Dissertations / Theses on the topic 'Endangered plants – Western Australia'

The Orchidaceae is characterized by a remarkably diverse range of life forms and some of the most highly specialized interactions with soil fungi and insect pollinators found in the flowering plants. Many species are rare or threatened with extinction either directly through loss of habitat or over-collection or, indirectly through debilitation or loss of mycorrhizal association or pollinator capacity. Australian temperate terrestrial orchids represent one of the most threatened groups in the Australian flora with many taxa clinging to existence in urban and rural bushland remnants, road verges and unprotected bushland. The aim of this study is to research and develop integrated conservation based on critical aspects of terrestrial orchid biology and ecology, towards the recovery of the rare and endangered Western Australian terrestrial orchid Caladenia huegelii. This study identified key aspects involved in an integrated conservation approach and research focused on conservation genetics, mycorrhizal interactions and in situ and ex situ conservation strategies for this species. Using polymorphic microsatellite molecular markers, high levels of genetic diversity were found within remnant populations of C. huegelii, while weak differentiation was observed among populations over the species geographic range. These results indicate historic genetic exchange between C. huegelii populations, a possible consequence of the sexually deceptive pollination strategy and the capacity for widespread seed dispersal. Symbiotic germination studies revealed compatibility barriers to C. huegelii germination with the orchid possessing a highly specific orchid-mycorrhizal association relative to common sympatric congeners. These results were reflected in a phylogenetic analysis of DNA sequences, revealing C. huegelii associates with only one endophyte species within the fungal family Sebacinaceae across its geographic range. Large scale in situ seed baiting demonstrated that endophytes compatible with C. huegelii were limited in distribution relative to common and widespread orchid species, a feature for C. huegelii that may be a major contributing factor in limiting the distributional range of the species. Detailed, within site seed baiting methods identified hotspots for mycorrhizal fungus compatible with C. huegelii that were unoccupied by the orchid. These mycorrhizal hotspots where used to investigate the effect of endophyte presence on survival of transplanted mature plants and seedling outplants. The in situ survival of glasshouse propagated seedlings was further optimized by incubating seedlings in growth containers before transfer to soil and outplanting seedlings in their second growing season. The findings of this study will substantially advance the recovery of C. huegelii and provide benchmark knowledge for similar projects with other rare and threatened terrestrial orchid species.

Almost half of the world�s mammal extinctions in the last two hundred years have occurred in Australia (Short and Smith 1994). The western barred bandicoot Perameles bougainville is one of a suite of species that is currently threatened with extinction, surviving only on two islands in Shark Bay, Western Australia. Reintroduction has been used as a tool in conservation biology to assist in the recovery of threatened species, such as the western barred bandicoot. The aims of this project were to 1) successfully reintroduce and establish a free-ranging mainland population of the western barred bandicoot at Heirisson Prong, Shark Bay, 2) contribute information on the biology of the species, its interactions with introduced species, and its likelihood of persistence as a reintroduced population in the longer-term, and 3) to provide recommendations to assist future reintroductions of the species. The first reintroduction of the western barred bandicoot from surviving remnant island populations to the mainland, some 60 years after its apparent mainland extinction, was from Dorre Island to Heirisson Prong in 1995. Animals were translocated initially to a predator-free refuge on Heirisson Prong, and then subsequently released to the 12 km2 peninsula where introduced predators (foxes Vulpes vulpes and feral cats Felis catus) had been controlled, but European rabbits Oryctolagus cuniculus had not. Despite a small founder number and high mortality of free-range bandicoots in the presence of a low-density feral cat population, the bandicoot population successfully established. The reintroduced population of western barred bandicoots provided an opportunity to study the biology of the species, and to compare it with the remnant island populations and other species of Australian bandicoot. Many population parameters were similar between the island and mainland western barred bandicoot populations, as well as between the western barred bandicoot and other bandicoot species, suggesting that the habitat at the reintroduction site is suitable for long-term persistence of the population. However, there were some notable differences. The western barred bandicoot is the smallest extant species of bandicoot, with fewer young per litter than recorded for other bandicoot species, adult sex ratios were closer to parity, animals reached sexual maturity later, and it is the only species of bandicoot where females are larger than males. Home range size is larger also than recorded for other species. Some of these differences may be explained in part by trade-offs between island dwarfism, lactational pressures, and nest defence. The nesting biology of the western barred bandicoot was studied at Heirisson Prong, including during periods of high and low densities of rabbits. Individuals of the species constructed and utilised nests in a similar fashion to other species of Australian bandicoot, nesting amongst litter underneath shrubs. The western barred bandicoot appeared to favour particular shrub species, especially when vegetation condition was poor due to rabbit damage, but displayed flexibility in being able to construct nests under a variety of shrub species where at least some surface litter was present. Grasses were used in nest construction only when rabbit density was low. Nests appear important for protection against temperature extremes and diurnal predators. Vegetation exclosures around three of the shrub species most commonly used by the western barred bandicoot for nest sites (Acacia ligulata, A. tetragonophylla and Melaleuca cardiophylla) were used to examine the impact of rabbits on vegetation on Heirisson Prong. A high-density rabbit population over the summer of 1997/98 caused in a decrease in canopy cover and the death of mature A. ligulata. Subsequent rainfall and low-density rabbit populations allowed A. tetragonophylla shrubs to recover their former structure, and M. cardiophylla to recover, but not to the same degree. The flexibility of western barred bandicoots in use of nest materials and their omnivorous diet may enable the species to survive in the face of habitat modification by rabbits. Population viability analysis was used to examine future options for the recovery of the endangered western barred bandicoot. Biological data from the Dorre Island and Heirisson Prong populations were input to the computer simulation program VORTEX. The western barred bandicoot populations were modelled under a variety of scenarios to examine the possible effects of changes in carrying capacity, founder population size, inbreeding depression, and the occurrence of drought and cat predation as catastrophes, on the probability of population extinction. This analysis highlighted the need for eradication of feral cats, above all other management actions. Cat predation was particularly potent when it acted through high loss of juveniles, as well as adult bandicoots. Predator control is considered critical for the long-term persistence of reintroduced populations of the western barred bandicoot. This study documents the first reintroduction of the endangered western barred bandicoot to mainland Australia. The population had been extant for four years at the completion of data collection for this thesis, in late 1999 and for over eight years at the finalisation of this thesis in July 2004. The knowledge gained from the reintroduction was used to discuss management recommendations and future options for the recovery of the species. The primary concern for reintroductions of this, and other species of bandicoots, remains the control of introduced predators. For long-term persistence of small, isolated populations, such as those of the western barred bandicoot at Heirisson Prong and the Arid Recovery Project at Roxby Downs in South Australia, and the eastern barred bandicoot Perameles gunnii at a range of sites in Victoria, the complete eradication of introduced predators is essential.

