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Journal articles on the topic 'DNA repair'

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Published: 4 June 2021
Last updated: 29 July 2024

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1

Sánchez-Pérez, Isabel, and Rosario Perona Abellón. "DNA repair." Revista de Oncología 3, no. 4 (July 2001): 224–27. http://dx.doi.org/10.1007/bf02712696.

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2

Myles, Gary M., and Aziz Sancar. "DNA repair." Chemical Research in Toxicology 2, no. 4 (July 1989): 197–226. http://dx.doi.org/10.1021/tx00010a001.

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3

Jacquet, Karine, and Jacques Côté. "DNA repair." Cell Cycle 13, no. 7 (February 28, 2014): 1059. http://dx.doi.org/10.4161/cc.28383.

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4

Fleck, O. "DNA repair." Journal of Cell Science 117, no. 4 (February 15, 2004): 515–17. http://dx.doi.org/10.1242/jcs.00952.

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5

Zhang, Yanbin, and Feng Gong. "DNA repair." Methods 48, no. 1 (May 2009): 1–2. http://dx.doi.org/10.1016/j.ymeth.2009.05.001.

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6

Barnes, Deborah E., Tomas Lindahl, and Barbara Sedgwick. "DNA repair." Current Opinion in Cell Biology 5, no. 3 (June 1993): 424–33. http://dx.doi.org/10.1016/0955-0674(93)90007-d.

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7

Ujhazy, Peter, and David Stewart. "DNA Repair." Journal of Thoracic Oncology 4, no. 11 (November 2009): S1068—S1070. http://dx.doi.org/10.1097/01.jto.0000361754.25037.2c.

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8

Carell, Thomas. "DNA Repair." Angewandte Chemie International Edition 54, no. 51 (November 19, 2015): 15330–33. http://dx.doi.org/10.1002/anie.201509770.

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9

Howard-Flanders, Paul. "DNA repair." Trends in Biochemical Sciences 10, no. 9 (September 1985): 370. http://dx.doi.org/10.1016/0968-0004(85)90122-7.

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10

Van De Putte, P. "The DNA repair manual DNA repair and mutagenesis." Trends in Biochemical Sciences 20, no. 10 (October 1995): 440. http://dx.doi.org/10.1016/s0968-0004(00)89096-9.

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11

Enderle, Janina, Annika Dorn, and Holger Puchta. "DNA- and DNA-Protein-Crosslink Repair in Plants." International Journal of Molecular Sciences 20, no. 17 (September 3, 2019): 4304. http://dx.doi.org/10.3390/ijms20174304.

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DNA-crosslinks are one of the most severe types of DNA lesions. Crosslinks (CLs) can be subdivided into DNA-intrastrand CLs, DNA-interstrand CLs (ICLs) and DNA-protein crosslinks (DPCs), and arise by various exogenous and endogenous sources. If left unrepaired before the cell enters S-phase, ICLs and DPCs pose a major threat to genomic integrity by blocking replication. In order to prevent the collapse of replication forks and impairment of cell division, complex repair pathways have emerged. In mammals, ICLs are repaired by the so-called Fanconi anemia (FA) pathway, which includes 22 different FANC genes, while in plants only a few of these genes are conserved. In this context, two pathways of ICL repair have been defined, each requiring the interaction of a helicase (FANCJB/RTEL1) and a nuclease (FAN1/MUS81). Moreover, homologous recombination (HR) as well as postreplicative repair factors are also involved. Although DPCs possess a comparable toxic potential to cells, it has only recently been shown that at least three parallel pathways for DPC repair exist in plants, defined by the protease WSS1A, the endonuclease MUS81 and tyrosyl-DNA phosphodiesterase 1 (TDP1). The importance of crosslink repair processes are highlighted by the fact that deficiencies in the respective pathways are associated with diverse hereditary disorders.
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12

Stingele, Julian, Bianca Habermann, and Stefan Jentsch. "DNA–protein crosslink repair: proteases as DNA repair enzymes." Trends in Biochemical Sciences 40, no. 2 (February 2015): 67–71. http://dx.doi.org/10.1016/j.tibs.2014.10.012.

