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Journal articles on the topic 'Epigenetic memory'

Author: Grafiati
Published: 9 March 2023

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1

Rusk, Nicole. "Synthetic epigenetic memory." Nature Methods 14, no. 8 (August 2017): 764. http://dx.doi.org/10.1038/nmeth.4382.

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Rusk, Nicole. "Creating epigenetic memory." Nature Methods 16, no. 2 (January 30, 2019): 141. http://dx.doi.org/10.1038/s41592-019-0312-3.

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3

D’Urso, Agustina, and Jason H. Brickner. "Epigenetic transcriptional memory." Current Genetics 63, no. 3 (November 2, 2016): 435–39. http://dx.doi.org/10.1007/s00294-016-0661-8.

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4

Mladenov, Velimir, Vasileios Fotopoulos, Eirini Kaiserli, Erna Karalija, Stephane Maury, Miroslav Baranek, Na'ama Segal, et al. "Deciphering the Epigenetic Alphabet Involved in Transgenerational Stress Memory in Crops." International Journal of Molecular Sciences 22, no. 13 (July 1, 2021): 7118. http://dx.doi.org/10.3390/ijms22137118.

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Although epigenetic modifications have been intensely investigated over the last decade due to their role in crop adaptation to rapid climate change, it is unclear which epigenetic changes are heritable and therefore transmitted to their progeny. The identification of epigenetic marks that are transmitted to the next generations is of primary importance for their use in breeding and for the development of new cultivars with a broad-spectrum of tolerance/resistance to abiotic and biotic stresses. In this review, we discuss general aspects of plant responses to environmental stresses and provide an overview of recent findings on the role of transgenerational epigenetic modifications in crops. In addition, we take the opportunity to describe the aims of EPI-CATCH, an international COST action consortium composed by researchers from 28 countries. The aim of this COST action launched in 2020 is: (1) to define standardized pipelines and methods used in the study of epigenetic mechanisms in plants, (2) update, share, and exchange findings in epigenetic responses to environmental stresses in plants, (3) develop new concepts and frontiers in plant epigenetics and epigenomics, (4) enhance dissemination, communication, and transfer of knowledge in plant epigenetics and epigenomics.
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5

Lubin, Farah D., Swati Gupta, R. Ryley Parrish, Nicola M. Grissom, and Robin L. Davis. "Epigenetic Mechanisms." Neuroscientist 17, no. 6 (April 1, 2011): 616–32. http://dx.doi.org/10.1177/1073858410386967.

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Recent advances in chromatin biology have identified a role for epigenetic mechanisms in the regulation of neuronal gene expression changes, a necessary process for proper synaptic plasticity and memory formation. Experimental evidence for dynamic chromatin remodeling influencing gene transcription in postmitotic neurons grew from initial reports describing posttranslational modifications of histones, including phosphorylation and acetylation occurring in various brain regions during memory consolidation. An accumulation of recent studies, however, has also highlighted the importance of other epigenetic modifications, such as DNA methylation and histone methylation, as playing a role in memory formation. This present review examines learning-induced gene transcription by chromatin remodeling underlying long-lasting changes in neurons, with direct implications for the study of epigenetic mechanisms in long-term memory formation and behavior. Furthermore, the study of epigenetic gene regulation, in conjunction with transcription factor activation, can provide complementary lines of evidence to further understanding transcriptional mechanisms subserving memory storage.
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6

Roth, Tania L., Eric D. Roth, and J. David Sweatt. "Epigenetic regulation of genes in learning and memory." Essays in Biochemistry 48 (September 20, 2010): 263–74. http://dx.doi.org/10.1042/bse0480263.