[Truncated abstract] Annual grasses have colonised a diverse range of environments in southern Australia. The “Silvergrasses” of the genus Vulpia are excellent examples being widely distributed, are prevalent weeds of agriculture and have had a long history to naturalise on the continent. Research was undertaken on Vulpia populations to identify if naturalising species have reproductive traits that provide propagules with the best chances of success. Furthermore, research aimed at investigating if these traits vary between species and their populations and how this variability related to the environment. A herbarium and field study was undertaken to establish what Vulpia species occur in SW Australia and to investigate environmental factors affecting their distribution. 169 herbaria specimens was examined and a botanical field survey of 189 sites was carried out in September 1998. Four species occur in the region: V. fasciculata, V. muralis, V. bromoides and two variants of V. myuros (V. myuros var. megalura and V. myuros var. myuros). V. bromoides and V. myuros were introduced early into the region while V. fasciculata and V. muralis more recently. It is plausible that Vulpia invaded the region via early seaport settlements and was spread by agricultural expansion. 96% of field sites contained V. myuros var. myuros, 79% V. myuros var. megalura, 50% V. bromoides, 6% V. fasciculata and 6% contained V. muralis. 90% of sites contained a mix of species and 9% of sites contained pure species stands. V. myuros var. myuros is the most widespread species and dominant form of V. myuros. It is found from high rainfall regions through to arid locations occurring on mostly light textured low fertility soils. V. muralis and V. fasciculata occur infrequently with the former widely dispersed and the later occurring predominantly on sands. V. bromoides occurs extensively in high rainfall regions but rarely extends to locations receiving less than 400-450mm annual rainfall and northward above 30°00’ latitude. It is predominantly on light to loamy textured soils that are fertile and acid. The most common species V. myuros and V. bromoides often coexist within sites but the dominance of one over the other is strongly correlated with growing season length and false break frequency. V. bromoides is positively correlated to growing season length and V. myuros is negatively related. The distribution of Vulpia species is strongly influenced by climate and soils. Variability in distribution is a reflection of the ecological differentiation between species to colonise different environments

[Truncated abstract] Understanding the ecohydrological dynamics of native vegetation can provide a benchmark for future efforts to restore landscape hydrology and allow predictions of potential landscape responses to climate uncertainty and associated changes in vegetation cover. The key drivers of evapotranspiration (Et) involved in maintaining a hydrological balance that minimises deep drainage in semi-arid ecosystems operate at a range of scales, and in this thesis I assessed the water relations of functionally and taxonomically diverse plant communities in south-western Australia from the leaf-level to ecosystem scale. For three key communities; heath shrubland, mallee (small multistemmed eucalypt) -heath, and open eucalypt woodland, populating a typical catenary sequence of soil types along a slope, I addressed the following questions: 1) What are the predominant water use strategies of wheatbelt native plant communities and what underlying trade-offs determine the distribution of plant water use strategies along the topographical gradient? 2) What are the roles of soil water and hydraulic limitation in controlling the spatial and temporal dynamics of transpiration in different functional types? 3) What is the magnitude and partitioning of total Et in the woodland community and what processes determine Et fluxes on a seasonal and annual basis? 4) What are the seasonal differences in Et among contrasting community-types and how do these patterns relate to canopy attributes and transpiration capacity along the topographical gradient? A key philosophical step in working with species-rich communities was to develop the concept of 'hydraulic functional types' (HFTs) to identify groupings of species using associations of physiological and morphological traits that define their hydrological functioning. .... However, as shallow soils dried during spring and summer, Et fluxes were significantly lower at the heath site (0.35 versus 0.66 mm day-1 for the woodland in February), demonstrating that the seasonality of Et fluxes differentiates communityscale contributions to regional water balance. Land-surface exchange of water over native vegetation is by no means uniform, but varies according to the spatial and temporal availability of water along topographical gradients. In general, shallow soils present fewer opportunities for water use partitioning and favour drought hardiness and a transpiration response that tracks recent rainfall patterns, whereas deeper soils promote greater differentiation in water use strategy and support canopies responsive to atmospheric demand. This thesis provides a unique description of ecosystem water balance in a global biodiversity hotspot by viewing complex vegetation mosaics in terms of their relevant hydrological units. This information is fundamental to sustainable agroforestry and revegetation efforts and our ability to gauge possible changes in vegetation structure and function under a changing climate.

