Journal articles on the topic 'DNA strand'
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Maslowska, Katarzyna H., Karolina Makiela-Dzbenska, Jin-Yao Mo, Iwona J. Fijalkowska, and Roel M. Schaaper. "High-accuracy lagging-strand DNA replication mediated by DNA polymerase dissociation." Proceedings of the National Academy of Sciences 115, no. 16 (April 2, 2018): 4212–17. http://dx.doi.org/10.1073/pnas.1720353115.
Shi, Jiezhong, Ben Zhang, Tianyi Zheng, Tong Zhou, Min Guo, Ying Wang, and Yuanchen Dong. "DNA Materials Assembled from One DNA Strand." International Journal of Molecular Sciences 24, no. 9 (May 3, 2023): 8177. http://dx.doi.org/10.3390/ijms24098177.
Jensen, Sarah Ø., Nadia Øgaard, Hans Jørgen Nielsen, Jesper B. Bramsen, and Claus L. Andersen. "Enhanced Performance of DNA Methylation Markers by Simultaneous Measurement of Sense and Antisense DNA Strands after Cytosine Conversion." Clinical Chemistry 66, no. 7 (May 27, 2020): 925–33. http://dx.doi.org/10.1093/clinchem/hvaa100.
Fan, Xinqing, and Carolyn Mary Price. "Coordinate Regulation of G- and C Strand Length during New Telomere Synthesis." Molecular Biology of the Cell 8, no. 11 (November 1997): 2145–55. http://dx.doi.org/10.1091/mbc.8.11.2145.
Ma, Jingjing. "Molecular Logic Gate Based on DNA Strand Displacement Reaction." Journal of Nanoelectronics and Optoelectronics 16, no. 6 (June 1, 2021): 974–77. http://dx.doi.org/10.1166/jno.2021.3037.
Sugiman-Marangos, Seiji N., Yoni M. Weiss, and Murray S. Junop. "Mechanism for accurate, protein-assisted DNA annealing by Deinococcus radiodurans DdrB." Proceedings of the National Academy of Sciences 113, no. 16 (April 4, 2016): 4308–13. http://dx.doi.org/10.1073/pnas.1520847113.
Bolt, Edward L., and Thorsten Allers. "New enzymes, new mechanisms?: DNA repair by recombination in the Archaea." Biochemist 26, no. 3 (June 1, 2004): 19–21. http://dx.doi.org/10.1042/bio02603019.
Domljanovic, Ivana, Alessandro Ianiro, Curzio Rüegg, Michael Mayer, and Maria Taskova. "Natural and Modified Oligonucleotide Sequences Show Distinct Strand Displacement Kinetics and These Are Affected Further by Molecular Crowders." Biomolecules 12, no. 9 (September 6, 2022): 1249. http://dx.doi.org/10.3390/biom12091249.
Cronan, Glen E., Elena A. Kouzminova, and Andrei Kuzminov. "Near-continuously synthesized leading strands inEscherichia coliare broken by ribonucleotide excision." Proceedings of the National Academy of Sciences 116, no. 4 (January 7, 2019): 1251–60. http://dx.doi.org/10.1073/pnas.1814512116.
Delagoutte, Emmanuelle, and Giuseppe Baldacci. "5′CAG and 5′CTG Repeats Create Differential Impediment to the Progression of a Minimal Reconstituted T4 Replisome Depending on the Concentration of dNTPs." Molecular Biology International 2011 (August 10, 2011): 1–14. http://dx.doi.org/10.4061/2011/213824.
Vaitsiankova, Alina, Kamila Burdova, Margarita Sobol, Amit Gautam, Oldrich Benada, Hana Hanzlikova, and Keith W. Caldecott. "PARP inhibition impedes the maturation of nascent DNA strands during DNA replication." Nature Structural & Molecular Biology 29, no. 4 (March 24, 2022): 329–38. http://dx.doi.org/10.1038/s41594-022-00747-1.
Bielawski, Joseph P., and John R. Gold. "Mutation Patterns of Mitochondrial H- and L-Strand DNA in Closely Related Cyprinid Fishes." Genetics 161, no. 4 (August 1, 2002): 1589–97. http://dx.doi.org/10.1093/genetics/161.4.1589.