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13

Cunningham, Richard P. "DNA repair: How yeast repairs radical damage." Current Biology 6, no. 10 (October 1996): 1230–33. http://dx.doi.org/10.1016/s0960-9822(96)00703-8.

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14

Gehring, Mary, Wolf Reik, and Steven Henikoff. "DNA demethylation by DNA repair." Trends in Genetics 25, no. 2 (February 2009): 82–90. http://dx.doi.org/10.1016/j.tig.2008.12.001.

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15

Downes, C. S., and R. T. Johnson. "DNA topoisomerases and DNA repair." BioEssays 8, no. 6 (June 1988): 179–84. http://dx.doi.org/10.1002/bies.950080602.

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16

Zhao, Lei, Chengyu Bao, Yuxuan Shang, Xinye He, Chiyuan Ma, Xiaohua Lei, Dong Mi, and Yeqing Sun. "The Determinant of DNA Repair Pathway Choices in Ionising Radiation-Induced DNA Double-Strand Breaks." BioMed Research International 2020 (August 25, 2020): 1–12. http://dx.doi.org/10.1155/2020/4834965.

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Ionising radiation- (IR-) induced DNA double-strand breaks (DSBs) are considered to be the deleterious DNA lesions that pose a serious threat to genomic stability. The major DNA repair pathways, including classical nonhomologous end joining, homologous recombination, single-strand annealing, and alternative end joining, play critical roles in countering and eliciting IR-induced DSBs to ensure genome integrity. If the IR-induced DNA DSBs are not repaired correctly, the residual or incorrectly repaired DSBs can result in genomic instability that is associated with certain human diseases. Although many efforts have been made in investigating the major mechanisms of IR-induced DNA DSB repair, it is still unclear what determines the choices of IR-induced DNA DSB repair pathways. In this review, we discuss how the mechanisms of IR-induced DSB repair pathway choices can operate in irradiated cells. We first briefly describe the main mechanisms of the major DNA DSB repair pathways and the related key repair proteins. Based on our understanding of the characteristics of IR-induced DNA DSBs and the regulatory mechanisms of DSB repair pathways in irradiated cells and recent advances in this field, We then highlight the main factors and associated challenges to determine the IR-induced DSB repair pathway choices. We conclude that the type and distribution of IR-induced DSBs, chromatin state, DNA-end structure, and DNA-end resection are the main determinants of the choice of the IR-induced DNA DSB repair pathway.
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17

Baldwin, Michael R., Suzanne J. Admiraal, and Patrick J. O'Brien. "Transient kinetic analysis of oxidative dealkylation by the direct reversal DNA repair enzyme AlkB." Journal of Biological Chemistry 295, no. 21 (April 13, 2020): 7317–26. http://dx.doi.org/10.1074/jbc.ra120.013517.

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AlkB is a bacterial Fe(II)– and 2-oxoglutarate–dependent dioxygenase that repairs a wide range of alkylated nucleobases in DNA and RNA as part of the adaptive response to exogenous nucleic acid–alkylating agents. Although there has been longstanding interest in the structure and specificity of Escherichia coli AlkB and its homologs, difficulties in assaying their repair activities have limited our understanding of their substrate specificities and kinetic mechanisms. Here, we used quantitative kinetic approaches to determine the transient kinetics of recognition and repair of alkylated DNA by AlkB. These experiments revealed that AlkB is a much faster alkylation repair enzyme than previously reported and that it is significantly faster than DNA repair glycosylases that recognize and excise some of the same base lesions. We observed that whereas 1,N6-ethenoadenine can be repaired by AlkB with similar efficiencies in both single- and double-stranded DNA, 1-methyladenine is preferentially repaired in single-stranded DNA. Our results lay the groundwork for future studies of AlkB and its human homologs ALKBH2 and ALKBH3.
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18

Kurtoğlu, Elçin Latife, and İbrahim Tekedereli. "DNA Repair Mechanisms." Balıkesır Health Sciences Journal 4, no. 3 (2015): 169–77. http://dx.doi.org/10.5505/bsbd.2015.52523.