[Truncated abstract] Soils of Western Australian cropping regions are very low in phosphorous. White lupin, chickpea, and faba bean are being increasingly used in rotations with wheat on these soils. Yield of wheat after a legume crop is frequently higher than its yield after wheat. It has been reported that in addition to nitrogen, legumes can also contribute to improve the availability of phosphorous for the subsequent crops. This PhD research project aimed at optimising the economic returns of wheat-legume rotations through more efficient use of P fertiliser in the legume phase as well as enhanced availability of soil P in the subsequent wheat phase

Australia is amongst the more efficient milk producers in the world.Milk production in the region of south-western Victoria relies mainly on rainfed white clover/perennial ryegrass pastures.As the demand for efficient and competitive milk production increases, the value of N2 fixation must be maximised. The objective of this thesis was to assess N2 fixation in grazed dairy pastures in south-western Victoria. Several tests and experiments were conducted and results noted. Studies revealed low white clover yields to be the major factor limiting N2 fixation in the region. For N2 fixation to have a significant impact on pasture quality and production, problems associated with legume persistence need to be addressed. Strategies may include the breeding of white clover cultivars with greater tolerance to water stress, improved winter production and increased competitiveness with companion species. Alternatively, the introduction of different legume species, better suited to the environment, may be appropriate. Where N2 fixation is unlikely to satisfy N demands, it may be necessary to introduce the strategic use of supplementary feeds or nitrogenous fertilisers. However, this would need to be carefully considered to ensure high input costs did not jeopardise the competitive advantage of low input pasture-based systems
Masters Thesis

[Truncated abstract] Industrial processing to refine alumina from bauxite ore produces millions of tonnes of refining residue each year in Australia. Revegetation of bauxite residue sand (BRS) is problematic for a number of reasons. Harsh chemical conditions caused by residual NaOH from ore digestion mean plants must overcome extremely high pH (initially >12), saline and sodic conditions. At such high pH, manganese (Mn) is rapidly oxidised from Mn2+ to Mn4+. Plants can take up only Mn2+. Thus, Mn deficiency is common in plants used for direct BRS revegetation, and broadcast Mn fertilisers have low residual value. Added to this, physical conditions of low water-holding capacity and a highly compactable structure make BRS unfavourable for productive plant growth without constant and large inputs of water as well as Mn. However, environmental regulations stipulate that the residue disposal area at Pinjarra, Western Australia, be revegetated to conform with surrounding land uses. The major land use of the area is pasture for grazing stock. Hence, pasture revegetation with minimum requirement for fertiliser and water application is desirable. This thesis investigates a number of avenues with potential for maintaining a productive pasture system on BRS whilst reducing the current level of Mn fertiliser and irrigation input. Emphasis was placed on elucidation of chemical and physical factors affecting Mn availability to plants in BRS

[Truncated abstract] In southern Western Australia the replacement of deep-rooted native vegetation with annual species has resulted in rising water tables and increased salinity due to insufficient water use. The area has a Mediterranean-type climate where rainfall during summer is generally low but variable resulting in limited plant growth. However, if rainfall does occur it potentially can contribute to to the increased water excess or drainage by increasing the soil water content before the main drainage period in winter. The first study investigated factors controlling soil water content changes during the fallow (December to May) in annual farming systems. This was achieved by examining variation in available soil water storage to a depth of 1.0-1.5 m at three sites within 13 seasons. Reasons for the variation were examined using the Agricultural Production Systems Simulator (APSIM). This study also investigated the relationship between soil water content at the end of the fallow period (1 May) and the amount of drainage below 2.5 m by using APSIM coupled to historical weather records at three locations. At the end of the fallow a mean of 24 mm (or 25%) of rainfall during the fallow was retained in the soil. Losses of soil water during the fallow were due to evaporation (mean of 60 mm), transpiration from plant cover (mean of 12 mm) and drainage below the root zone and run off (combined mean of 13 mm). Soil water accumulation during the fallow period had a significant impact on simulated drainage under wheat in the following growing season. Every 1 mm increase in soil wetness at the end of the fallow resulted in a 0.7-1 mm increase in simulated drainage during the growing season. ... Variation in the water excess due to variation in rainfall was greater than the reduction in water excess due to lucerne. This makes the decisions about when to grow lucerne to reduce water excess difficult if livestock enterprises are less profitable than cropping enterprises. The findings of this PhD indicate that lucerne does have a place in Mediterranean-type environments because of its greater water use than current farming practices. However, its use needs to be strategic and the strategy will vary from region to region. For example, in the low rainfall region lucerne sowings need to be matched with high soil water contents and phase length will generally be short (2-3 years). In comparison at high rainfall regions lucerne will need to be grown for longer or combined with other strategies to increase water use.

[Truncated abstract] Fire ephemerals are pioneer species that germinate in large numbers after fire and generally live for between six months and four years. Seeds produced during the short life span of these plants persist in the soil seedbank until a subsequent fire. This study examined the dormancy characteristics and germination requirements of ten Australian fire ephemeral species from five families. Seeds of four species germinated at one or more incubation temperatures in the laboratory, indicating that a proportion of their seedlots were non-dormant at the time of testing. Austrostipa compressa and Austrostipa macalpinei (Poaceae) produced >80% germination at 10?C and Alyogyne hakeifolia and Alyogyne huegelii (Malvaceae) produced 30-40% and 35-50% germination respectively at 10 to 25°C. In each of the Alyogyne species approximately 50% of seeds were impermeable to water, but scarification did not enable germination of all viable seeds suggesting that seeds which did not germinate, may have possessed physiological dormancy as well as physical dormancy. Remaining species had water permeable seeds. ... Germination of both Alyogyne species declined after six months of winter burial but was enhanced by heat treatments after a further six months of summer burial. Actinotus leucocephalus and Tersonia cyathiflora seeds exhibited annual dormancy cycling over two years of burial. Dormancy was alleviated over summer, allowing seeds of both species to germinate in smoke water when seeds were exhumed in autumn, and reimposed over winter, suppressing germination in spring. In Actinotus leucocephalus these dormancy changes were induced in the laboratory by warm (≥15°C) and cold (5°C) temperatures, alleviating and re-imposing dormancy, respectively. Wetting and drying seeds stored at 37°C further accelerated the rate of dormancy release. This dormancy cycling would increase the likelihood of seeds germinating when moisture availability in south-western Australia is greatest for seedling survival. It also explains the variation in germination response to smoke water observed in many species. Thus under natural conditions dormancy levels of fire ephemerals were altered during soil storage which enabled them to respond to fire-related cues such as heat and smoke water, and germinate in autumn. This information will assist in the use of these species in land rehabilitation and ornamental horticulture, and in the conservation of rare or endangered fire ephemerals.

