Dissertations / Theses on the topic 'Ecological Niche Factor Analysis'

I compared the performance of habitat models created from data of differing reliability. Because the reliability is dependent on the probability of detecting the species, I experimented to estimate detectability for a salamander species. Based on these estimates, I investigated the sensitivity of habitat models to varying detectability. Models were created using a database of amphibian and reptile observations at Fort A.P. Hill, Virginia, USA. Performance was compared among modeling methods, taxa, life histories, and sample sizes. Model performance was poor for all methods and species, except for the carpenter frog (Rana virgatipes). Discriminant function analysis and ecological niche factor analysis (ENFA) predicted presence better than logistic regression and Bayesian logistic regression models. Database collections of observations have limited value as input for modeling because of the lack of absence data. Without knowledge of detectability, it is unknown whether non-detection represents absence. To estimate detectability, I experimented with red-backed salamanders (Plethodon cinereus) using daytime, cover-object searches and nighttime, visual surveys. Salamanders were maintained in enclosures (n = 124) assigned to four treatments, daytime__low density, daytime__high density, nighttime__low density, and nighttime__high density. Multiple observations of each enclosure were made. Detectability was higher using daytime, cover-object searches (64%) than nighttime, visual surveys (20%). Detection was also higher in high-density (49%) versus low-density enclosures (35%). Because of variation in detectability, I tested model sensitivity to the probability of detection. A simulated distribution was created using functions relating habitat suitability to environmental variables from a landscape. Surveys were replicated by randomly selecting locations (n = 50, 100, 200, or 500) and determining whether the species was observed, based on the probability of detection (p = 40%, 60%, 80%, or 100%). Bayesian logistic regression and ENFA models were created for each sample. When detection was 80 __ 100%, Bayesian predictions were more correlated with the known suitability and identified presence more accurately than ENFA. Probability of detection was variable among sampling methods and effort. Models created from presence/absence data were sensitive to the probability of detection in the input data. This stresses the importance of quantifying detectability and using presence-only modeling methods when detectability is low. If planning for sampling as an input for suitability modeling, it is important to choose sampling methods to ensure that detection is 80% or higher.
Ph. D.

Climate change, land use change and invasive species are transforming global biodiversity at multiple scales. Projections are for threats to biodiversity from these global changes to continue into the future, with varied and discernible distribution changes for many species. Concomitantly, these global changes will interact with each other to further exacerbate the problem, as exemplified in this study. In New Zealand, climate change is expected to affect landscapes, fragmented and disturbed by land use change, further increasing the potential invasibility of these landscapes for a suite of existing and emerging invasive species. This thesis is concerned with the combined effects of climate and land use changes on the spatial distribution of the sub-tropical invasive plant, Tradescantia fluminensis (Vell.). The contribution of this thesis is to undertake an integrated assessment of the distribution change for this species in New Zealand. On the basis that climatic variables affect species distribution at larger scales, while land use, habitat, disturbance and dispersal mechanisms affect distribution at smaller scales, two separate analyses were undertaken. At the national scale BioCLIM and the Ecological Niche Factor Analysis (ENFA) were implemented using the variables: minimum temperature (July-August), MTminJ-A, and annual water deficit (November-February). At the landscape scale, only ENFA was implemented, using the variables: MTminJ-A, ECOSAT riparian classes (habitat) and proximity to roads, urban areas and streams (disturbance and dispersal sources). Three scenarios of climate change (CCSR B1-Low, CSIRO9 A1B-Mid and HadCM A1FI-High) and two scenarios of land use change (SmartGrowth and Buildout) were developed to the year 2050, using the CLIMPACTS Open Framework Modelling System and Geographic Information Systems, GIS, techniques respectively. The baseline species distribution model was extrapolated in ENFA, using the 2050 scenarios. Changes to potential threat from this species to protected areas at the landscape level were assessed spatially at the landscape level. This approach and its results are novel for this species. At the national scale the results for the modelling show that climate change will increase the potential habitat suitability of Tradescantia under all combined scenarios of CCSR, CSIRO9 and HadCM for mean minimum temperature (July-August), MTminJ-A and Annual Water Deficit, AWD. At the case study landscape, in the Western Bay of Plenty and Tauranga also the modelling results showed that climate change and land use changes will increase the suitability for Tradescantia by 2050. The 'core' or highest suitability areas increase under all future scenarios. At the national level core suitability increased by about 13% for the CCSR:B1-Low and CSIRO9:A1B-Mid and 22% for HadCM:A1FI-High combined scenario on the North Island. On the South Island, core areas increased by a much lower margin - 1.4%, 2.3% and 2.9% for CCSR:B1-Low, CSIRO9:A1B-Mid and HadCM:A1FI-High combined scenarios respectively. At the landscape level core areas increased by 5%, 8% and 21% for the CCSR:B1-Low+SmartGrowth, Darlam:A1b-Mid+SmartGrwoth and HadCM:A1FI-High+Build-out combined scenarios, respectively. This is true also for the Protected areas within the case study landscape, and indicate that the increasing if Tradescantia is able to track both climate and land use change through its dispersal and migration within the landscape 9 primarily in the inland and upland direction), then is will pose a greater risk to native habitats than at present. Integrated assessments and the outputs they produce are essential to exploring anticipated changes (through scenario-building) and in understanding the change spatial context and magnitude of projected changes from the combined effects of climate and land use changes into the future and need to be integrated into biodiversity-biosecurity management at multiple scales.

