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Journal articles on the topic 'DNA model'

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Published: 4 June 2021
Last updated: 9 February 2022

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1

Frank-Kamenetskii, M. D., V. V. Anshelevich, and A. V. Lukashin. "Polyelectrolyte model of DNA." Uspekhi Fizicheskih Nauk 151, no. 4 (1987): 595. http://dx.doi.org/10.3367/ufnr.0151.198704b.0595.

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2

Handelsman, Jo. "Call for Papers: Unique Model Systems." DNA and Cell Biology 27, no. 6 (June 2008): 287. http://dx.doi.org/10.1089/dna.2008.1504.

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3

Frank-Kamenetskiĭ, M. D., V. V. Anshelevich, and A. V. Lukashin. "Polyelectrolyte model of DNA." Soviet Physics Uspekhi 30, no. 4 (April 30, 1987): 317–30. http://dx.doi.org/10.1070/pu1987v030n04abeh002833.

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4

Davies, S. W., and D. A. Seale. "DNA Microarray Stochastic Model." IEEE Transactions on Nanobioscience 4, no. 3 (September 2005): 248–54. http://dx.doi.org/10.1109/tnb.2005.853665.

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5

Middleton, James. "Handy DNA Nucleotide Model." American Biology Teacher 81, no. 3 (March 1, 2019): 193–96. http://dx.doi.org/10.1525/abt.2019.81.3.193.

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A readily available resource to create a model for the study of DNA is the human hand. Students can recognize how structure and function of nucleotides determine structure and function of the DNA molecule by labeling parts of a gloved hand with the parts of a DNA molecule.
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6

Alireza, Sepehri, Shoorvazi Somayyeh, and Moradi Marjaneh Aliakbar. "Calculating the Specific Heat of DNA by using Phononic Model." Greener Journal of Biological Sciences 3, no. 5 (July 13, 2013): 187–91. http://dx.doi.org/10.15580/gjbs.2013.5.051613617.

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7

Kelchner, Scot A. "Phylogenetic models and model selection for noncoding DNA." Plant Systematics and Evolution 282, no. 3-4 (July 30, 2008): 109–26. http://dx.doi.org/10.1007/s00606-008-0071-6.

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8

XU, Jin, and Yue-Ke FAN. "Classical Ramsey Number DNA Computing Model (Ⅱ): Add-Bit-Sequence DNA computing Model." Chinese Journal of Computers 31, no. 12 (October 16, 2009): 2081–89. http://dx.doi.org/10.3724/sp.j.1016.2008.02081.

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9

ZHAO, YUQI, and HOWARD B. LIEBERMAN. "Schizosaccharomyces pombe:A Model for Molecular Studies of Eukaryotic Genes." DNA and Cell Biology 14, no. 5 (May 1995): 359–71. http://dx.doi.org/10.1089/dna.1995.14.359.

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10

Mohamad, Abdul Adheem, and Tsukasa Yashiro. "A TOPOLOGICAL MODEL OF DNA REPLICATION WITH DNA-LINKS." Far East Journal of Mathematical Sciences (FJMS) 107, no. 1 (September 27, 2018): 241–55. http://dx.doi.org/10.17654/ms107010241.

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11

Wang, Zicheng, Jian Ai, Yanfeng Wang, and Guangzhao Cui. "A DNA Logic Model Based on DNA Strand Displacement." Journal of Nanoelectronics and Optoelectronics 12, no. 12 (December 1, 2017): 1343–49. http://dx.doi.org/10.1166/jno.2017.2136.

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12

Pokholenko, I. O., T. G. Titok, O. M. Sukhorada, and T. A. Ruban. "Development of model DNA-vaccine." Biopolymers and Cell 21, no. 3 (May 20, 2005): 270–74. http://dx.doi.org/10.7124/bc.0006f1.