[Truncated abstract] In south-western Australia a rare plant community occurs on shallow soils overlaying massive ironstone rock. These 'ironstone communities' are open shrublands, which are subject to extremes in drought and solar radiation and support many rare and endemic species. The restricted distribution of many of these species may be related to their high degree of specialisation to this harsh habitat and their inability to respond plastically to different environmental conditions. Indeed, earlier work has shown that ironstone Hakea species (Proteaceae) have a specialist root-system morphology investing mainly in deep roots, thereby increasing their chance of accessing cracks in the rock surface and obtaining water before the onset of summer drought. In this thesis I further examine aspects of specialisation and its possible consequences for species rarity using two ironstone Hakea species and comparing them with two of their widely distributed congeners. In the first experiment (Chapter 2) I explore inherent drought tolerance, independent of root-system morphology, as a further specialisation to the ironstone environment. All species were grown in sand in pots in a glasshouse for 7 months and then droughted for 5 weeks. There was no evidence that the ironstone species had a greater inherent drought tolerance than their common congeners. During drought all species maintained leaf water content of mature leaves by reducing stomatal conductance and osmotically adjusting, though ironstone species tended to OA (osmotic adjustment) more than common species. ... This suboptimal investment of resources may result in a lower competitive ability in shadier environments, and thus could partially explain their restricted distribution. In Chapter 4, I investigated the plasticity of root traits in response to levels of phosphorus supply. South-western Australian soils are phosphorus impoverished and phosphorus is well known to elicit plastic responses in root allocation and architecture. Ironstone species showed less plasticity in total root length, producing similar root length across P treatments, while common species showed an increase in root length with increasing [P]. Other root characteristics were similarly plastic in response to P treatment between species. However, when supplied with increasing [P], ironstone species invested an increasing proportion of roots in the bottom of pots while common species invested more in the top. This differential response in root allocation in response to P may reflect a fundamental trade-off between nutrient and water acquisition, with the ironstone species mainly foraging for water and investing in deeper roots, while the common species invest more in superficial roots to obtain nutrients. In conclusion, the rarity and restricted distribution of the ironstone Hakea species may be related to their specialist root-system morphology as well as a lowered phenotypic plasticity of functional traits. A reduction in plasticity may reduce their competitive ability outside their ironstone habitats, and thus contribute to the restricted distribution of these species. This may also be the case for other rock-outcrop endemics and more generally, for other rare plant species restricted to particular habitats where a lowered phenotypic plasticity in traits relevant to their particular habitat may contribute to their restricted distribution.

[Truncated abstract] Dryland salinity is a major environmental challenge facing agriculture in Australia. One option to manage dryland salinity is the use of perennial forages that increase water use of agricultural systems. However, the current array of perennial forages is limited. Forage species that satisfy the range of climatic and edaphic environments, and production systems, in southern Australia are needed (Chapter 1). In particular, low rainfall regions lack options other than lucerne (Medicago sativa L.) (Chapter 1). The Dorycnium genus (canary clovers) contains perennial species that might be useful forage plants for southern Australia. Dorycnium are sub-shrubs and their plant form differs from current perennial forages (Chapter 1). The aim of this project was to investigate some of the agronomic traits of several species of the genus Dorycnium to explore where they might be used in Australia and how they might be integrated into agricultural systems for management of dryland salinity. First, two desktop investigations assessed the potential adaptation and role of Dorycnium species in southern Australia: a review of the current literature on the agronomic characteristics of Dorycnium (Chapter 2) and an eco-geographical analysis to explore the ecology of Dorycnium species (Chapter 3). The agronomy of Dorycnium has been previously researched mainly in New Zealand, and although this provides some indications on where and how Dorycnium might be best used in Australia, this still requires testing in Australia. In particular, the aluminium tolerance of Dorycnium species indicates that they may be more suitable for acid soils than lucerne. Little ecological data was obtained for germplasm and herbarium collection sites of Dorycnium species. Climate comparisons between the native distribution of Dorycnium species in the Mediterranean basin and Australia, using spatial aridity data and CLIMEX climate match modelling, revealed that D. hirsutum and D. rectum might be suitably adapted to the temperate pasture regions of southern Australia. Suitable germplasm of D. pentaphyllum may also exist, but subsequent investigations in this project focussed on D. hirsutum and D. rectum.