Kakapo (Strigops habroptilus) are a flightless, nocturnal parrot endemic to New Zealand. Thought to be extinct within their natural range, kakapo are currently listed as nationally critical. The current population of 86 individuals is managed by the Department of Conservation’s National Kakapo Team on two offshore islands in southern New Zealand, with all females of breeding age on Codfish Island (Whenua Hou). Kakapo only breed once every two to five years, coinciding with the mast fruiting of specific plant species. On Codfish Island, the proportion of adult female kakapo that breed in rimu (Dacrydium cupressinum) fruiting years is dependent on the quantity of fruit produced, with fewer females attempting to breed during low mast years. The purpose of this research is to investigate why only some adult female kakapo breed in low rimu fruiting years on Codfish Island, specifically assessing if foraging home range size and/or habitat selection influence breeding. A total of 506 location points were collected at night for 18 adult female kakapo between March and May 2006. These were used to estimate foraging home ranges and to assess if kakapo select for particular types of vegetation. Ecological Niche Factor Analysis was used to determine the relative importance of habitat variables in the distribution of female kakapo and to predict areas of suitable breeding habitat when rimu fruit is limited. The breeding success of individuals in 2005, a low rimu mast year, was used to identify if differences in home ranges or habitat selection occurred between breeding and non-breeding females. The large variation in foraging home range sizes recorded in this research was consistent with previous studies. Foraging home range sizes were on average twice the size for breeders than for non-breeders, suggesting that adult female kakapo may be limited in their ability to breed by the size of the area they occupy. Adult female kakapo did not randomly use vegetation on Codfish Island as some vegetation types were not used, while others were common inside foraging home ranges. Adult female kakapo utilise a broad niche and are capable of surviving in a wide range of habitats. However, breeding females were more specialised in their niche requirements than non-breeders, with breeders utilising areas with higher abundances of mature rimu trees. Females occurred in high elevation, flat areas of the island but this may have been because this is where appropriate vegetation types occurred. During low rimu mast years, breeding adult females were predicted to occupy habitat in high elevation, plateau areas with a high abundance of rimu. Areas identified as sub-optimal habitat for breeding included the coastal areas, the lower elevation area of the main valley and some ridgelines. The home ranges of all 10 breeding females contained some optimal habitat, while females who did not breed were more likely to be located in sub-optimal habitat. Although there were significant areas of optimal breeding habitat not occupied by adult female kakapo, other kakapo may have been present in these areas. To increase the proportion of females that breed in low rimu mast years, it may be necessary to remove sub-adult females or surplus adult males living in optimal breeding habitat from the island. Alternatively, females in sub-optimal breeding habitat could be fed supplementary foods or transferred to other islands where there is unoccupied suitable breeding habitat available.

