophilic enzymes from archaea. Several possible features contributing to the thermostability of GlyTn were elucidated.
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Dissertations / Theses on the topic "Eubacterium"

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Gursinsky, Torsten. "Selenoprotein-codierende mRNAs aus Eubacterium acidaminophilum Erkennung durch den Selenocystein-spezifischen Elongationsfaktor SelB und Translation in Escherichia coli /." [S.l. : s.n.], 2002. http://deposit.ddb.de/cgi-bin/dokserv?idn=967124549.

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Chang, I. S. "Carbon monoxide fermentation by Eubacterium limosum KIST612." Thesis, Swansea University, 2000. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.636225.

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Carbon monoxide (CO)-utilising acetogens were enriched and the isolate KIST612 was selected for its abilities to tolerate high CO and acetate concentration. The isolate KIST612 was identified as Eubacterium limosum based on the morphological and biochemical characteristics. E. limosum KIST612 produced acetate and butyrate from CO. The optimum temperature and pH for the growth and organic acids formations were 37°C and 7.0, respectively. This bacterium was cultivated on phosphate-buffered basal medium (PBBM) with CO as the sole energy and carbon source. In a batch fermentation using a serum vial, E. limosum KIST612 grew at the initial growth rate of 0.15-0.16 h-1 with Ks for dissolved CO of 0.14 mM. When sufficient CO was supplied using a bubble column reactor, the maximum growth rate of E. limosum KIST612 was 0.23 h-1. The bacterial growth rate was reduced in the presence of acetate. A membrane reactor was employed to allow cell recycling continuous sparging CO fermentation to organic acid product removal. The reactor system used was a bubble column type reactor, and the overall volumetric CO mass transfer coefficient (kLa) of the reactor was 72 h-1. When the dry cell weight was 5.25 g/L in the reactor, the bacterial cell concentration did not increase at a CO partial pressure lower than 74 kPa, though CO was consumed with organic acid produced. At this stage, supply of CO mass transfer rate was lower than CO requirement to support maximum cell growth, but higher than that to maintain culture. Since CO was supplied higher than maintenance requirement under atmospheric CO pressure, bacterial cell concentration increased to 9.5 g/L.
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Gräntzdörffer, Andrea. "Formiat-Stoffwechsel in Eubacterium acidaminophilum molekulare und biochemische Charakterisierung der Wolfram- und Selen-haltigen Formiat-Dehydrogenasen sowie einer Eisen-Hydrogenase /." [S.l. : s.n.], 2000. http://deposit.ddb.de/cgi-bin/dokserv?idn=961933194.

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Kohlstock, Ulf-Martin. "Protein C von Eubacterium acidaminophilum Sequenzanalyse und Funktion der Thiole von GrdD für die Freisetzung von Acetylphosphat /." [S.l. : s.n.], 2001. http://deposit.ddb.de/cgi-bin/dokserv?idn=963213261.

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Parther, Tina. "Die Peroxidase-Aktivität Selenocystein-haltiger Proteine des strikt anaeroben Bakteriums Eubacterium acidaminophilum." [S.l. : s.n.], 2003. http://deposit.ddb.de/cgi-bin/dokserv?idn=96943233X.

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Mariotto, Christian. "Production d'acides organiques à partir de substrats monocarbones par Eubacterium limosum." Grenoble 2 : ANRT, 1988. http://catalogue.bnf.fr/ark:/12148/cb37615744b.

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Mariotto, Christian. "Production d'acides organiques a partir de substrats monocarbones par eubacterium limosum." Toulouse, INSA, 1988. http://www.theses.fr/1988ISAT0023.

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Le metabolisme de la fermentation du methanol par eubacterium limosum est regule par la quantite d'equivalents reducteurs produits par la dissimilation du methanol. L'optimisation de la production d'acide butynique passe par ce flux de dissimilation. L'utilisation de la fermentation avec ajouts de substrats permet d'obtenir un titre maximal en acide butynique, et celle du couplage ultrafiltration-fermentation procure les valeurs maximales de la productivite en acide butynique
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Le, Bloas Pascale. "Etude des limitations et des régulations du métabolisme central de Eubacterium limosum." Toulouse, INSA, 1992. http://www.theses.fr/1992ISAT0042.