Invasive plants pose serious threats to economic, social and environmental interests throughout the world. Developing strategies for their management requires a range of information that is often impractical to collect from ground based surveys. In other cases, such as retrospective analyses of historical invasion rates and patterns, data is rarely, if ever, available from such surveys. Instead, historical archives of remotely sensed imagery provides one of the only existing records, and are used in this research to determine invasion rates and reconstruct invasion patterns of a ca 70 year old exotic mesquite population (Leguminoseae: Prosopis spp.) in the Pilbara Region of Western Australia, thereby helping to identify ways to reduce spread and infill. A model was then developed using this, and other, information to predict which parts of the Pilbara are most a risk. This information can assist in identifying areas requiring the most vigilant intervention and pre-emptive measures. Precise information of the location and areal extent of an invasive species is also crucial for land managers and policy makers for crafting management strategies aimed at control, confinement or eradication of some or all of the population. Therefore, the third component of this research was to develop and test high spectral and spatial resolution airborne imagery as a potential monitoring tool for tracking changes at various intervals and quantifying the effectiveness of management strategies adopted. To this end, high spatial resolution digital multispectral imagery (4 channels, 1 m spatial resolution) and hyperspectral imagery (126 channels, 3 m spatial resolution) was acquired and compared for its potential for distinguishing mesquite from coexisting species and land covers.
These three modules of research are summarised hereafter. To examine the rates and patterns of mesquite invasion through space and time, canopies were extracted from a temporal series of panchromatic aerial photography over an area of 450 ha using unsupervised classification. Non-mesquite trees and shrubs were not discernible from mesquite using this imagery (or technique) and so were masked out using an image acquired prior to invasion. The accuracy of the mesquite extractions were corroborated in the field and found to be high (R2 = 0.98, P<0.001); however, accuracy varied between classes (R2 = 0.55 to 0.95). Additional sampling may be required in some of the wider class intervals, particularly the moderate density class (30 to 90%) as sampling frequency was poor within the range of 60 to 90%. This is a direct result of there being relatively few quadrats available to be randomly selected in this class. That is, quadrats with between 60-90% cover were only evident in 4% of the test area. A more robust approach would, therefore, be to split this class into two (e.g. 30-60% and 60-90%) and select an additional 15 quadrats in the 60-90% range. The resolution of the imagery (1.4 m) precluded mapping shrubs smaller than 3 m2. Rates and patterns were compared to mesquite invasions in its native range.
It was determined that: (i) the shift from grass to mesquite domination had been rapid, with rates of increase in canopy cover comparable to invasive populations where it is native; (ii) rate of patch recruitment was high in all land types (stony flats, red-loamy soils and the riparian zone), but patch expansion and coalescence primarily occurred over the riparian zone and redloamy soils; (iii) mesquite had been spread by sheep and macropods and the recent switch to cattle is likely to exacerbate spread as it is a far more effective dispersal vector; and (iv) early successional patterns, such as high patch initiation followed by coalescence of existing stands are similar to where mesquite is native, but patch mortality did not occur. A knowledge based model was used to predict which parts of the Pilbara region are most at risk. Several limitations of models often employed in predicting suitability ranges of invasive plants were identified and include: (i) an inability to incorporate the notion that within a suitability range there is likely to be a scale of favourability; (ii) an inability to assign greater importance to evidence that is likely to have more importance in defining the areas suitable for invasion; and (iii) an inability to control the level of conservatism in the final results. These three shortcomings were mitigated through the use of: (i) fuzzy membership functions to derive a range of favourability from poor to best; (ii) pairwise comparison to derive higher weights for layers perceived to be more important and vice versa; and (iii) the use of ordered weighted averaging to directly control the level of conservatism (or risk) inherent in the models produced.
Based on the outcomes of the historical reconstruction of spatial rates and patterns, data sources included land types, land use, and the derivation of a steady state wetness index from spot height data. Model outputs were evaluated using two methods: the area under the curves (AUC) produced from relative operating characteristic (ROC) plots and by the maximum Kappa procedure. Both techniques agreed that the model most representative of the validation data was the one assuming the most risk. To create a Boolean output representing areas suitable/not suitable for invasion, optimal cut-points were derived using the point closest to the top left hand corner of the ROC plot and by the maximum Kappa method. Both methods obtained identical cut-points, but it is argued that the coefficient produced by the maximum Kappa method is more easily interpreted. The highest AUC was found to be 0.87 and, based on the maximum Kappa method, can be described as good to very good agreement with the validation records used. Digital multispectral imagery (DMSI), acquired in the visible and near infrared portions of the spectrum (3 visible bands, 1 near infrared) with a spatial resolution of 1 m and hyperspectral imagery (126 bands, 3 m spatial resolution) was acquired to assess the potential of developing a reliable and repeatable mapping tool to facilitate the monitoring of spread and the effects of control efforts. Woody vegetation was extracted from the images using unsupervised classification and grouped into patches based on contiguity. Various statistics (e.g. maximum, minimum, median, mean, standard deviation, majority and variety) were assigned to these patches to garner more information for species separation.
These statistics were explored for their ability to separate mesquite from coexisting species using Tukey’s Honestly Significantly Different (HSD) test and, to reduce redundancy, followed by linear discriminant analysis. Two approaches were taken to select the patch statistics offering the best discrimination. The first approach selected patch statistics that best discriminated all species (named “overall separation”). This was compared to a second approach, which selected the best patch statistics that separated each species from mesquite on a pairwise basis (named “pairwise separation”). The statistics offering the best discrimination were used as input in an Artificial Neural Network (ANN) to assign class labels. An incremental cover evaluation, whereby producer’s accuracy was computed from mesquite patches grouped into various size-classes, showed that identification of mesquite patches smaller than 36 m2 was relatively low (43-51%) regardless of the method used for choosing between the patch statistics or image type. Accuracy improved for patches >36 m2 (66-94%) with both approaches and image types. However, both approaches used on the hyperspectral imagery were more reliable at capturing patches >36 m2 than the DMSI using either approach. The lowest omission and commission rates were obtained using pairwise separation on the hyperspectral imagery, which was significantly more accurate than DMSI using an overall separation approach (Z=2.78, P<0.05), but no significant differences were found between pairwise separation used on either media.
Consequently, all methods and imagery types, except for DMSI processed using overall separation, are capable of accurately mapping mesquite patches >36 m2. However, hyperspectral imagery processed using pairwise separation appears to be superior, even though not statistically different to hyperspectral imagery processed using overall separation or DMSI processed using pairwise separation at the 95% confidence level. Mapping smaller patches may require the use of very high spatial resolution imagery, such as that achievable from unmanned airborne vehicles, coupled with a hyperspectral instrument. Alternatively, management may continue to rely on visual airborne surveys flown at low altitude and speed, which have proven to be capable at mapping small and isolated mesquite shrubs in the study area used in this research.

