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Books on the topic 'Environmental genomic'

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Published: 7 July 2024

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1

Dick, Gregory. Genomic Approaches in Earth and Environmental Sciences. Chichester, UK: John Wiley & Sons, Ltd, 2018. http://dx.doi.org/10.1002/9781118708231.

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2

Pool, Robert. Environmental contamination, biotechnology, and the law: The impact of emerging genomic information. Washington, D.C: National Academy Press, 2001.

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3

Greated, Alicia. The IncP-9 plasmid group: Characterisation of genomic sequences and development of tools for environmental monitoring. Birmingham: University of Birmingham, 2000.

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4

Martin, C. Cristofre, and C. Cristofre Martin, eds. Environmental Genomics. Totowa, NJ: Humana Press, 2008. http://dx.doi.org/10.1007/978-1-59745-548-0.

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5

Cristofre, Martin C., ed. Environmental genomics. Totowa, N.J: Humana, 2007.

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6

Bridge, Paul, David Smith, and Erko Stackebrandt, eds. Trends in the systematics of bacteria and fungi. Wallingford: CABI, 2021. http://dx.doi.org/10.1079/9781789244984.0000.

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Abstract There are fundamental differences between the current levels of genomic and proteomic knowledge for bacteria and fungi. With multiple growth forms and over 100,000 known species, the fungi probably present a more complex situation, but genomic studies are hindered by the lack of reliable reference data for many species. As activities such as environmental sampling, and genomic and proteomic profiling, become more important in extending our understanding of ecosystems, there is an increasing imperative for researchers in microbial systematics to develop the methods and concepts required to interpret the information being generated. This volume presents a collection of chapters that provide some insights into how current methods and resources are being used in microbial systematics, together with some thoughts and suggestions about how both methodologies and concepts may develop in the future.
7

Martin, Francis, and Stephane Uroz, eds. Microbial Environmental Genomics (MEG). New York, NY: Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-3369-3.

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8

Martin, Francis, and Stephane Uroz, eds. Microbial Environmental Genomics (MEG). New York, NY: Springer US, 2023. http://dx.doi.org/10.1007/978-1-0716-2871-3.

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9

Cellura, A. Raymond. The genomic environment and niche-experience. Abbeville, SC: Cedar Springs Press, 2004.

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10

Cellura, A. Raymond. The genomic environment and niche-experience. Abbeville, SC: Cedar Springs Press, 2005.

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11

Yunitto, Kagaku Gijutsu Shinkō Kikō Kenkyū Kaihatsu Senryaku Sentā Raifu Saiensu. Kankyō tekiōgata sakumotsu no genomu sekkei gijutsu: Senryaku inishiatibu = Technology for genomic design of environmentally adapted crops : strategic initiative. Tōkyō: Kagaku Gijutsu Shinkō Kikō Kenkyū Kaihatsu Senryaku Sentā Raifu Saiensu Yunitto, 2010.

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12

Straalen, N. M. van. An introduction to ecological genomics. 2nd ed. Oxford: Oxford University Press, 2012.

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13

Madsen, Eugene L. Environmental microbiology. Malden, MA: Blackwell Pub., 2008.

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14

Ayyanathan, Kasirajan. Specific gene expression and epigenetics: The interplay between the genome and its environment. Toronto: Apple Academic Press, 2014.

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15

Takami, Hideto. Genomic diversity of Bacillus-related species. New York: Nova Science, 2008.

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16

Li, Robert W. Metagenomics and its applications in agriculture, biomedicine, and environmental studies. Hauppauge, N.Y: Nova Science Publisher's, 2011.

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17

1959-, Ankley Gerald T., and SETAC (Society), eds. Genomics in regulatory ecotoxicology: Applications and challenges. Boca Raton: CRC Press, 2008.

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18

United States. Dept. of Energy. Office of Science., United States. Dept. of Energy. Office of Biological and Environmental Research., United States. Dept. of Energy. Office of Advanced Scientific Computing Research., and Oak Ridge National Laboratory. Human Genome Management Information System., eds. DOE genomics: GTL roadmap : systems biology for energy and environment. Germantown, MD: U.S. Dept. of Energy, Office of Science, 2005.

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19

Symposium on Environment and Genome (1991 Calcutta, India). Proceedings of Symposium on Environment and Genome, XVIth Annual Conference of Environmental Mutagen Society of India, 16th-18th January 1991, Saha Institute of Nuclear Physics, Calcutta & University of Calcutta, Calcutta. Calcutta: EMSI, 1991.

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20

Tyukavin, Aleksandr, Andrey Vasil'ev, Nikolay Arseniev, Nalal'ya Karelina, Aleksey Davydov, Ekaterina Nikitina, Alsu Sayfitdinova, et al. Physiology with the basics of anatomy. ru: INFRA-M Academic Publishing LLC., 2023. http://dx.doi.org/10.12737/1904329.