Biological invasions pose a major threat to global biodiversity. While there is increasing concern regarding the impacts caused by non-indigenous species (NIS), generalisable tools for predicting their ecological effects have yet to be developed. Several researchers have suggested that examining the previously documented effects of NIS, termed invasion history, can serve as a basis for forecasting future impacts. Yet, while predictive models for impact have been devel oped based on the invasion histories of several widespread invaders, the generalisability of such approaches has not been demonstrated. The severity of the impacts caused by NIS may vary as a function of their local abundance across invaded sites. Thus by estimating the expected abundance of introduced species, at potential recipient locations, we may be able to identify habitats which are particularly vulnerable to their effects. While ecological niche-based models (ENM) have often been used to predict the abundance of species within their native ranges, such approaches have rarely been applied to NIS. In this thesis I conduct an extensive literature review, using 19 aquatic species, and assess the utility of invasion history for predicting future impacts. I illustrate that, while for most NIS limited and heterogeneous data currently inhibits the development of quantitative predictions, invasion history can often reveal the type and direction of future impacts. Using one of these species, Cyprinus carpio, as a case study, I conduct a meta-analysis and demonstrate that, where data is available, models incorporating NIS biomass can explain a substantial amount of variation in the severity of impacts across invaded locations. I then develop neural network-based ENM to forecast both the occurrence and biomass of C. carpio in a portion of its invaded range, using monitoring data from Minnesota. I test the ability of the resulting models to gene
Les invasions biologiques posent un risque majeur pour la biodiversité mondiale. Malgré qu'il y ait un intérêt grandissant concernant les impacts causés par les espèces non indigènes (ENI), des outils de prédictions de leurs effets écologiques restent encore à être développés. Plusieurs chercheurs ont suggéré que l'étude des impacts antérieurs des ENI, nommé historique d'invasion, pourrait servir en tant que référence pour prédire leurs effets futurs. Et malgré que des modèles de prédictions aient été développés selon l'historique d'invasion de certaines espèces envahissantes notoires, la précision globale de tels outils reste à être démontrée. La sévérité des impacts causés par les ENI peut varier selon leur abondance à travers des milieux envahis. Ainsi, par la prédiction de l'abondance des ENI, à travers des sites potentiellement envahissables, nous devrions être en mesure d'identifier les habitats particulièrement vulnérables face à leurs effets. En dépit que les modèles de niches fondées écologiques (MNE) aient souvent été utilisés pour prédire l'abondance des espèces dans leur aire de répartition d'origine, de telles approches ont rarement été mises en application envers des ENI. Dans cette thèse, j'entreprends une revue étendue des publications scientifiques concernant les ENI. En utilisant 19 espèces aquatiques comme échantillon, j'évalue l'utilité de l'historique d'invasion comme outil pour prévoir leurs impacts futurs. Je démontre que la plupart des données sur les impacts des ENI sont restreintes et hétérogènes, limitant le développement des prédictions quantitatives, mais que l'historique d'invasion peut souvent révéler le type et la direction et des impacts futurs. En utilisant un de ces ENI, Cyprinus carpio, comme sujet d'étude, je conduis une méta analyse et démontre que, où les données sont disponibles, les mod

Orientador: Ingrid Koch
Resumo: Aspidosperma pyrifolium Mart. & Zucc. é uma espécie com distribuição ampla e disjunta, variação morfológica e taxonomia complexa. Neste estudo é tratada como um complexo de espécies, e utilizada como modelo para delimitação de espécies através de múltiplos critérios operacionais (genéticos, morfológicos e ecológicos). Consideramos que espécies são segmentos de linhagens de uma metapopulação evoluindo separadamente, pois este é um conceito universal que diminuiu as visões conflitantes do que é considerado espécie. Realizamos análises filogenéticas com dados concatenados (ITS e rpl32-trnL) e de coalescência para testar o monofiletismo do complexo e seus grupos. Desenvolvemos marcadores microssatélites polimórficos para A. pyrifolium usados na avaliação da diversidade genética e estruturação de cinco populações naturais. Analisamos a morfologia através de morfometria, incluindo características quantitativas, tanto vegetativas quanto reprodutivas. As análises ecológicas, incluíram modelagem e testes de similaridade de nicho ecológico. Nossos resultados recuperaram o complexo A. pyrifolium como monofilético, com 3 subclados relacionados a regiões geográficas e vegetações específicas, resultados também corroborados na árvore de espécies. O clado 1 ocorre na Caatinga no Nordeste do Brasil, o clado 2 nas manchas de Floresta Estacional na região Centro-Oeste no Brasil e clado 3 na vegetação chaqueana no Mato grosso do Sul, Paraguai e Bolívia. Todas as análises de estrutura populaciona... (Resumo completo, clicar acesso eletrônico abaixo)
Abstract: Aspidosperma pyrifolium Mart. & Zucc. is a species with wide distribution and disjunct, morphological variation and complex taxonomy. In this study, we treated it as a species complex, and used as a model for species delimitation using multiple operational criteria (genetic, morphological and ecological). We consider species as segments of separately evolving metapopulation lineages, since this is a universal concept that diminished the conflicting visions of what is considered species. For this, we performed phylogenetic with concatenated data (ITS and rpl32-trnL) and coalescence analyzes to test the monophyly of the complex and its groups. We developed polymorphic microsatellites for complex A. pyrifolium for evaluated the genetic diversity and structure of five natural population. We analyzed morphology through morphometry, including quantitative characteristics, both vegetative and reproductive. The ecological analyzes included modeling and testing of ecological niche similarity. Our results recovered Aspidosperma pyrifolium complex as monophyletic, with 3 subclades related to geographic regions and specific vegetation, results also corroborated in the species tree. Clade 1 occurs in the Caatinga in Northeast Brazil, clade 2 in the Seasonal Forest patches in the Center-West region of Brazil and clade 3 in the Chaqueana vegetation in Mato Grosso do Sul, Paraguay and Bolivia. All analyzes of population structure suggested the formation of two genetic groups, one with the po... (Complete abstract click electronic access below)
Doutor