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13

AUGUSTO, Paulo Sergio Pilz, Elso DRIGO FILHO, and Jose Roberto RUGGIERO. "Statistical Model to DNA Melting." Eclética Química 26 (2001): 77–85. http://dx.doi.org/10.1590/s0100-46702001000100006.

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14

TERAMAE, Hiroyuki, and Yuriko AOKI. "Electronic Structure of model-DNA." Journal of Computer Chemistry, Japan 16, no. 5 (2017): 157–59. http://dx.doi.org/10.2477/jccj.2017-0052.

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15

BUD, ROBERT. "Life, DNA and the model." British Journal for the History of Science 46, no. 2 (October 20, 2011): 311–34. http://dx.doi.org/10.1017/s0007087411000653.

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AbstractThis paper argues that the 1953 double-helix solution to the problem of DNA structure was understood, at the time, as a blow within a fiercely fought dispute over the material nature of life. The paper examines the debates, between those for whom life was a purely material phenomenon and religious people for whom it had a spiritual significance, that were waged from the aftermath of the First World War to the 1960s. It looks at the developing arguments of early promoters of molecular biology, including J.D. Bernal, his pupil Max Perutz and his pupil Francis Crick, on the one side, and of the so-called ‘Inkling’ cluster of writers including C.S. Lewis and J.R.R. Tolkien, on the other. This debate was conducted through polemical works, journalism, and science fiction and through the Festival of Britain and can be followed through the commentary of Jacob Bronowski. The paper concludes with the model of the double helix now at the Science Museum, which can be considered an archaeological relic of a battle in a war which is still being fought.
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16

Barbi, Maria, Simona Cocco, and Michel Peyrard. "Helicoidal model for DNA opening." Physics Letters A 253, no. 5-6 (March 1999): 358–69. http://dx.doi.org/10.1016/s0375-9601(99)00059-6.

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17

Hisakado, Masato, and Miki Wadati. "Inhomogenious Model for DNA Dynamics." Journal of the Physical Society of Japan 64, no. 4 (April 15, 1995): 1098–103. http://dx.doi.org/10.1143/jpsj.64.1098.

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18

Keller, David J., and James A. Brozik. "Framework Model for DNA Polymerases†." Biochemistry 44, no. 18 (May 2005): 6877–88. http://dx.doi.org/10.1021/bi0477079.

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19

Cuesta-López, S., M. Peyrard, and D. J. Graham. "Model for DNA hairpin denaturation." European Physical Journal E 16, no. 3 (February 22, 2005): 235–46. http://dx.doi.org/10.1140/epje/e2005-00026-9.

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20

Dršata, Tomáš, Marie Zgarbová, Naďa Špačková, Petr Jurečka, Jiří Šponer, and Filip Lankaš. "Mechanical Model of DNA Allostery." Journal of Physical Chemistry Letters 5, no. 21 (October 21, 2014): 3831–35. http://dx.doi.org/10.1021/jz501826q.

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21

Zhang, Fei, and Michael A. Collins. "Model simulations of DNA dynamics." Physical Review E 52, no. 4 (October 1, 1995): 4217–24. http://dx.doi.org/10.1103/physreve.52.4217.

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22

Allegrini, P., M. Barbi, P. Grigolini, and B. J. West. "Dynamical model for DNA sequences." Physical Review E 52, no. 5 (November 1, 1995): 5281–96. http://dx.doi.org/10.1103/physreve.52.5281.

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23

Kikot, I. P., A. V. Savin, E. A. Zubova, M. A. Mazo, E. B. Gusarova, L. I. Manevitch, and A. V. Onufriev. "New coarse-grained DNA model." Biophysics 56, no. 3 (June 2011): 387–92. http://dx.doi.org/10.1134/s0006350911030109.

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24

Sepehri, Alireza. "A mathematical model for DNA." International Journal of Geometric Methods in Modern Physics 14, no. 11 (October 23, 2017): 1750152. http://dx.doi.org/10.1142/s0219887817501523.