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The textbook presents modern ideas about the structure and functions of the human body in accordance with the curriculum of the discipline "Physiology with the basics of anatomy". The morphofunctional features of living systems and basic physiological processes that manifest themselves at the level of cells, tissues, organs and the body as a whole are highlighted. The main genomic and epigenomic mechanisms of regulation of intracellular processes, as well as molecular mechanisms of adaptation of cells to the action of environmental factors are presented. The structure and precision neurohumoral mechanisms of functioning of internal organ systems are described. The reproductive function is considered, the main stages of individual human development are shown. The main systems mediating immunity, oxygen and circulatory regimes, metabolism and energy, as well as the water-electrolyte balance of the body are described. Information about the role of histohematic barriers in maintaining homeostasis of the human internal environment is presented. The principles of the organization and functioning of the central nervous system are highlighted, the basics of perception and psychophysiological relationships, the architectonics of the behavioral act, human biorhythms, as well as neurophysiological mechanisms of pain are considered. Meets the requirements of the federal state educational standards of higher education of the latest generation. For students of the specialty of pharmaceutical universities and faculties studying in the specialty 33.05.01 "Pharmacy". It can be used as additional educational literature by students of medical universities.
21

Farrell, Anthony Peter. Encyclopedia of fish physiology: From genome to environment. London: Academic Press, an imprint of Elsevier, 2011.

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22

Betts, Kellyn, ed. The Promise of Genome Editing Tools to Advance Environmental Health Research. Washington, D.C.: National Academies Press, 2018. http://dx.doi.org/10.17226/25136.

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23

Conley, Dalton. The equal environments assumption in the post-genomic age: Using misclassified twins to estimate bias in heritability models. Cambridge, MA: National Bureau of Economic Research, 2011.

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24

Karsten, Zengler, ed. Accessing uncultivated microorganisms: From the environment to organisms and genomes and back. Washington, D.C: ASM Press, 2008.

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25

United States. Department of Energy. Health and Environmental Research Advisory Committee. Subcommittee on Human Genome. Report on the human genome initiative for the Office of Health and Environmental Research. Washington, DC]: [D.O.E.], 1987.

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26

Gordon, Richard. The Science of Algal Fuels: Phycology, Geology, Biophotonics, Genomics and Nanotechnology. Dordrecht: Springer Netherlands, 2012.

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27

Cooper, J. I. Viruses and the environment. 2nd ed. London ; New York: Chapman and Hall, 1995.

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28

Genomic Responses to Environmental Stress. Elsevier, 1990. http://dx.doi.org/10.1016/s0065-2660(08)x6047-x.

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29

Dick, Gregory. Genomic Approaches in Earth and Environmental Sciences. Wiley & Sons, Incorporated, John, 2018.

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30

Dick, Gregory. Genomic Approaches in Earth and Environmental Sciences. Wiley & Sons, Incorporated, John, 2018.

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31

Dick, Gregory. Genomic Approaches in Earth and Environmental Sciences. Wiley & Sons, Incorporated, John, 2018.

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32

Dick, Gregory. Genomic Approaches in Earth and Environmental Sciences. Wiley & Sons, Limited, John, 2014.

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33

Scandalios, John G. Advances in Genetics: Genomic Responses to Environmental Stress (Advances in Genetics). Academic Press, 1990.

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34

Taberlet, Pierre, Aurélie Bonin, Lucie Zinger, and Eric Coissac. Introduction to environmental DNA (eDNA). Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0001.

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Chapter “Introduction to environmental DNA (eDNA)” defines the central concepts of this book. Environmental DNA (eDNA) corresponds to a mixture of genomic DNA from many different organisms found in an environmental sample such as water, soil, or feces. DNA metabarcoding can be defined as the simultaneous DNA-based identification of many taxa found in the same eDNA extract. It is usually based on the analysis of a metabarcode (i.e., a short and taxonomically informative DNA region). Metagenomics refers to the assembly and functional analysis of the different genomes found in an environmental sample, while metatranscriptomics examines gene expression and regulation at the sampling time based on the set of RNAs extracted from such a sample. Chapter also presents a brief history of eDNA, highlights the different steps of an eDNA study, and gives an overview of the different eDNA methods implemented in ecological research or biodiversity management.
35

Pool, Robert, Division on Earth and Life Studies, National Research Council, and Board on Life Sciences. Environmental Contamination, Biotechnology, and the Law : The Impact of Emerging Genomic Information: Summary of a Forum. National Academies Press, 2001.

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36

Pool, Robert, Division on Earth and Life Studies, National Research Council, and Board on Life Sciences. Environmental Contamination, Biotechnology, and the Law : The Impact of Emerging Genomic Information: Summary of a Forum. National Academies Press, 2001.

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37

Pool, Robert, Division on Earth and Life Studies, National Research Council, and Board on Life Sciences. Environmental Contamination, Biotechnology, and the Law : The Impact of Emerging Genomic Information: Summary of a Forum. National Academies Press, 2001.