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Dans le cadre d'une etude physiologique sur e. Limosum, une procedure de dosage enzymatique/fluorimetrique des intermediaires glycolytiques et des coenzymes a ete elaboree: la methode est fiable et facilement adaptable a d'autres metabolites et microorganismes. Ces dosages ont ete appliques a des cultures discontinues de e. Limosum sur glucose et sur methanol/co#2. Les resultats ont conduit a des informations nouvelles sur les limitations et les regulations du metabolisme central de la bacterie: il apparait une correlation logique entre la concentration des enzymes et le sens ou la valeur des flux qu'elles doivent supporter. D'autre part, le pool de certains intermediaires glycolytiques, decrits comme effecteurs des enzymes irreversibles de la voie de emp, varie d'un substrat a l'autre dans le sens attendu d'une activation des enzymes glycolytiques sur glucose, d'une limitation sur methanol et vice versa pour les enzymes gluconeogeniques. Lors des cultures sur glucose, une limitation de la synthese de la formiate deshydrogenase peut etre a l'origine des limitations precoces de la fixation/reduction du co#2 puis se la pyruvate oxydoreductase, du flux glycolytique et de la croissance. Avec le methanol/co#2 comme substrat, une limitation precoce de l'utilisation du methanol est observee. Elle est concomitante d'un ralentissement des biosyntheses, attribuable a une disponibilite reduite en acetyl-coa et en atp. La limitation energetique, qui se repercute sur le flux gluconeogenique, se renforce et accentue la limitation de la croissance au-dela d'une concentration de butyrate reconnue comme inhibitrice chez e. Limosum
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Toyoda, Atsushi. "Studies on the Adhesion of the Major Rumen Cellulolytic Bacterium, Eubacterium cellulosolvens 5, to Cellulose." Kyoto University, 2003. http://hdl.handle.net/2433/148329.

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Haddock, John David. "Biochemistry and genetics of the pathway for the anaerobic degradation of aromatic compounds by Eubacterium oxidoreducens." Diss., Virginia Tech, 1990. http://hdl.handle.net/10919/39756.

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The biochemical pathway for the anaerobic degradation of gallate, pyrogallol and phloroglucinol by Eubacterium oxidoreducens was investigated. Phloroglucinol reductase was purified 90-fold, from the soluble fraction of cell extract, to electrophoretic homogeneity. The enzyme was an α₂ homodimer with a native Mr of 78,000, did not contain metals or cofactors and was specific for phloroglucinol and NADPH with a Km of 800 μM and 6.7 μM respectively at pH 6.8. The Km for phloroglucinol decreased with increasing pH. The enzyme catalyzed reaction was reversible and the equilibrium constant was 9.6. Dihydroresorcinol was a competitive inhibitor of the reverse reaction (Ki = 756 μM). Dihydrophloroglucinol produced in cell extract with H₂ as the reductant was identical to the compound produced by sodium borohydride reduction of phloroglucinol as shown by 1H NMR spectroscopy. The ¹³C NMR spectrum was consistent with the structural assignment of dihydrophloroglucinol. The mechanism of the proposed enzymatically catalyzed reaction is proposed to involve transfer of a hydride equivalent from NADPH to the carbonyl carbon of the phloroglucinol dianion. Mutant strains of E. oxidoreducens that showed no gallate decarboxylase or dihydrophloroglucinol hydrolase activity were isolated after mutagenesis with ethylmethane sulfonate and emichment with ampicillin. The decarboxylase deficient mutants were unable to grow on gallate while pyrogallol and phloroglucinol supported growth. The hydrolase deficient mutants were unable to grow on any aromatic substrates and converted gallate to pyrogallol and dihydrophloroglucinol. The conversion of gallate to non-aromatic intermediates by cell extract of the wild-type stain was dependent on the presence of 1,2,3,5-benzenetetrol for the conversion of pyrogallol to phloroglucinol and on formate for the reduction of phloroglucinol to dihydrophloroglucinol. Transhydroxylase activity involved in the conversion of pyrogallol to phloroglucinol was induced by growth on aromatic substrates. The formate dehydrogenase was located in the soluble fraction of cell extract, and activity was protected from oxygen inactivation by sodium azide. The Km for formate and NADP was 290 μM and 140 μM respectively at pH 7.5. The pH optimum for activity was 7.5 and maximum activity was observed at a temperature of 50°C.
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Books on the topic "Eubacterium"

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Borkar, Sunita, ed. Bioprospects of Coastal Eubacteria. Cham: Springer International Publishing, 2015. http://dx.doi.org/10.1007/978-3-319-12910-5.

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Goel, Usha. Characterization of bacteriophages of halophilic eubacteria. Ottawa: National Library of Canada, 1993.

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Metcalfe, Mark Andrew. Development of a solution-hybridization assay for eubacterial 16S ribosomal RNA, employing oligomers of DNA or 2'-O-allyl RNA as sequence-specific probes. Birmingham: University of Birmingham, 1995.