[Truncated abstract] The malleefowl (Leipoa ocellata) is a large, ground-dwelling bird that is listed as threatened in all states of Australia in which it occurs. Its range encompasses much of southern Australia; however, much of it has been cleared for agriculture. Malleefowl are thought to have suffered substantial decline owing to multiple threats that include habitat loss, predation from exotic predators, grazing of habitat by introduced herbivores and fire - common threats in the decline of many Australian vertebrate species. The malleefowl has an unmistakeable appearance, unique biology, and widespread distribution across Australia. Consequently, it has been the focus of much scientific and community interest. In the Western Australian wheatbelt, community groups are working to conserve the species and have been actively collecting data on its distribution for over 15 years. The vast majority of these data are presence-only and have been collected in an opportunistic manner but, combined with long-term data from government agencies and museums spanning over 150 years, they present a significant opportunity to inform ecological questions relevant to the conservation of the species. The purpose of this study was to answer key ecological questions regarding the distribution, status and habitat preferences of malleefowl using unstructured occurrence records supplemented by reliable absences derived from Bird Atlas data sets and targeted surveys. Malleefowl in the Western Australian wheatbelt were used as a case study to illustrate: 1) how the decline of a species can be quantified and causes of that decline identified; and 2) how threats can be identified and responses to threats explored. I used bioclimatic modelling to define and explore variation within the climatic niche of the Malleefowl across Australia. '...' This thesis provides substantial additional knowledge about the ecology, distribution and status of malleefowl in Western Australia. It also illustrates how opportunistic and unstructured data can be augmented to investigate key aspects of a species' ecology. Despite the limitations of these data, which primarily relate to variation in observer effort across time and space, they can provide important outcomes that may not be achieved using standard survey and data collection techniques. The utility of opportunistic data is greatest in situations where the species: is recognisable and easily observed; is relatively sedentary; and occurs within a landscape containing consistent land use and habitat types. The approaches used in this study could be applied by researchers to situations where community interest exists for species with these attributes. At a national scale, the malleefowl is predicted to decline by at least 20% over the next three generations. The findings of this thesis suggest that the future for the species in the Western Australian wheatbelt may not be as dire as predicted elsewhere within its range, owing largely to the easing and cessation of threatening processes (e.g. land clearing, grazing of habitat by livestock) and the ability of the species to occupy a variety of habitat types. Despite this perceived security, some caution must be exercised until there is a more complete knowledge of the impact of fox predation and reduced rainfall due to climate change on malleefowl populations. Furthermore, the status of the species beyond the agricultural landscapes in Western Australia requires closer examination.

Bauxite mining is a major activity in the jarrah (Eucalyptus marginata Donn ex Sm.) forest of south-western Australia. After mining, poor tree growth can occur in some areas. This thesis aimed to determine whether soil constraints, including reduced depth and compaction, were responsible for poor tree growth at low-quality restored bauxite mines. In particular, this study determined the response of jarrah root morphology, leaf-scale physiology and growth/development to soil constraints at two contrasting (low-quality and high-quality) restored bauxite-mine sites. Jarrah root excavations at a low-quality restored site revealed that deep-ripping equipment failed to penetrate the cemented lateritic subsoil, causing coarse roots to be restricted to the top 0.5 m of the soil profile, resulting in fewer and smaller jarrah trees. An adjacent area within the same mine pit (high-quality site) had a kaolinitic clay subsoil, which coarse roots were able to penetrate to the average ripping depth of 1.5 m. Impenetrable subsoil prevented development of taproots at the low-quality site, with trees instead producing multiple lateral and sinker roots. Trees in riplines, made by deep-ripping, at the high-quality site accessed the subsoil via a major taproot, while those on crests developed large lateral and sinker roots. Bauxite mining is a major activity in the jarrah (Eucalyptus marginata Donn ex Sm.) forest of south-western Australia. After mining, poor tree growth can occur in some areas. This thesis aimed to determine whether soil constraints, including reduced depth and compaction, were responsible for poor tree growth at low-quality restored bauxite mines. In particular, this study determined the response of jarrah root morphology, leaf-scale physiology and growth/development to soil constraints at two contrasting (low-quality and high-quality) restored bauxite-mine sites. Jarrah root excavations at a low-quality restored site revealed that deep-ripping equipment failed to penetrate the cemented lateritic subsoil, causing coarse roots to be restricted to the top 0.5 m of the soil profile, resulting in fewer and smaller jarrah trees. An adjacent area within the same mine pit (high-quality site) had a kaolinitic clay subsoil, which coarse roots were able to penetrate to the average ripping depth of 1.5 m. Impenetrable subsoil prevented development of taproots at the low-quality site, with trees instead producing multiple lateral and sinker roots. Trees in riplines, made by deep-ripping, at the high-quality site accessed the subsoil via a major taproot, while those on crests developed large lateral and sinker roots.