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38

Kirchman, David L. Genomes and meta-omics for microbes. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0005.

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The sequencing of entire genomes of microbes grown in pure cultures is now routine. The sequence data from cultivated microbes have provided insights into these microbes and their uncultivated relatives. Sequencing studies have found that bacterial genomes range from 0.18 Mb (intracellular symbiont) to 13 Mb (a soil bacterium), whereas genomes of eukaryotes are much bigger. Genomes from eukaryotes and prokaryotes are organized quite differently. While bacteria and their small genomes often grow faster than eukaryotes, there is no correlation between genome size and growth rates among the bacteria examined so far. Genomic studies have also highlighted the importance of genes exchanged (“horizontal gene transfer”) between organisms, seemingly unrelated, as defined by rRNA gene sequences. Microbial ecologists use metagenomics to sequence all microbes in a community. This approach has revealed unsuspected physiological processes in microbes, such as the occurrence of a light-driven proton pump, rhodopsin, in bacteria (dubbed proteorhodopsin). Genomes from single cells isolated by flow cytometry have also provided insights about the ecophysiology of both bacteria and protists. Oligotrophic bacteria have streamlined genomes, which are usually small but with a high fraction of genomic material devoted to protein-encoding genes, and few transcriptional control mechanisms. The study of all transcripts from a natural community, metatranscriptomics, has been informative about the response of eukaryotes as well as bacteria to changing environmental conditions.
39

Beaver, Kevin M., Eric J. Connolly, Joseph L. Nedelec, and Joseph A. Schwartz. On the Genetic and Genomic Basis of Aggression, Violence, and Antisocial Behavior. Edited by Rosemary L. Hopcroft. Oxford University Press, 2018. http://dx.doi.org/10.1093/oxfordhb/9780190299323.013.15.

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There is a great deal of interest in examining the genetic and environmental architecture to aggression, violence, and antisocial behaviors. This interest has resulted in hundreds of studies being published that estimate genetic and environmental effects on antisocial phenotypes. The results generated from these studies have been remarkably consistent and have contributed greatly to the knowledge base on the etiology of antisocial behavior. This chapter reviews the research on the genetic basis to antisocial phenotypes by presenting the results related to the heritability of antisocial phenotypes. It also discusses some of the molecular genetic association studies as well as genome-wide association studies that focus on the development of antisocial behaviors. In doing so, it also reviews findings related to gene–environment interactions. The chapter concludes by discussing some of the ways in which these findings could be used for intervention and prevention programs.
40

Martin, C. Cristofre. Environmental Genomics. Humana Press, 2007.

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41

Martin, C. Cristofre. Environmental Genomics. Humana Press, 2010.

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42

Microbial Environmental Genomics. Humana, 2018.

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43

Insight on Environmental Genomics. Elsevier, 2016. http://dx.doi.org/10.1016/c2015-0-06337-7.

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44

Genomics and Environmental Regulation. Johns Hopkins University Press, 2008. http://dx.doi.org/10.1353/book.3343.

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45

Uroz, Stéphane, and Francis Martin. Microbial Environmental Genomics (MEG). Springer New York, 2016.

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46

Uroz, Stéphane, and Francis Martin. Microbial Environmental Genomics (MEG). Springer, 2023.

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47

Frankham, Richard, Jonathan D. Ballou, Katherine Ralls, Mark D. B. Eldridge, Michele R. Dudash, Charles B. Fenster, Robert C. Lacy, and Paul Sunnucks. Loss of genetic diversity reduces ability to adapt. Oxford University Press, 2017. http://dx.doi.org/10.1093/oso/9780198783398.003.0004.

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Environmental change is a ubiquitous feature of the conditions faced by species, so they must either evolve, move to avoid threats, or perish. Species require genetic diversity to evolve to cope with environmental change through natural selection (adaptive evolution). The ability of populations to undergo adaptive evolution depends upon the strength of selection, genetic diversity, effective population size, mutation rates and number of generations. Loss of genetic diversity in small populations reduces their ability to evolve to cope with environmental change, thus increasing their extinction risk. Adaptive evolution in the short to medium term predominantly utilizes pre-existing genetic diversity, but new mutations make increasing contributions in later generations. Evolutionary potential can be estimated from the heritability of fitness in the environment of interest, or by extrapolation from genomic diversity.
48

Rodriguez-Valera, Francisco, Sarah K. Highlander, and Bryan A. White. Encyclopedia of Metagenomics: Environmental Metagenomics. Springer, 2015.

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49

Rodriguez-Valera, Francisco, Sarah K. Highlander, and Bryan A. White. Encyclopedia of Metagenomics: Environmental Metagenomics. Springer London, Limited, 2014.

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50

Rodriguez-Valera, Francisco, Sarah K. Highlander, and Bryan A. White. Encyclopedia of Metagenomics: Environmental Metagenomics. Springer, 2015.

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