Moore, John D., and Jocelyn E. Krebs. "Histone modifications and DNA double-strand break repair." Biochemistry and Cell Biology 82, no. 4 (August 1, 2004): 446–52. http://dx.doi.org/10.1139/o04-034.
Hahn, Jaeseung, and William M. Shih. "Thermal cycling of DNA devices via associative strand displacement." Nucleic Acids Research 47, no. 20 (October 4, 2019): 10968–75. http://dx.doi.org/10.1093/nar/gkz844.
Yu, Man, and Warren Masker. "T7 Single Strand DNA Binding Protein but Not T7 Helicase Is Required for DNA Double Strand Break Repair." Journal of Bacteriology 183, no. 6 (March 15, 2001): 1862–69. http://dx.doi.org/10.1128/jb.183.6.1862-1869.2001.
Griffith, Jack D., Lorelei D. Harris, and Stephen L. Brenner. "Dna Strand Exchange." Critical Reviews in Biochemistry 23, sup1 (January 1988): S43—S86. http://dx.doi.org/10.3109/10409238809083375.
Scalise, Dominic, Nisita Dutta, and Rebecca Schulman. "DNA Strand Buffers." Journal of the American Chemical Society 140, no. 38 (September 11, 2018): 12069–76. http://dx.doi.org/10.1021/jacs.8b05373.
Wu, CHUNG-I. "DNA strand asymmetry." Nature 352, no. 6331 (July 1991): 114. http://dx.doi.org/10.1038/352114b0.
Weiser, Martin, and Hans-Achim Wagenknecht. "Dynamic DNA architectures: spontaneous DNA strand exchange and self-sorting driven by perylene bisimide interactions." Chemical Communications 51, no. 92 (2015): 16530–33. http://dx.doi.org/10.1039/c5cc06491k.
Hernandez, Alfredo J., Seung-Joo Lee, and Charles C. Richardson. "Primer release is the rate-limiting event in lagging-strand synthesis mediated by the T7 replisome." Proceedings of the National Academy of Sciences 113, no. 21 (May 9, 2016): 5916–21. http://dx.doi.org/10.1073/pnas.1604894113.
Prévost, Chantal, and Masayuki Takahashi. "Geometry of the DNA strands within the RecA nucleofilament: role in homologous recombination." Quarterly Reviews of Biophysics 36, no. 4 (November 2003): 429–53. http://dx.doi.org/10.1017/s0033583504003956.
Loeb, Daniel D., and Ru Tian. "Mutations That Increase In Situ Priming Also Decrease Circularization for Duck Hepatitis B Virus." Journal of Virology 75, no. 14 (July 15, 2001): 6492–97. http://dx.doi.org/10.1128/jvi.75.14.6492-6497.2001.
Thomas, David C., Yegor A. Voronin, Galina N. Nikolenko, Jianbo Chen, Wei-Shau Hu, and Vinay K. Pathak. "Determination of the Ex Vivo Rates of Human Immunodeficiency Virus Type 1 Reverse Transcription by Using Novel Strand-Specific Amplification Analysis." Journal of Virology 81, no. 9 (February 21, 2007): 4798–807. http://dx.doi.org/10.1128/jvi.02471-06.
Hentosh, P., and P. Grippo. "2-Chloro-2′-deoxyadenosine monophosphate residues in DNA enhance susceptibility to 3′ → 5′ exonucleases." Biochemical Journal 302, no. 2 (September 1, 1994): 567–71. http://dx.doi.org/10.1042/bj3020567.
Lestienne, Patrick P. "Priming DNA Replication from Triple Helix Oligonucleotides: Possible Threestranded DNA in DNA Polymerases." Molecular Biology International 2011 (September 14, 2011): 1–9. http://dx.doi.org/10.4061/2011/562849.
Lin, D. C., B. Yurke, and N. A. Langrana. "Inducing Reversible Stiffness Changes in DNA-crosslinked Gels." Journal of Materials Research 20, no. 6 (June 1, 2005): 1456–64. http://dx.doi.org/10.1557/jmr.2005.0186.