[Truncated abstract] Establishment of vegetation and ecosystem functioning is central to the mitigation of environmental impacts associated with mining operations. This study investigated the ecophysiological functioning of mature plants in natural vegetation and applied this knowledge to diagnose problems affecting plant health and causes of poor plant cover at a mine-rehabilitation site. Ecophysiological parameters, including plant water relations and mineral nutrition, were studied in conjunction with soil physical, hydraulic and chemical properties. The natural ecosystem at the study location in the Great Sandy Desert is characterised by sand dunes and interdunes with distinct plant communities on each. One of the most notable features of the vegetation is the presence of large Corymbia chippendalei trees high on the dunes and relatively small scattered shrubs in the interdunes. Triodia grasses (spinifex), dominate the vegetation in both habitats but different species occur in each; T. schinzii is restricted entirely to the dunes, and T. basedowii occurs only in the interdunes. It was hypothesised that the deep sandy dunes afford greater water availability but lower nutrient supply to plants in this habitat compared with those occurring in the lower landscape position of the interdunes. Water-relations parameters (leaf water potentials, stomatal conductance, d13C) revealed that dune plants, particularly woody species, displayed higher water status and water use than closely related and often congeneric plants in the interdunes. Nutrient concentrations in soils were significantly higher in the interdunes, but concentrations in foliage were similar for related species between habitats. It is concluded that the dunes provide a greater store of accessible water than the soil profile in the interdunes. ... Following an experimental wetting pulse equivalent to a summer cyclone event, A. ancistrocarpa plants displayed significant increases in stomatal conductance, leaf water potential and sap velocity in lateral roots within three days of irrigation at the natural site and two days at the rehabilitation site. Secondary sinker roots originating from distal sections of lateral roots were evidently supplying water to maintain hydraulic function in laterals, thus enabling a fast pulse response. This was accentuated at the rehabilitation site where roots were confined closer to the surface. These results indicate that plants at the rehabilitation site are more dependent on small pulses of water and have less access to deep reserves than plants at the natural site. It is concluded that high runoff losses and insufficient soil depth are major factors contributing to plant water stress, and combined with the direct impacts of erosion, are largely responsible for plant death and ultimately poor plant cover. These issues can be alleviated if cover soil depth is increased to more than 0.5 m and slope angles are reduced to <12o. This study demonstrates the value of an ecophysiological approach for diagnosing problems affecting plant establishment at mine-rehabilitation sites. Furthermore, it has provided recommendations that will improve the rehabilitation strategy and lead to the development of a well vegetated, resilient ecosystem on a stable and non-polluting land form.

[Truncated abstract] Native Australian soils contain very low amounts of phosphorus. The soils of southwestern Australia are ancient and highly weathered. Consequently, the availability of phosphorus in these soils is too low for cropping purposes, so the application of P is necessary to maintain productivity. When P is applied to soil, typically as soluble superphosphate, it tends to be transformed to increasingly less soluble forms over time. Sparingly soluble forms of soil P are relatively inaccessible to Triticum aestivum; however, many grain legumes have a higher P-acquisition efficiency, allowing them to access pools of soil P that T. aestivum cannot. The P-acquisition efficiency of some grain legumes has been attributed in part to their ability to release large quantities of carboxylates, coupled with the development of cluster roots for species such as Lupinus albus. There are a number of unexplained observations in terms of the P-acquisition efficiency of grain legume species and the way that those species respond to P fertilisation. This PhD project aimed to study carboxylate release from a range of crop species, and investigate its role in variation among species for acquisition of phosphorus from sparingly soluble forms (chapter 1). ... L. albus (chapter 5). There was considerable variation in P acquisition among accessions. The variation cannot be attributed to differences in carboxylate release, cluster-root development or whole root system rhizosphere extract pH as measured in this study. We hypothesise that the variation might be attributed to differences in the ratio of release of protons and other cations localised around cluster roots. In conclusion studies of carboxylate exudation and sparingly soluble forms should use more than a single form if the aim is to draw generalised conclusions on P-uptake efficiency from sparingly soluble forms. Comparative studies of a range of species are a useful tool for enhancing our understanding of root physiology. While the benefit of carboxylates for providing access to poorly soluble P has been demonstrated, questions remain as to potential other roles for carboxylates, particularly in species that do not form cluster roots. Variation in P uptake among accessions of L. albus is present, and more work on proton release and ion balance of root clusters is necessary to understand intraspecific variation.

[Truncated abstract. Please see the pdf format for the complete text. Also, formulae and special characters can only be approximated here. Please see the pdf version for an accurate reproduction.] This thesis examines the water use, ecophysiology and hydraulic architecture of Eucalyptus marginata (jarrah) growing on bauxite mine rehabilitation sites in the jarrah forest of south-western Australia. The principal objective was to characterise the key environment and plant-based influences on tree water use, and to better understand the dynamics of water use over a range of spatial and temporal scales in this drought-prone ecosystem. A novel sap flow measurement system (based on the use of the heat pulse method) was developed so that a large number of trees could be monitored concurrently in the field. A validation experiment using potted jarrah saplings showed that rates of sap flow (transpiration) obtained using this system agreed with those obtained gravimetrically. Notably, diurnal patterns of transpiration were measured accurately and with precision using the newly developed heat ratio method. Field studies showed that water stress and water use by jarrah saplings on rehabilitation sites were strongly seasonal: being greatest in summer when it was warm and dry, and least in winter when it was cool and wet. At different times, water use was influenced by soil water availability, vapour pressure deficit (VPD) and plant hydraulic conductance. In some areas, there was evidence of a rapid decline in transpiration in response to dry soil conditions. At the end of summer, most saplings on rehabilitation sites were not water stressed, whereas water status in the forest was poor for small saplings but improved with increasing size. It has been recognised that mature jarrah trees avoid drought by having deep root systems, however, it appears that saplings on rehabilitation sites may have not yet developed functional deep roots, and as such, they may be heavily reliant on moisture stored in surface soil horizons. Simple predictive models of tree water use revealed that stand water use was 74 % of annual rainfall at a high density (leaf area index, LAI = 3.1), high rainfall (1200 mm yr-1) site, and 12 % of rainfall at a low density (LAI = 0.4), low rainfall (600 mm yr-1) site, and that water use increased with stand growth. A controlled field experiment confirmed that: (1) sapling transpiration was restricted as root-zone water availability declined, irrespective of VPD; (2) transpiration was correlated with VPD when water was abundant; and (3) transpiration was limited by soil-to-leaf hydraulic conductance when water was abundant and VPD was high (> 2 kPa). Specifically, transpiration was regulated by stomatal conductance. Large stomatal apertures could sustain high transpiration rates, but stomata were sensitive to hydraulic perturbations caused by soil water deficits and/or high evaporative demand. No other physiological mechanisms conferred immediate resistance to drought. Empirical observations were agreeably linked with a current theory suggesting that stomata regulate transpiration and plant water potential in order to prevent hydraulic dysfunction following a reduction in soil-to-leaf hydraulic conductance. Moreover, it was clear that plant hydraulic capacity determined the pattern and extent of stomatal regulation. Differences in hydraulic capacity across a gradient in water availability were a reflection of differences in root-to-leaf hydraulic conductance, and were possibly related to differences in xylem structure. Saplings on rehabilitation sites had greater hydraulic conductance (by 50 %) and greater leaf-specific rates of transpiration at the high rainfall site (1.5 kg m-2 day1) than at the low rainfall site (0.8 kg m-2 day1) under near optimal conditions. Also, rehabilitation-grown saplings had significantly greater leaf area, leaf area to sapwood area ratios and hydraulic conductance (by 30-50 %) compared to forest-grown saplings, a strong indication that soils in rehabilitation sites contained more water than soils in the forest. Results suggested that: (1) the hydraulic structure and function of saplings growing under the same climatic conditions was determined by soil water availability; (2) drought reduced stomatal conductance and transpiration by reducing whole-tree hydraulic conductance; and (3) saplings growing on open rehabilitation sites utilised more abundant water, light and nutrients than saplings growing in the forest understorey. These findings support a paradigm that trees evolve hydraulic equipment and physiological characteristics suited to the most efficient use of water from a particular spatial and temporal niche in the soil environment.