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Recently, some authors have shown that a DNA molecule produces electromagnetic signals and communicates with other DNA molecules or other molecules. In fact, a DNA acts like a receiver or transmitter of radio waves. In this paper, we suggest a mathematical model for the DNA molecule and use of its communication to cure some diseases like cancer. In this model, first, by using concepts from string theory and M-theory, we calculate the energy of a DNA in terms of interactions between free electrons and bound electrons. We show that when a DNA is damaged, its energy changes and an extra current is produced. This extra current causes the electromagnetic signals of a damaged DNA molecule to be different when compared to the electromagnetic signals of a normal DNA molecule. The electromagnetic signals of a damaged DNA molecule induce an extra current in a normal DNA molecule and lead to its destruction. By sending crafted electromagnetic signals to normal DNA molecules and inducing an opposite current with respect to this extra current, we can prevent the destruction of normal DNA. Finally, we argue that the type of packing of DNA in chromosomes of men and women is different. This causes radiated waves from DNAs of men and women to have opposite signs and cancel the effect of each other in a pair. Using this property, we suggest another mechanism to cancel the effect of extra waves, which are produced by DNAs in cancer cells of a male or a female, by extra waves which are produced by DNAs in similar cells of a female or a male and prevent the progression of the disease.
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25

Suciu, D. "Topological DNA target size model." Radiation and Environmental Biophysics 29, no. 3 (September 1990): 203–11. http://dx.doi.org/10.1007/bf01210523.

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26

Manning, Gerald S. "Packaged DNA: an elastic model." Cell Biophysics 8, no. 1 (February 1986): 86. http://dx.doi.org/10.1007/bf02788462.

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27

Resende, B. C., A. B. Rebelato, V. D'Afonseca, A. R. Santos, T. Stutzman, V. A. Azevedo, L. L. Santos, A. Miyoshi, and D. O. Lopes. "DNA repair in Corynebacterium model." Gene 482, no. 1-2 (August 2011): 1–7. http://dx.doi.org/10.1016/j.gene.2011.03.008.

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28

Wadati, Miki, and Hideo Tsuru. "Elastic model of looped DNA." Physica D: Nonlinear Phenomena 21, no. 2-3 (September 1986): 213–26. http://dx.doi.org/10.1016/0167-2789(86)90002-3.

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29

Huai, Bin, Hai Cheng Yang, and Neng Wan. "The Process DNA Model of Significant Model Project." Applied Mechanics and Materials 121-126 (October 2011): 504–8. http://dx.doi.org/10.4028/www.scientific.net/amm.121-126.504.

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To solve the problem of “two command line” existing in the significant model project management at present, this paper proposes a method of process DNA-based process management for significant model project. First, the technology process and management process of significant model project are analyzed. Second, the process DNA double-strand of significant model project is constructed employing the elements of technology and management as building blocks; and also, the two-level structure of the process DNA double-strand is analyzed. Third, the process DNA model of significant model project is established and the related formal definitions are given.
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30

TING, SOLOMON J. Y. "A Binary Model of Repetitive DNA Sequence in Caenorhabditis elegans." DNA and Cell Biology 14, no. 1 (January 1995): 83–85. http://dx.doi.org/10.1089/dna.1995.14.83.

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31

ELASAN, Sadi, Sıddık KESKİN, and Elif ARI. "Correlated Component Regression: Application On Model To Determination Of Dna Damage." Turkiye Klinikleri Journal of Biostatistics 8, no. 1 (2016): 45–52. http://dx.doi.org/10.5336/biostatic.2015-48311.

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32

Kim, Eun-Gyeong, and Sang-Yong Lee. "A DNA Sequence Generation Algorithm for Traveling Salesman Problem using DNA Computing with Evolution Model." Journal of Korean Institute of Intelligent Systems 16, no. 2 (April 1, 2006): 222–27. http://dx.doi.org/10.5391/jkiis.2006.16.2.222.