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Borkar, Sunita. Bioprospects of Coastal Eubacteria: Ecosystems of Goa. Springer, 2016.

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Borkar, Sunita. Bioprospects of Coastal Eubacteria: Ecosystems of Goa. Springer, 2015.

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Helms, Doris R. Diversity: Kingdoms Eubacteria, Archaebacteria, and Protista: Separate from Biology in the Laboratory 3e. W. H. Freeman, 1997.

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Book chapters on the topic "Eubacterium"

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Verhulst, A., F. Symons, and H. Eyssen. "Classification of the Genus Eubacterium." In Frontiers in Microbiology, 249–50. Dordrecht: Springer Netherlands, 1987. http://dx.doi.org/10.1007/978-94-009-3353-8_28.

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Wade, William G. "The Genus Eubacterium and Related Genera." In The Prokaryotes, 823–35. New York, NY: Springer US, 2006. http://dx.doi.org/10.1007/0-387-30744-3_28.

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Prado, A., M. S. da Costa, J. Laynez, and V. M. C. Madeira. "Physical Properties of Membrane Lipids Isolated from a Thermophilic Eubacterium (Thermus sp.)." In Advances in Experimental Medicine and Biology, 47–58. New York, NY: Springer US, 1988. http://dx.doi.org/10.1007/978-1-4684-7908-9_5.

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Mallonee, Darrell H., and Phillip B. Hylemon. "Molecular Biology of Bile Acid 7α-Dehydroxylation in an Intestinal Eubacterium Species." In Brock/Springer Series in Contemporary Bioscience, 618–28. New York, NY: Springer New York, 1993. http://dx.doi.org/10.1007/978-1-4615-7087-5_45.

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Freudenberg, W., K. Hormann, M. Rieth, and J. R. Andreesen. "Involvement of a Selenoprotein in Glycine, Sarcosine, and Betaine Reduction by Eubacterium acidaminophilum." In Selenium in Biology and Medicine, 25–28. Berlin, Heidelberg: Springer Berlin Heidelberg, 1989. http://dx.doi.org/10.1007/978-3-642-74421-1_5.

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Seegers, Jos F. M. L., Thi Phuong Nam Bui, and Willem M. de Vos. "Remarkable Metabolic Versatility of the Commensal Bacteria Eubacterium hallii and Intestinimonas butyriciproducens: Potential Next-Generation Therapeutic Microbes." In Microorganisms for Sustainability, 139–51. Singapore: Springer Singapore, 2021. http://dx.doi.org/10.1007/978-981-16-0223-8_5.

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Gooch, Jan W. "Eubacteria." In Encyclopedic Dictionary of Polymers, 891. New York, NY: Springer New York, 2011. http://dx.doi.org/10.1007/978-1-4419-6247-8_13702.

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Andreesen, J. R., K. Hormann, K. Granderath, M. Meyer, and D. Dietrichs. "Eubacterium Acidaminophilum, an Organism Able to Interact in Interspecies H-Transfer Reactions or to Transfer Electrons to Different Terminal Reductase Systems." In Microbiology and Biochemistry of Strict Anaerobes Involved in Interspecies Hydrogen Transfer, 355–57. Boston, MA: Springer US, 1990. http://dx.doi.org/10.1007/978-1-4613-0613-9_32.

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Hori, Hiroyuki, Ryota Yamagami, and Chie Tomikawa. "Regulation of Protein Synthesis via the Network Between Modified Nucleotides in tRNA and tRNA Modification Enzymes in Thermus thermophilus, a Thermophilic Eubacterium." In Modified Nucleic Acids in Biology and Medicine, 73–89. Cham: Springer International Publishing, 2016. http://dx.doi.org/10.1007/978-3-319-34175-0_4.

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Stanier, Roger Y., John L. Ingraham, Mark L. Wheelis, and Page R. Painter. "The Photosynthetic Eubacteria." In General Microbiology, 344–82. London: Macmillan Education UK, 1986. http://dx.doi.org/10.1007/978-1-349-08754-9_15.

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Conference papers on the topic "Eubacterium"

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Ajizah, Aulia, and Khairunnida Rahma. "The Development of A Handout on Eubacteria Concept for High School." In 5th SEA-DR (South East Asia Development Research) International Conference 2017 (SEADRIC 2017). Paris, France: Atlantis Press, 2017. http://dx.doi.org/10.2991/seadric-17.2017.23.

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Reports on the topic "Eubacterium"

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Knoll, Kenneth M. Genetic Methods for Rapid Gene Localization in Hyperthermophilic Eubacteria. Fort Belvoir, VA: Defense Technical Information Center, August 1993. http://dx.doi.org/10.21236/ada276062.

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