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Rapid advances in the field of epigenetics are revealing a new way to understand how we can form and store strong memories of significant events in our lives. Epigenetic modifications of chromatin, namely the post-translational modifications of nuclear proteins and covalent modification of DNA that regulate gene activity in the CNS (central nervous system), continue to be recognized for their pivotal role in synaptic plasticity and memory formation. At the same time, studies are correlating aberrant epigenetic regulation of gene activity with cognitive dysfunction prevalent in CNS disorders and disease. Epigenetic research, then, offers not only a novel approach to understanding the molecular transcriptional mechanisms underlying experience-induced changes in neural function and behaviour, but potential therapeutic treatments aimed at alleviating cognitive dysfunction. In this chapter, we discuss data regarding epigenetic marking of genes in adult learning and memory formation and impairment thereof, as well as data showcasing the promise for manipulating the epigenome in restoring memory capacity.
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7

Hörmanseder, Eva. "Epigenetic memory in reprogramming." Current Opinion in Genetics & Development 70 (October 2021): 24–31. http://dx.doi.org/10.1016/j.gde.2021.04.007.

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8

Iwasaki, Mayumi, and Jerzy Paszkowski. "Epigenetic memory in plants." EMBO Journal 33, no. 18 (August 7, 2014): 1987–98. http://dx.doi.org/10.15252/embj.201488883.

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9

Dean, Caroline. "What holds epigenetic memory?" Nature Reviews Molecular Cell Biology 18, no. 3 (March 2017): 140. http://dx.doi.org/10.1038/nrm.2017.15.

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10

D’Urso, Agustina, and Jason H. Brickner. "Mechanisms of epigenetic memory." Trends in Genetics 30, no. 6 (June 2014): 230–36. http://dx.doi.org/10.1016/j.tig.2014.04.004.

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11

Gavery, Mackenzie R., and Steven B. Roberts. "Epigenetic considerations in aquaculture." PeerJ 5 (December 7, 2017): e4147. http://dx.doi.org/10.7717/peerj.4147.

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Epigenetics has attracted considerable attention with respect to its potential value in many areas of agricultural production, particularly under conditions where the environment can be manipulated or natural variation exists. Here we introduce key concepts and definitions of epigenetic mechanisms, including DNA methylation, histone modifications and non-coding RNA, review the current understanding of epigenetics in both fish and shellfish, and propose key areas of aquaculture where epigenetics could be applied. The first key area is environmental manipulation, where the intention is to induce an ‘epigenetic memory’ either within or between generations to produce a desired phenotype. The second key area is epigenetic selection, which, alone or combined with genetic selection, may increase the reliability of producing animals with desired phenotypes. Based on aspects of life history and husbandry practices in aquaculture species, the application of epigenetic knowledge could significantly affect the productivity and sustainability of aquaculture practices. Conversely, clarifying the role of epigenetic mechanisms in aquaculture species may upend traditional assumptions about selection practices. Ultimately, there are still many unanswered questions regarding how epigenetic mechanisms might be leveraged in aquaculture.
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12

Perrone, Lorena, Carmela Matrone, and Lalit P. Singh. "Epigenetic Modifications and Potential New Treatment Targets in Diabetic Retinopathy." Journal of Ophthalmology 2014 (2014): 1–10. http://dx.doi.org/10.1155/2014/789120.

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Retinopathy is a debilitating vascular complication of diabetes. As with other diabetic complications, diabetic retinopathy (DR) is characterized by the metabolic memory, which has been observed both in DR patients and in DR animal models. Evidences have provided that after a period of poor glucose control insulin or diabetes drug treatment fails to prevent the development and progression of DR even when good glycemic control is reinstituted (glucose normalization), suggesting a metabolic memory phenomenon. Recent studies also underline the role of epigenetic chromatin modifications as mediators of the metabolic memory. Indeed, epigenetic changes may lead to stable modification of gene expression, participating in DR pathogenesis. Moreover, increasing evidences suggest that environmental factors such as chronic hyperglycemia are implicated DR progression and may also affect the epigenetic state. Here we review recent findings demonstrating the key role of epigenetics in the progression of DR. Further elucidation of epigenetic mechanisms, acting both at the cis- and trans-chromatin structural elements, will yield new insights into the pathogenesis of DR and will open the way for the discovery of novel therapeutic targets to prevent DR progression.
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13

Levenson, Jonathan M., and J. David Sweatt. "Epigenetic mechanisms in memory formation." Nature Reviews Neuroscience 6, no. 2 (January 14, 2005): 108–18. http://dx.doi.org/10.1038/nrn1604.