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19

Chakarov, Stoyan, Rumena Petkova, and George Russev. "DNA repair systems." BioDiscovery, no. 13 (September 22, 2014): 2. http://dx.doi.org/10.7750/biodiscovery.2014.13.2.

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20

David, Rachel. "Limiting DNA repair." Nature Reviews Microbiology 11, no. 8 (July 16, 2013): 510–11. http://dx.doi.org/10.1038/nrmicro3078.

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21

Sancar, Aziz, and Gwndolyn B. Sancar. "DNA Repair Enzymes." Annual Review of Biochemistry 57, no. 1 (June 1988): 29–67. http://dx.doi.org/10.1146/annurev.bi.57.070188.000333.

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22

Sancar, Aziz. "DNA Excision Repair." Annual Review of Biochemistry 65, no. 1 (June 1996): 43–81. http://dx.doi.org/10.1146/annurev.bi.65.070196.000355.

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23

Kunkel, Thomas A., and Dorothy A. Erie. "DNA MISMATCH REPAIR." Annual Review of Biochemistry 74, no. 1 (June 2005): 681–710. http://dx.doi.org/10.1146/annurev.biochem.74.082803.133243.

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24

Vinson, Valda. "Activating DNA repair." Science 355, no. 6324 (February 2, 2017): 490.11–492. http://dx.doi.org/10.1126/science.355.6324.490-k.

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25

Berthet, Nathalie, Didier Boturyn, and Jean-François Constant. "DNA repair inhibitors." Expert Opinion on Therapeutic Patents 9, no. 4 (April 1999): 401–15. http://dx.doi.org/10.1517/13543776.9.4.401.

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26

Toma, Tudor. "Divine DNA repair." Genome Biology 3 (2002): spotlight—20020328–01. http://dx.doi.org/10.1186/gb-spotlight-20020328-01.

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27

Riddihough, Guy. "Regulating DNA Repair." Science 344, no. 6179 (April 3, 2014): 11.3–11. http://dx.doi.org/10.1126/science.344.6179.11-c.

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28

FRITZ, HANS-JOACHIM, RAINER MERKL, and MANFRED KRÖGER. "Biased DNA repair." Nature 355, no. 6361 (February 1992): 595–96. http://dx.doi.org/10.1038/355595b0.

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29

Doherty, Rachel, and Srinivasan Madhusudan. "DNA Repair Endonucleases." Journal of Biomolecular Screening 20, no. 7 (April 15, 2015): 829–41. http://dx.doi.org/10.1177/1087057115581581.

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Genomic DNA is constantly exposed to endogenous and exogenous damaging agents. To overcome these damaging effects and maintain genomic stability, cells have robust coping mechanisms in place, including repair of the damaged DNA. There are a number of DNA repair pathways available to cells dependent on the type of damage induced. The removal of damaged DNA is essential to allow successful repair. Removal of DNA strands is achieved by nucleases. Exonucleases are those that progressively cut from DNA ends, and endonucleases make single incisions within strands of DNA. This review focuses on the group of endonucleases involved in DNA repair pathways, their mechanistic functions, roles in cancer development, and how targeting these enzymes is proving to be an exciting new strategy for personalized therapy in cancer.
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30

Jackson, Stephen P., and Thomas Helleday. "Drugging DNA repair." Science 352, no. 6290 (June 2, 2016): 1178–79. http://dx.doi.org/10.1126/science.aab0958.

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31

Jasny, B. R. "Resolving DNA Repair." Science 326, no. 5951 (October 15, 2009): 340. http://dx.doi.org/10.1126/science.326_340b.

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32

Tutt, A. "Targeting DNA repair." Breast 32 (March 2017): S9. http://dx.doi.org/10.1016/s0960-9776(17)30074-7.