Os Flavivírus são vírus de 40 50 nm de diâmetro, com formas esféricas e RNA de fita simples, com sentido positivo e aproximadamente 11 kb de comprimento. O Vírus da Febre Amarela, protótipo do grupo, é o agente causador da Febre Amarela, uma antiga doença que causou epidemias generalizadas na África, Américas do Norte e do Sul e Europa do século XVII ao início do século XX, e depois ressurgiu nas últimas décadas na África sub- saariana e América do Sul tropical. O presente trabalho busca a reconstrução da transmissão da Febre Amarela na América do Sul, no tempo e espaço, em especial, considerando a provável influência das populações humanas, primatas não humanos e mosquitos, na evolução e distribuição das linhagens genéticas de Febre Amarela, aplicando modelos de inferência Bayesiana para análises filogenéticas e filogeográficas e testando hipóteses de distribuição geográfica com modelagem de nicho ecológico. Os dados dão poucas evidências de que as estratégias de vacinação vigentes tenham efetivamente colaborado para a diminuição da ocorrência de Febre Amarela, indicando possíveis erros na estratégia de vacinação. A partir da análise Coalescente da população viral de Febre Amarela, a população viral apresentou um decréscimo importante iniciado em meados dos anos 90. A análise filogeográfica sugere um padrão geral de transmissibilidade Source-Sink destacando a região amazônica como fonte de diversidade para as outras áreas estudadas, com uma estrutura filogeográfica secundária em ondas. Assim, as introduções do vírus em áreas fora da amazônia tem ocorrência aleatória e podem ser ligadas temporalmente e geograficamente ao norte da America do Sul. Os modelos de distribuição geográfica corroboram esse padrão e indicam uma área possível para circulação da Febre Amarela ampla, englobando diversos ecótonos. Os resultados indicam um possível efeito em longo prazo da vacinação atuando diretamente sobre a evolução e dinâmica filogenética da Febre Amarela e sugere que monitorar a evolução do vírus da Febre Amarela é uma estratégia válida para compreender sua distribuição geográfica e evidenciar mecanismos complexos de transmissão e introdução. Por sua vez, os modelos de Nicho Ecológico mostraram ser ferramentas adequadas para calcular o risco da doença em determinadas áreas, sem sua ocorrência prévia, contribuindo como um modelo preditivos para orgãos de Vigilância prepararem suas estratégias de prevenção e controle no caso de possível introdução de patógenos
The flaviviruses are viruses of 40-50 nm in diameter, with spherical shaped and single-strand RNA with positive sense and approximately 11 kb in length. The Yellow Fever virus is the prototype of the group and the causative agent of Yellow Fever, a disease which caused widespread epidemics in Africa, North America, South America and Europe of the seventeenth century to the early twentieth century. The disease reemerged in recent decades in sub-Saharan Africa and tropical South America. This manuscript aims to reconstruct, in time and space, the transmission of yellow fever in South America, through the applying of a Bayesian inference model, considering the probable influence of human populations, nonhuman primates and mosquitoes on the evolution and distribution of Yellow Fever genetic lineages. Distributional pattern hypothesis will be tested by computational modeling of ecological niche. The data provide little evidence that current vaccination strategies have effectively contributed to reducing the occurrence of Yellow Fever, indicating possible errors in the vaccination strategy. From the analysis of the Yellow Fever population Coalescence, the viral population showed a significant decrease started in the mid-90s. The phylogeographic analysis suggests a general pattern of transmissibility \"Source-Sink\" highlighting the Amazon region as a source of diversity for the other areas studied, with a secondary phylogeographic wave like structure. Thus, the introductions of the virus into areas outside the Amazon has random occurrence and can be linked temporally and geographically to the north of South America The geographical distribution models corroborate this pattern and indicate a broad possible area for Yellow Fever circulation, encompassing many ecotones. The results indicate a possible long-term effect of vaccination acting directly on the evolution and phylogenetic dynamics of Yellow Fever and suggests that monitoring the evolution of the Yellow Fever virus is a valid strategy to understand the geographical distribution and highlight complex transmission mechanisms and spatial movements. In turn Ecological Niche models showed as an appropriate tool to calculate disease risk in certain areas without previous occurrence of the disease, working as a predictive model for Surveillance institutions prepare their strategies for prevention and control in the case of possible pathogen introduction