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14

Mimura, Imari. "Epigenetic memory in kidney diseases." Kidney International 89, no. 2 (February 2016): 274–77. http://dx.doi.org/10.1016/j.kint.2015.12.026.

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15

Logie, Colin, and Hendrik G. Stunnenberg. "Epigenetic memory: A macrophage perspective." Seminars in Immunology 28, no. 4 (August 2016): 359–67. http://dx.doi.org/10.1016/j.smim.2016.06.003.

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16

El-Osta, A. "Glycemic memory and epigenetic persistence." PharmaNutrition 2, no. 3 (July 2014): 83–84. http://dx.doi.org/10.1016/j.phanu.2013.11.026.

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17

Cencioni, Chiara, Francesco Spallotta, Simona Greco, Fabio Martelli, Andreas M. Zeiher, and Carlo Gaetano. "Epigenetic mechanisms of hyperglycemic memory." International Journal of Biochemistry & Cell Biology 51 (June 2014): 155–58. http://dx.doi.org/10.1016/j.biocel.2014.04.014.

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18

Ray, L. B. "Quantitative analysis of epigenetic memory." Science 351, no. 6274 (February 11, 2016): 676–78. http://dx.doi.org/10.1126/science.351.6274.676-p.

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19

Siebel, Andrew L., Ana Z. Fernandez, and Assam El-Osta. "Glycemic memory associated epigenetic changes." Biochemical Pharmacology 80, no. 12 (December 2010): 1853–59. http://dx.doi.org/10.1016/j.bcp.2010.06.005.

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20

Fischer, A. "Epigenetic memory: the Lamarckian brain." EMBO Journal 33, no. 9 (April 9, 2014): 945–67. http://dx.doi.org/10.1002/embj.201387637.

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21

., Shierly, and Chandra Wirawan. "The role of epigenetic modifications in Alzheimer’s disease." International Journal of Research in Medical Sciences 9, no. 1 (December 28, 2020): 294. http://dx.doi.org/10.18203/2320-6012.ijrms20205860.

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Aging is the primary risk factor for various neurodegenerative diseases, including Alzheimer’s disease (AD), which is the most frequent form of Dementia. AD is progressive neurodegenerative disease with abnormal protein production, inflammation and memory deterioration. The main clinical manifestations of this illness are cognitive disturbance and memory deficit. Abnormal of beta-amyloid (Aβ), neurofibrillary tangles (NFTs) and tau deposition are the most common findings pathology in this disease. Recent studies indicate that epigenetic modifications strongly correlate in developing these pathology and disease progression. The hallmarks of epigenetic modifications are DNA (deoxyribonucleic acid) methylation, histone modifications, chromatin remodeling and ncRNA (non-coding ribonucleic acid) expressions. This review aims to explain the potential mechanisms of epigenetic modifications associate with this disease. The general conclusion of this review is that epigenetic modifications play an ultimate role in AD and there are potential biomarkers of AD and future novel treatment of AD based on epigenetics.
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22

Zediak, Valerie P., E. John Wherry, and Shelley L. Berger. "The contribution of epigenetic memory to immunologic memory." Current Opinion in Genetics & Development 21, no. 2 (April 2011): 154–59. http://dx.doi.org/10.1016/j.gde.2011.01.016.

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23

Elsherbiny, Adel, and Gergana Dobreva. "Epigenetic memory of cell fate commitment." Current Opinion in Cell Biology 69 (April 2021): 80–87. http://dx.doi.org/10.1016/j.ceb.2020.12.014.

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24

Michieletto, Davide, Michael Chiang, Davide Colì, Argyris Papantonis, Enzo Orlandini, Peter R. Cook, and Davide Marenduzzo. "Shaping epigenetic memory via genomic bookmarking." Nucleic Acids Research 46, no. 1 (November 28, 2017): 83–93. http://dx.doi.org/10.1093/nar/gkx1200.