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33

Tutt, A. "Targeting DNA repair." Breast 44 (March 2019): S6. http://dx.doi.org/10.1016/s0960-9776(19)30077-3.

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34

Myers, Lawrence C., and Gregory L. Verdine. "DNA repair proteins." Current Opinion in Structural Biology 4, no. 1 (January 1994): 51–59. http://dx.doi.org/10.1016/s0959-440x(94)90059-0.

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35

Vassylyev, Dmitry G., and Kosuke Morikawa. "DNA-repair enzymes." Current Opinion in Structural Biology 7, no. 1 (February 1997): 103–9. http://dx.doi.org/10.1016/s0959-440x(97)80013-9.

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36

Hopfner, Karl-Peter, and John A. Tainer. "DNA Mismatch Repair." Structure 8, no. 12 (December 2000): R237—R241. http://dx.doi.org/10.1016/s0969-2126(00)00545-1.

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37

Kaina, Bernd. "DNA repair systems." Toxicology Letters 164 (September 2006): S320. http://dx.doi.org/10.1016/j.toxlet.2006.07.328.

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38

Hoeijmakers, J. H. J. "DNA repair mechanisms." Maturitas 38, no. 1 (February 2001): 17–22. http://dx.doi.org/10.1016/s0378-5122(00)00188-2.

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39

Rao, D. N., and Yedu Prasad. "DNA repair systems." Resonance 21, no. 10 (October 2016): 925–36. http://dx.doi.org/10.1007/s12045-016-0401-x.

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40

Riddihough, G. "Dissecting DNA Repair." Science Signaling 5, no. 224 (May 15, 2012): ec140-ec140. http://dx.doi.org/10.1126/scisignal.2003215.

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41

Kemp, Michael G., and Aziz Sancar. "DNA excision repair." Cell Cycle 11, no. 16 (August 15, 2012): 2997–3002. http://dx.doi.org/10.4161/cc.21126.

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42

Russev, G., and B. Anachkova. "Measuring DNA Repair." Biotechnology & Biotechnological Equipment 23, no. 2 (January 2009): 1162–69. http://dx.doi.org/10.1080/13102818.2009.10817632.

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43

Castro, Elena, Joaquin Mateo, David Olmos, and Johann S. de Bono. "Targeting DNA Repair." Cancer Journal 22, no. 5 (2016): 353–56. http://dx.doi.org/10.1097/ppo.0000000000000219.

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44

&NA;. "DNA repair enzymes." Advances in Anatomic Pathology 2, no. 4 (July 1995): 260. http://dx.doi.org/10.1097/00125480-199507000-00040.

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45

Damia, Giovanna, and Maurizio D’Incalci. "Targeting DNA repair." Drug Discovery Today: Disease Models 9, no. 2 (June 2012): e39-e41. http://dx.doi.org/10.1016/j.ddmod.2012.01.001.

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46

Morikawa, Kosuke. "DNA repair enzymes." Current Opinion in Structural Biology 3, no. 1 (February 1993): 17–23. http://dx.doi.org/10.1016/0959-440x(93)90196-r.

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47

Tainer, John A., Maria M. Thayer, and Richard P. Cunningham. "DNA repair proteins." Current Opinion in Structural Biology 5, no. 1 (February 1995): 20–26. http://dx.doi.org/10.1016/0959-440x(95)80005-l.

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48

Marti, T. M., and O. Fleck. "DNA repair nucleases." Cellular and Molecular Life Sciences (CMLS) 61, no. 3 (February 1, 2004): 336–54. http://dx.doi.org/10.1007/s00018-003-3223-4.

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49

Deering, Reginald A. "DNA repair inDictyostelium." Developmental Genetics 9, no. 4-5 (1988): 483–93. http://dx.doi.org/10.1002/dvg.1020090425.

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50

Collins, A. "DNA Repair Protocols." Cell Biology International 23, no. 9 (September 1999): 650. http://dx.doi.org/10.1006/cbir.1999.0447.

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