Advances in medical technology have altered the need for certain types of surgery to be performed in traditional inpatient hospital settings. Less invasive surgical procedures allow a growing number of medical treatments to take place on an outpatient basis. Hospitals face growing competition from ambulatory surgery centers (ASCs). The competitive threats posed by ASCs are important, given that inpatient surgery has been the cornerstone of hospital services for over a century. Additional research is needed to understand how surgical volume shifts between and within acute care general hospitals (ACGHs) and ASCs. This study investigates how medical technology within the hospital industry is changing medical services delivery. The main purposes of this study are to (1) test Clayton M. Christensen’s theory of disruptive innovation in health care, and (2) examine the effects of disruptive innovation on appendectomy, cholecystectomy, and bariatric surgery (ACBS) utilization. Disruptive innovation theory contends that advanced technology combined with innovative business models—located outside of traditional product markets or delivery systems—will produce simplified, quality products and services at lower costs with broader accessibility. Consequently, new markets will emerge, and conventional industry leaders will experience a loss of market share to “non-traditional” new entrants into the marketplace. The underlying assumption of this work is that ASCs (innovative business models) have adopted laparoscopy (innovative technology) and their unification has initiated disruptive innovation within the hospital industry. The disruptive effects have spawned shifts in surgical volumes from open to laparoscopic procedures, from inpatient to ambulatory settings, and from hospitals to ASCs. The research hypothesizes that: (1) there will be larger increases in the percentage of laparoscopic ACBS performed than open ACBS procedures; (2) ambulatory ACBS will experience larger percent increases than inpatient ACBS procedures; and (3) ASCs will experience larger percent increases than ACGHs. The study tracks the utilization of open, laparoscopic, inpatient and ambulatory ACBS. The research questions that guide the inquiry are: 1. How has ACBS utilization changed over this time? 2. Do ACGHs and ASCs differ in the utilization of ACBS? 3. How do states differ in the utilization of ACBS? 4. Do study findings support disruptive innovation theory in the hospital industry? The quantitative study employs a panel design using hospital discharge data from 2004 and 2009. The unit of analysis is the facility. The sampling frame is comprised of ACGHs and ASCs in Florida and Wisconsin. The study employs exploratory and confirmatory data analysis. This work finds that disruptive innovation theory is an effective model for assessing the hospital industry. The model provides a useful framework for analyzing the interplay between ACGHs and ASCs. While study findings did not support the stated hypotheses, the impact of government interventions into the competitive marketplace supports the claims of disruptive innovation theory. Regulations that intervened in the hospital industry facilitated interactions between ASCs and ACGHs, reducing the number of ASCs performing ACBS and altering the trajectory of ACBS volume by shifting surgeries from ASCs to ACGHs.

Understanding the events and processes responsible for patterns of within species diversity, provides insight into major evolutionary themes like adaptation, species distributions, and ultimately speciation itself. Here, I combine ecological, genetic and spatial perspectives to evaluate the roles that both historical and contemporary factors have played in shaping the population structure and genetic variation of foxsnakes (Pantherophis gloydi). First, I determine the likely impact of habitat loss on population distribution, through radio-telemetry (32 individuals) at two locations varying in habitat patch size. As predicted, individuals had similar habitat use patterns, but restricted movements to patches of suitable habitat at the more disturbed site. Also, occurrence records spread across a fragmented region were non-randomly distributed and located close to patches of usable habitat, suggesting habitat distribution limits population distribution. Next, I combined habitat suitability modeling with population genetics (589 individuals, 12 microsatellite loci) to infer how foxsnakes disperse through a mosaic of natural and altered landscape features. Boundary regions between genetic clusters were comprised of low suitability habitat (e.g. agricultural fields). Island populations were grouped into a single genetic cluster suggesting open water presents less of a barrier than non-suitable terrestrial habitat. Isolation by distance models had a stronger correlation with genetic data when including resistance values derived from habitat suitability maps, suggesting habitat degradation limits dispersal for foxsnakes. At larger temporal and spatial scales I quantified patterns of genetic diversity and population structure using mitochondrial (101 cytochrome b sequences) and microsatellite (816 individuals, 12 loci) DNA and used Approximate Bayesian computation to test competing models of demographic history. Supporting my predictions, I found models with populations which have undergone population size drops and splitting events continually had more support than models with small founding populations expanding to stable populations. Based on timing, the most likely cause was the cooling of temperatures and infilling of deciduous forest since the Hypisthermal. On a smaller scale, evidence suggested anthropogenic habitat loss has caused further decline and fragmentation. Mitochondrial DNA structure did not correspond to fragmented populations and the majority of foxsnakes had an identical haplotype, suggesting a past bottleneck or selective sweep.
Thesis (Ph.D, Biology) -- Queen's University, 2011-01-11 10:40:52.476