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25

Bird, A. "DNA methylation patterns and epigenetic memory." Genes & Development 16, no. 1 (January 1, 2002): 6–21. http://dx.doi.org/10.1101/gad.947102.

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26

Chookajorn, Thanat, Ron Dzikowski, Matthias Frank, Felomena Li, Alisha Z. Jiwani, Daniel L. Hartl, and Kirk W. Deitsch. "Epigenetic memory at malaria virulence genes." Proceedings of the National Academy of Sciences 104, no. 3 (January 5, 2007): 899–902. http://dx.doi.org/10.1073/pnas.0609084103.

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27

Stewart-Morgan, Kathleen R., Nataliya Petryk, and Anja Groth. "Chromatin replication and epigenetic cell memory." Nature Cell Biology 22, no. 4 (March 30, 2020): 361–71. http://dx.doi.org/10.1038/s41556-020-0487-y.

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28

Fortress, Ashley M., and Karyn M. Frick. "Epigenetic regulation of estrogen-dependent memory." Frontiers in Neuroendocrinology 35, no. 4 (October 2014): 530–49. http://dx.doi.org/10.1016/j.yfrne.2014.05.001.

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29

Sweatt, J. D. "[PL1]: Epigenetic mechanisms in memory formation." International Journal of Developmental Neuroscience 28, no. 8 (November 2010): 639. http://dx.doi.org/10.1016/j.ijdevneu.2010.07.003.

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30

Turgut-Kara, Neslihan, Burcu Arikan, and Haluk Celik. "Epigenetic memory and priming in plants." Genetica 148, no. 2 (April 2020): 47–54. http://dx.doi.org/10.1007/s10709-020-00093-4.

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31

Burgess, Darren J. "H3K27 methylation in transgenerational epigenetic memory." Nature Reviews Genetics 15, no. 11 (October 17, 2014): 703. http://dx.doi.org/10.1038/nrg3848.

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32

Zaina, Silvio, and Gertrud Lund. "Epigenetic memory, MBD2 and the endothelium." Current Opinion in Lipidology 23, no. 1 (February 2012): 78–79. http://dx.doi.org/10.1097/mol.0b013e32834f429d.

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33

Minton, Kirsty. "HSC function determined by epigenetic memory." Nature Reviews Immunology 17, no. 1 (December 12, 2016): 5. http://dx.doi.org/10.1038/nri.2016.140.

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34

Minton, Kirsty. "HSC function determined by epigenetic memory." Nature Reviews Molecular Cell Biology 18, no. 1 (December 7, 2016): 1. http://dx.doi.org/10.1038/nrm.2016.161.

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35

Blaze, Jennifer, and Tania L. Roth. "Epigenetic mechanisms in learning and memory." Wiley Interdisciplinary Reviews: Cognitive Science 4, no. 1 (November 8, 2012): 105–15. http://dx.doi.org/10.1002/wcs.1205.

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36

Alvarez, Rosa M., and Kenneth B. Margulies. "Epigenetic Memory and Cardiac Cell Therapy." Journal of the American College of Cardiology 64, no. 5 (August 2014): 449–50. http://dx.doi.org/10.1016/j.jacc.2014.05.021.

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37

Fisher, Amanda G., Michael P. H. Stumpf, and Matthias Merkenschlager. "Reconciling Epigenetic Memory and Transcriptional Responsiveness." Cell Systems 4, no. 4 (April 2017): 373–74. http://dx.doi.org/10.1016/j.cels.2017.04.005.

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38

Tuesta, Luis M., and Yi Zhang. "Mechanisms of epigenetic memory and addiction." EMBO Journal 33, no. 10 (April 28, 2014): 1091–103. http://dx.doi.org/10.1002/embj.201488106.

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39

Mangum, Kevin D., and Katherine A. Gallagher. "Obesity confers macrophage memory." Science 379, no. 6627 (January 6, 2023): 28–29. http://dx.doi.org/10.1126/science.adf6582.