Lo, Chen-Yu, and Yang Gao. "DNA Helicase–Polymerase Coupling in Bacteriophage DNA Replication." Viruses 13, no. 9 (August 31, 2021): 1739. http://dx.doi.org/10.3390/v13091739.
Boyer, Benjamin, Claudia Danilowicz, Mara Prentiss, and Chantal Prévost. "Weaving DNA strands: structural insight on ATP hydrolysis in RecA-induced homologous recombination." Nucleic Acids Research 47, no. 15 (August 2, 2019): 7798–808. http://dx.doi.org/10.1093/nar/gkz667.
Gao, Yang, Yanxiang Cui, Tara Fox, Shiqiang Lin, Huaibin Wang, Natalia de Val, Z. Hong Zhou, and Wei Yang. "Structures and operating principles of the replisome." Science 363, no. 6429 (January 24, 2019): eaav7003. http://dx.doi.org/10.1126/science.aav7003.
Lukac, David, Zuzana Machacova, and Pavel Moudry. "Emetine blocks DNA replication via proteosynthesis inhibition not by targeting Okazaki fragments." Life Science Alliance 5, no. 12 (September 9, 2022): e202201560. http://dx.doi.org/10.26508/lsa.202201560.
Masai, Hisao, Naoko Kakusho, Rino Fukatsu, Yue Ma, Keisuke Iida, Yutaka Kanoh, and Kazuo Nagasawa. "Molecular architecture of G-quadruplex structures generated on duplex Rif1-binding sequences." Journal of Biological Chemistry 293, no. 44 (September 14, 2018): 17033–49. http://dx.doi.org/10.1074/jbc.ra118.005240.
Kapadia, Jay Bhakti, Nawwaf Kharma, Alen Nellikulam Davis, Nicolas Kamel, and Jonathan Perreault. "Toehold-mediated strand displacement to measure released product from self-cleaving ribozymes." RNA 28, no. 2 (December 3, 2021): 263–73. http://dx.doi.org/10.1261/rna.078823.121.
Meagher, Martin, Alexander Myasnikov, and Eric J. Enemark. "Two Distinct Modes of DNA Binding by an MCM Helicase Enable DNA Translocation." International Journal of Molecular Sciences 23, no. 23 (November 24, 2022): 14678. http://dx.doi.org/10.3390/ijms232314678.
Nelson, W. G., and M. B. Kastan. "DNA strand breaks: the DNA template alterations that trigger p53-dependent DNA damage response pathways." Molecular and Cellular Biology 14, no. 3 (March 1994): 1815–23. http://dx.doi.org/10.1128/mcb.14.3.1815-1823.1994.
Nelson, W. G., and M. B. Kastan. "DNA strand breaks: the DNA template alterations that trigger p53-dependent DNA damage response pathways." Molecular and Cellular Biology 14, no. 3 (March 1994): 1815–23. http://dx.doi.org/10.1128/mcb.14.3.1815.
Szambowska, Anna, Ingrid Tessmer, Petri Kursula, Christian Usskilat, Piotr Prus, Helmut Pospiech, and Frank Grosse. "DNA binding properties of human Cdc45 suggest a function as molecular wedge for DNA unwinding." Nucleic Acids Research 42, no. 4 (November 28, 2013): 2308–19. http://dx.doi.org/10.1093/nar/gkt1217.
Zhang, Zi-Mou, Peng-Cheng Gao, Zhi-Fei Wang, Bai-Wang Sun, and Yong Jiang. "DNA-caged gold nanoparticles for controlled release of doxorubicin triggered by a DNA enzyme and pH." Chemical Communications 51, no. 65 (2015): 12996–99. http://dx.doi.org/10.1039/c5cc05164a.
Aldag, Pierre, Fabian Welzel, Leonhard Jakob, Andreas Schmidbauer, Marius Rutkauskas, Fergus Fettes, Dina Grohmann, and Ralf Seidel. "Probing the stability of the SpCas9–DNA complex after cleavage." Nucleic Acids Research 49, no. 21 (November 18, 2021): 12411–21. http://dx.doi.org/10.1093/nar/gkab1072.