Stem and progenitor cell fate (self-renewal, proliferation, survival, differentiation) is tightly controlled by niche factors and the interplay of these factors is particularly important to comprehend for the development of stem cell therapies. During erythropoiesis, erythroid progenitors at the colony forming unit-erythroid (CFU-E) stage are responsive to both stem cell factor (SCF) and erythropoietin (EPO); however, the joint action of SCF and EPO in these cells and the underlying mechanisms remain to be defined. In this study, quantitative data on the activation of signaling pathways and gene expression profiles provided definitive evidence for two parallel but complementary mechanisms that resulted in enhanced generation of red blood cells from mouse bone marrow-derived CFU-E culture in the presence of SCF and EPO. First, SCF and EPO signaling intersected within the extracellular signal-regulated kinase (ERK) pathway and the sustained ERK activation was required for the maximal changes in the expression levels of genes that are involved in the proliferation and survival of CFU-Es. Second, the apparent competition between SCF and EPO in regulating c-Kit expression was found to have a dramatic impact on the terminal differentiation of CFU-Es. The latter mechanism was, for the first time, reported in a primary cell system. In addition, a fetal liver-derived conditioned medium further enhanced the survival and proliferation of bone marrow CFU-Es in the presence of SCF and EPO by not only increasing the ERK signaling duration but also, the amplitude. The agents present in the conditioned media possess significant clinical potential to stimulate erythropoiesis both in vivo and in vitro. In conclusion, our study has provided novel insights into the mechanisms by which combinations of niche factors control the fate of erythroid progenitors at a unique transitional stage and highlighted the important role of the ERK signaling dynamics in adult erythropoiesis.

Coral reefs are highly complex and also highly threatened ecosystems. Population growth and the unsustainable use of coral reefs have resulted in 55% of the world’s reefs being considered degraded. Fishing, the primary ‘local’ threat on most reefs, has altered the composition of most reef communities. As a result, very few pristine coral reefs remain. Typically, coral reef research is done via underwater visual censuses, providing abundance estimates but no indication of trophic interactions, therefore we know relatively little about the structure of intact reef food webs. Understanding how human activities affect trophic structure and feeding interactions among resident reef species may be important for coral reef conservation. Here, I apply stable isotope analysis to coral reef piscivorous fishes from Kiritimati (Republic of Kiribati), the world’s largest atoll. I examine dietary niche metrics of five focal species (Cephalopholis argus, Cephalopholis urodeta, Aphareus furca, Lutjanus bohar, and Lutjanus fulvus) and of the piscivore functional group as a whole, across an anthropogenic disturbance gradient that results from the atoll’s heavily skewed geographic population distribution. Using bootstrapped stable carbon (δ13C) and nitrogen (δ15N) isotope values, controlled for body size effects and analysed with Bayesian methods using the SIAR (Stable Isotope Analysis in R) program, I provide evidence of isotopic niche differentiation in C. argus and L. fulvus relative to other sampled species in terms of niche width metrics and mean δ13C and δ15N values. I also analyse the effect of fishing pressure at an individual level (controlling for body size effects on stable isotope signatures for each species), population level (accounting for observed differences in body size distributions across the fishing pressure gradient for each species), and the ‘community’ level (accounting for body size and relative abundance differences of the five piscivores across the fishing pressure gradient). These metrics reveal species-specific changes in niche metrics of three of the focal species at the individual level: C. urodeta, showed regionally distinct niche width metrics but no apparent correlation with fishing pressure, while A. furca and L. bohar, both had broader niche width metrics in heavily fished areas. No significant effect of fishing pressure was found at population or community levels. This study provides the first evidence using stable isotopes that fishing can alter the diets of coral reef fishes. The mechanism by which it can do so, while not entirely clear, would most likely be by expanding a given species’ dietary diversity by either forcing it to switch to non-preferred prey items or changing the diet and/or body size of its prey items, both of which would reflect significant ecological changes within a community. This thesis provides evidence of the utility of stable isotope analyses in answering important ecological questions in coral reef food webs, and reveals that fishing can affect reef communities at the most fundamental level of trophic interactions.
Graduate
0329
burrilladrian@gmail.com