The objective of this Ph.D. research was to identify new and novel mechanisms of wild radish (Raphanus raphanistrum L.) resistance to photosystem II (PSII) inhibitors, auxinics, and acetohydroxyacid synthase (AHAS) inhibitors. PSIIinhibitor resistance was demonstrated to be target-site based, and conferred by a Ser264 to Gly substitution of the D1 protein. Auxinic resistance was associated with reduced herbicide translocation to the meristematic regions of resistant wild radish plants. Two new resistance mutations of wild radish AHAS were discovered, including one encoding the globally rare Asp376 to Glu substitution, and another encoding an Ala122 to Tyr substitution, which has never been identified or assessed for resistance in plants previously. Characterization of the frequency and distribution of AHAS resistance mutations in wild radish from the WA wheatbelt revealed that Glu376 was widespread, and that some mutations of AHAS are more common than others. Computer simulation was used to examine the molecular basis of resistance-endowing AHAS target-site mutations. Furthermore, through the computer-aided analysis, residues were identified with the potential to confer resistance upon substitution, but which have not previously been assessed for this possibility. Results from this Ph.D. research demonstrate that diverse, unrelated mechanisms of resistance to PSII inhibitors, auxinics, and AHAS inhibitors have evolved in wild radish of the WA wheatbelt, and that these mechanisms have accumulated in some populations.

Species prescriptions are developed for revegetating abandoned acidic coal overburden seepage sites in the Collie region of Western Australia. The research involved selecting appropriate plant species and determining successful methods of enhancing revegetation. Candidate species were screened for tolerance to acidic overburden materials, local climate conditions and metal toxicity. Methods tested included improving spoil conditions and trialing an alternative method for seeding.Twelve species of native plants were tested for tolerance in two acid overburden materials in pot and field trials. Eucalyptus robusta is the most tolerant, Eucalyptus camaldulensis and Eucalyptus cladocalyx are highly tolerant, Eucalyptus rudis and Melaleuca hamulosa demonstrate potential, provided adequate soil moisture is available.An important growth restriction factor in acid soils is the presence of free aluminium ions. A glasshouse trial performed on seven species for tolerance to aluminium toxicity revealed E. robusta as most tolerant and E. camaldulensis and Kunzea ericifolia a highly tolerant. E. rudis and M. hamulosa are moderately tolerant, but E. cladocalyx and Eucalyptus diversicolor are very sensitive to aluminium.Various methods were trialed to increase growth of seedlings transplanted on to acidic overburden sites. Both commercial cow manure and slow-release fertiliser tablets increase growth, whereas commercial potting mix and lime do not. Inoculation of plants with the ectomycorrhiza fungus Pisolithus tinctorius increases the amount of infection in roots but does not enhance plant growth.Supplementary fertilisation is necessary to maintain growth (nitrogen) and restore chlorophyll production (phosphorus) in fast growing eucalypt seedlings planted into typical acidic spoils. Poor levels of nutrient availability in such acidic sites appear to be the primary factor in ++
retarding growth. In the absence of supplementation, foliage reddening is observed in several species.An alternative method of seeding dumps is fascining. Prepared dump surfaces may be covered with capsule-laden branchwood of myrtaceous species. Material of the locally available Kunzea ericifolia is effective in producing many seedlings. Subsequent seedling growth is enhanced with fertiliser and lime addition.

Bibliography: leaves 69-78. Leaf gas exchange (LGE) of mango cultivars Kensington, Irwin and Tommy Atkins was investigated in a series of field experiments under varying environmental and physiological conditions in the Ord River Irrigation Area, Kununurra, Western Australia. The environmental influences on mango during fruit development are extreme producing high vapour pressure deficient (VPD) and photosynthetic photon flux density. This combined with internal pressures associated with crop load and water stress have a profound effect on LGE. Diurnal changes in atmospheric and leaf temperature are accompanied by changes in VPD in the field. Differences in cultivars in LGE response to changing environmental conditions were significant, with Kensington appearing the most sensitive to extreme atmospheric conditions. There appeared to be no cultivar differences in LGE with changing soil moisture status.