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40

Maity, Sabyasachi, Kayla Farrell, Shaghayegh Navabpour, Sareesh Naduvil Narayanan, and Timothy J. Jarome. "Epigenetic Mechanisms in Memory and Cognitive Decline Associated with Aging and Alzheimer’s Disease." International Journal of Molecular Sciences 22, no. 22 (November 13, 2021): 12280. http://dx.doi.org/10.3390/ijms222212280.

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Epigenetic mechanisms, which include DNA methylation, a variety of post-translational modifications of histone proteins (acetylation, phosphorylation, methylation, ubiquitination, sumoylation, serotonylation, dopaminylation), chromatin remodeling enzymes, and long non-coding RNAs, are robust regulators of activity-dependent changes in gene transcription. In the brain, many of these epigenetic modifications have been widely implicated in synaptic plasticity and memory formation. Dysregulation of epigenetic mechanisms has been reported in the aged brain and is associated with or contributes to memory decline across the lifespan. Furthermore, alterations in the epigenome have been reported in neurodegenerative disorders, including Alzheimer’s disease. Here, we review the diverse types of epigenetic modifications and their role in activity- and learning-dependent synaptic plasticity. We then discuss how these mechanisms become dysregulated across the lifespan and contribute to memory loss with age and in Alzheimer’s disease. Collectively, the evidence reviewed here strongly supports a role for diverse epigenetic mechanisms in memory formation, aging, and neurodegeneration in the brain.
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41

Sultan, Faraz A., and Jeremy J. Day. "Epigenetic mechanisms in memory and synaptic function." Epigenomics 3, no. 2 (April 2011): 157–81. http://dx.doi.org/10.2217/epi.11.6.

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42

Lau, Colleen M., Gabriela M. Wiedemann, and Joseph C. Sun. "Epigenetic regulation of natural killer cell memory*." Immunological Reviews 305, no. 1 (December 14, 2021): 90–110. http://dx.doi.org/10.1111/imr.13031.

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43

Benayoun, Bérénice A., and Anne Brunet. "Epigenetic memory of longevity in Caenorhabditis elegans." Worm 1, no. 1 (January 2012): 77–81. http://dx.doi.org/10.4161/worm.19157.

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44

Gurusamy, Narasimman, Vijayakumar Sukumaran, Adel Alhazzani, Abdullah S. Shatoor, Kenichi Watanabe, and Mikiyasu Shirai. "Complications of diabetes: an unsolicited epigenetic memory." Diabesity 1, no. 1 (January 15, 2015): 3. http://dx.doi.org/10.15562/diabesity.2015.6.

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45

Jayaraman, Sundararajan. "Epigenetic Mechanisms of Metabolic Memory in Diabetes." Circulation Research 110, no. 8 (April 13, 2012): 1039–41. http://dx.doi.org/10.1161/circresaha.112.268375.

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46

Kim, K., A. Doi, B. Wen, K. Ng, R. Zhao, P. Cahan, J. Kim, et al. "Epigenetic memory in induced pluripotent stem cells." Nature 467, no. 7313 (July 19, 2010): 285–90. http://dx.doi.org/10.1038/nature09342.

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47

Lacoste, Nicolas, and Geneviève Almouzni. "Epigenetic memory: H3.3 steps in the groove." Nature Cell Biology 10, no. 1 (January 2008): 7–9. http://dx.doi.org/10.1038/ncb0108-7.

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48

Ng, Ray K., and J. B. Gurdon. "Maintenance of Epigenetic Memory in Cloned Embryos." Cell Cycle 4, no. 6 (April 13, 2005): 760–63. http://dx.doi.org/10.4161/cc.4.6.1743.

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49

Zovkic, I. B., M. C. Guzman-Karlsson, and J. D. Sweatt. "Epigenetic regulation of memory formation and maintenance." Learning & Memory 20, no. 2 (January 15, 2013): 61–74. http://dx.doi.org/10.1101/lm.026575.112.

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50

Reul, Johannes M. H. M., and Yalini Chandramohan. "Epigenetic mechanisms in stress-related memory formation." Psychoneuroendocrinology 32 (August 2007): S21—S25. http://dx.doi.org/10.1016/j.psyneuen.2007.03.016.

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