Magister Artium - MA
Backpacker tourism is a niche market of tourism that has been rapidly growing, South Africa in particular has become an increasingly popular destination for backpacker tourism (Visser 2004). Academic interest in backpacker tourism research has grown in recent years, although the current literature on backpacker tourism has focused on the economic significance and impacts with little empirical research conducted on the characteristics, motivations and behaviors. Cohen (2003) stresses that future research should stop referring to backpacking as if it were a homogeneous phenomenon, and should rather focus on its diverse manifestations in terms of origins, age, gender, class, nationality and cultural backgrounds of backpackers. Since backpacker tourism is a growing market it is important for the destination to understand the specifics and capabilities of the market in order to create sustainable products. The main aim of this research is to segment the backpacker tourism market in South Africa, in order to ascertain if any significant sub-groups exist. Both qualitative and quantitative methods were utilised to collect data including a distribution of 202 questionnaire surveys to backpackers within backpacker hostels and also participant observation was employed to gain an in-depth understanding of the phenomena. Factor and cluster analysis was used to analyse the data. The following motive-based segments were identified: Self-developers/ Learners, Experience Seekers, Escapers/ Independence, Adventures/ Social Seekers. The results revealed that these segments do illustrate an increase in the heterogeneity of backpacker tourism. The reason these sub-groups of backpackers are depicted in South Africa is to address the underlying desires of backpackers in order to satisfy their needs.

abstract: Niche variation among sexes and life stages within a population has been documented in many species, yet few studies have investigated niche variation within demographic groups or across ecological contexts. We examined the extent to which pregnant California sea lions (Zalophus californianus) at each of three breeding colonies target alternative prey resources and habitats. The three colonies are distributed across distinct regions of the Gulf of California, Mexico and have divergent population dynamics. We compared the nature of niche variation among colonies and investigated the fitness consequences of different foraging strategies within each colony. We analyzed the δ13C and δ15N values from fur collected from 206 suckling pups to characterize relative maternal foraging locations (δ13C) and trophic levels (δ15N) during the metabolically demanding late stages of gestation and lactation that occur simultaneously in California sea lions. The δ13C and δ15N values were regressed against pup body condition index values to compare the relative individual-level fitness benefits of different maternal foraging strategies. We found that the nature and extent of niche variation differed among colonies. Niche variation was most pronounced at the two largest colonies that appear to experience the highest levels of intraspecific competition and the variation was consistent with habitat features. One colony (Granito) displayed two distinct foraging groups with indistinguishable median pup body condition values, whereas the second (San Jorge) exhibited continuous niche variation and pup body condition varied in relation to maternal foraging location and trophic level, suggesting disparities among alternative foraging strategies. For the smallest colony (Los Islotes), females occupy similar niches with a few outliers. Body condition values of pups at this colony were most variable, but did not vary with maternal foraging strategy. Our results provide evidence for intrapopulation niche variation among demographically similar individuals during a period of high metabolic stress and reproductive importance. This work suggests possible fitness benefits conferred by alternative foraging strategies, and calls into question the common assumption that members of a population are ecologically equivalent. Future research aimed at understanding animal foraging strategies should consider the nature and extent of niche variation in the context of local ecological conditions.
Dissertation/Thesis
M.S. Biology 2013

碩士
國立臺北教育大學
自然科學教育學系碩士班
98
Because of population extinction of wild formosan Sike deer (Cervus nippon taiouanus) in 1969, Kenting National Park launched a Sika deer restoration program in 1984. In the year from 1994 to 1997, Sike deer was released to the field. Currently, homerange of the deer has expanded to 4000 hectares. So, we put eyes on the sphere of activities about Formosan Sika deer and investigate into line transect survey. Therefore, we carried out the research in dry and wet seasons, finding 47 sites in five months of dry seasons and 44 sites in six months of wet seasons. The rain scouring may be the reason causing less number in wet seasons. For terrain, Sika deer prefer to choose crest line as their bedding sites, where provide broad eyesight and escape natural enemy easily. For gradient, the resting places in flat-place occupied higher rate, where is more comfortable for Sika deer. Furthermore, the condition of surface for Sika deer, the bedding sites of lawn and bare earth accounted for 50% respectively have higher rate. For the density of boscage, the sparse places has higher rate. Moreover, the vegetation for sida deer, preferring to choose deciduous forest not grasslands. In addition, they prefer to secret places where covered thicket as their shelter. Besides Sika deer prefer to high wind speed place. All of above show that Sika deer have about their bedding sites which has relationship with escaping natural enemies and the temperature control.