Yu, Chuanhe, Haiyun Gan, Albert Serra-Cardona, Lin Zhang, Songlin Gan, Sushma Sharma, Erik Johansson, Andrei Chabes, Rui-Ming Xu, and Zhiguo Zhang. "A mechanism for preventing asymmetric histone segregation onto replicating DNA strands." Science 361, no. 6409 (August 16, 2018): 1386–89. http://dx.doi.org/10.1126/science.aat8849.
Thompson, Shannon J., Aoife Rooney, Kevin M. Prise, and Stephen J. McMahon. "Evaluating Iodine-125 DNA Damage Benchmarks of Monte Carlo DNA Damage Models." Cancers 14, no. 3 (January 18, 2022): 463. http://dx.doi.org/10.3390/cancers14030463.
Lin, Maoxuan, and Jun-tao Guo. "New insights into protein–DNA binding specificity from hydrogen bond based comparative study." Nucleic Acids Research 47, no. 21 (October 30, 2019): 11103–13. http://dx.doi.org/10.1093/nar/gkz963.
Gao, Rui, Zhuang Cai, Jianbang Wang, and Huajie Liu. "Condensed DNA Nanosphere for DNA Origami Cryptography." Chemistry 5, no. 4 (November 8, 2023): 2406–17. http://dx.doi.org/10.3390/chemistry5040159.
Mohamadi, Maryam, Ali Mostafavi, and Masoud Torkzadeh-Mahani. "Design of a Sensitive and Selective Electrochemical Aptasensor for the Determination of the Complementary cDNA of miRNA-145 Based on the Intercalation and Electrochemical Reduction of Doxorubicin." Journal of AOAC INTERNATIONAL 100, no. 6 (November 1, 2017): 1754–60. http://dx.doi.org/10.5740/jaoacint.16-0302.
Zhang, Jiahui, Ashkan Fakharzadeh, Feng Pan, Christopher Roland, and Celeste Sagui. "Atypical structures of GAA/TTC trinucleotide repeats underlying Friedreich’s ataxia: DNA triplexes and RNA/DNA hybrids." Nucleic Acids Research 48, no. 17 (August 21, 2020): 9899–917. http://dx.doi.org/10.1093/nar/gkaa665.
Sinden, Richard, R. "Slipped strand DNA structures." Frontiers in Bioscience 12, no. 12 (2007): 4788. http://dx.doi.org/10.2741/2427.
Bross, Linda, Masamichi Muramatsu, Kazuo Kinoshita, Tasuku Honjo, and Heinz Jacobs. "DNA Double-Strand Breaks." Journal of Experimental Medicine 195, no. 9 (May 6, 2002): 1187–92. http://dx.doi.org/10.1084/jem.20011749.
Bolden, A. H., C. M. Nalin, C. A. Ward, M. S. Poonian, and A. Weissbach. "Primary DNA sequence determines sites of maintenance and de novo methylation by mammalian DNA methyltransferases." Molecular and Cellular Biology 6, no. 4 (April 1986): 1135–40. http://dx.doi.org/10.1128/mcb.6.4.1135-1140.1986.
Bolden, A. H., C. M. Nalin, C. A. Ward, M. S. Poonian, and A. Weissbach. "Primary DNA sequence determines sites of maintenance and de novo methylation by mammalian DNA methyltransferases." Molecular and Cellular Biology 6, no. 4 (April 1986): 1135–40. http://dx.doi.org/10.1128/mcb.6.4.1135.
Rogers, W. Benjamin, and Vinothan N. Manoharan. "Programming colloidal phase transitions with DNA strand displacement." Science 347, no. 6222 (February 5, 2015): 639–42. http://dx.doi.org/10.1126/science.1259762.
Giannattasio, Michele, and Dana Branzei. "DNA Replication Through Strand Displacement During Lagging Strand DNA Synthesis in Saccharomyces cerevisiae." Genes 10, no. 2 (February 21, 2019): 167. http://dx.doi.org/10.3390/genes10020167.