Executive functioning skills are paramount to our ability to purposefully and successfully mediate our actions within our day-to-day environment. Dysfunction of the executive system can result in a multitude of behavioral manifestations in all stages of life. Increasing evidence supports the use of rating scales to obtain a more comprehensive and ecologically valid understanding of an individual’s executive functioning. The current thesis involves two articles examining the use of behavioral rating scales in the assessment of executive functions. Study 1: In response to a recent proliferation of executive functions rating scales, this article reviews and discusses currently available scales for the assessment of executive functions across the lifespan. Study 2: This study derived an executive functions screener from the Behavioral Assessment System for Children (BASC-2-SRP-COL) for use in young adults and evaluated it against a well-known executive function rating scale (the Behavior Rating Inventory of Executive Function-Adult Version).
Graduate
0622
0632
eduggan@uvic.ca

Microorganisms are ubiquitously distributed on the earth and drive the fundamental element cycling in the biosphere. Their metabolic activities serve human societies in countless areas such as biotechnological engineering, food engineering, energy production, waste disposal et cetera. For human beings, and also for animals, microorganisms are imperative for health especially as colonizers of the gut system. Microbial resource management, especially when complex communities are exploited in biotechnology is a key challenge. Therefore, communities are more and more in the focus of basic research in microbiology complementary to pure cultivation technologies. Owing to their complexity, microbial communities are almost exclusively studied on the basis of bulk parameters and empirical expert knowledge. Bulk parameters are representative for an entire community performance but do not allow a segregated analysis of subpopulations or subcommunities, let alone individuals and their disparate functions within a community. This thesis aims to resolve microbial community properties and mechanisms of assembly in managed ecosystems on the individual level (i.e. single cell). For this the flow cytometric toolbox was employed and further expanded, which phenotypically classifies microbial individuals into sub-communities according to their physiological similarities. Workflows for the fast analysis and evaluation of dynamics in community structure, assembly and interaction were developed. Stability properties of communities, i.e. resistance, resilience, displacement speed and elasticity, can now quantitatively be determined based on cytometric data. For resilience behavior an on-line tool was developed. In addition, the relative proportions of neutral and deterministic forces that structure a microbial community can now be unraveled. As consequence, microbial flow cytometry has been proven to be a powerful tool for analysing complex microbial communities, and will allow huge improvements in understanding and control of microbial communities in managed and natural ecosystems.:Contents Summary ............................................................................................................. I Zusammenfassung ........................................................................................... IV 1 Introduction ..................................................................................................... 1 1.1 Microbial community and ecology ........................................................... 1 1.1.1 What is a microbial community? ...................................................... 1 1.1.2 Flow cytometry as a tool to study microbial communities ................ 2 1.2 Community structure and diversity ........................................................ 10 1.2.1 Community structure...................................................................... 10 1.2.2 Diversity metrics ............................................................................ 10 1.2.3 Evaluating structure and diversity with flow cytometry ................... 12 1.3 Community assembly and dynamics ..................................................... 13 1.3.1 Basic assembly processes ............................................................ 13 1.3.2 Evaluating assembly processes with flow cytometry ..................... 16 1.4 Community interactions ......................................................................... 18 1.4.1 Abiotic interactions of microbes and their surroundings................. 18 1.4.2 Biotic interactions of microbial partners ......................................... 18 1.4.3 Evaluating interactions with flow cytometry ................................... 20 1.5 Community functions ............................................................................. 22 1.5.1 Omics approaches to study functions in microbial communities .... 22 1.5.2 Evaluating functions with flow cytometry ....................................... 23 1.6 Aims of this study .................................................................................. 25 2 Publications .................................................................................................. 27 2.1 Overview of publications ....................................................................... 27 2.2 Published articles .................................................................................. 28 2.2.1 Publication 1 .................................................................................. 29 2.2.2 Publication 2 .................................................................................. 42 2.2.3 Publication 3 (under review) .......................................................... 60 3 Discussion .................................................................................................... 81 3.1 The importance of perceiving ecological situations ............................... 81 3.2 Stability properties of a microbial community ........................................ 84 3.3 Assembly processes in insular environments ....................................... 87 3.3.1 Niche differentiation under balanced cultivation conditions ........... 88 3.3.2 Neutral assembly under balanced cultivation conditions ............... 89 3.3.3 From intermediate disturbance to a non‐equilibrium system ......... 90 3.4 On-line analysis of reactor data ............................................................ 93 3.5 Conclusion and outlook ......................................................................... 95 4 References ................................................................................................... 97 5 Acknowledgement ...................................................................................... 105 6 Appendix .................................................................................................... 106 6.1 Declaration of independent work ......................................................... 106 6.2 Author contributions of published articles............................................ 107 6.3 Curriculum vitae .................................................................................. 111 6.4 List of Publications and conference contributions ............................... 112 6.5 Supplementary materials .................................................................... 113 6.5.1 Supplementary material for publication 1 .................................... 113 6.5.2 Supplementary material for publication 2 .................................... 140 6.5.3 Supplementary material for publication 3 .................................... 174