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33

Markovitsi, Dimitra, Thomas Gustavsson, and Ignacio Vayá. "Fluorescence of DNA Duplexes: From Model Helices to Natural DNA." Journal of Physical Chemistry Letters 1, no. 22 (November 3, 2010): 3271–76. http://dx.doi.org/10.1021/jz101122t.

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34

Vora, Robin A., Anthony E. Pegg, and Steven E. Ealick. "A new model for howO6-methylguanine-DNA methyltransferase binds DNA." Proteins: Structure, Function, and Genetics 32, no. 1 (July 1, 1998): 3–6. http://dx.doi.org/10.1002/(sici)1097-0134(19980701)32:1<3::aid-prot2>3.0.co;2-o.

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35

Banfalvi, Gaspar. "Chromatin Fiber Structure and Plectonemic Model of Chromosome Condensation in Drosophila Cells." DNA and Cell Biology 27, no. 2 (February 2008): 65–70. http://dx.doi.org/10.1089/dna.2007.0671.

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36

Sharma, Neel Kamal, Suresh Kumar Sharma, Amod Gupta, Sudesh Prabhakar, Ramandeep Singh, and Akshay Anand. "Predictive Model for Earlier Diagnosis of Suspected Age-Related Macular Degeneration Patients." DNA and Cell Biology 32, no. 9 (September 2013): 549–55. http://dx.doi.org/10.1089/dna.2013.2072.

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37

Cabiati, Manuela, Benedetta Svezia, Maria Angela Guzzardi, Letizia Mattii, Andrea D'Amico, Chiara Caselli, Tommaso Prescimone, Maria Aurora Morales, and Silvia Del Ry. "Adenosine Receptor Transcriptomic Profile in Cardiac Tissue of a Zucker Rat Model." DNA and Cell Biology 34, no. 5 (May 2015): 333–41. http://dx.doi.org/10.1089/dna.2014.2770.

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38

THANH NGO, V., and N. A. VIET. "EPB MODEL OF DNA AND THERMODYNAMIC EFFECTIVE BIO TIME." Modern Physics Letters B 25, no. 12n13 (May 30, 2011): 1151–55. http://dx.doi.org/10.1142/s0217984911026863.

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Using the simple EPB model1 of DNA (the combined model of the pendulum model of Englander,2 and Peyrard–Bishop microscopic model3), we propose a bio (DNA) time measured by EPB pendulum. We have shown that the effective bio time has a thermodynamic origin which equals the ordinary (real) time in the range of room-body temperature. Furthermore, it flows slower at low temperature and much faster near the DNA melting phase transition temperature than real time.
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39

JIN, JIA-RUI, PING WEN, and JOSEPH LOCKER. "Enhancer Sharing in a Plasmid Model Containing the α-Fetoprotein and Albumin Promoters." DNA and Cell Biology 14, no. 3 (March 1995): 267–72. http://dx.doi.org/10.1089/dna.1995.14.267.

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40

Malonga, Herman, Jean-Francois Neault, and Heidar-Ali Tajmir-Riahi. "Transfer RNA Binding to Human Serum Albumin: A Model for Protein–RNA Interaction." DNA and Cell Biology 25, no. 7 (July 2006): 393–98. http://dx.doi.org/10.1089/dna.2006.25.393.

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41

Dutt, Kamla, and Ifeoma Ezeonu. "Human Retinal and Brain Cell Lines: A Model of HCMV Retinitis and Encephalitis." DNA and Cell Biology 25, no. 10 (October 2006): 581–96. http://dx.doi.org/10.1089/dna.2006.25.581.

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42

Galup, Stuart D., Ronald Dattero, and Jayne Groll. "DNA Model of IT Service Assets." International Journal of Service Science, Management, Engineering, and Technology 2, no. 2 (April 2011): 16–47. http://dx.doi.org/10.4018/jssmet.2011040102.

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In this paper, the service assets (resources and capabilities) associated with Information Technology (IT) services are investigated through a DNA (Dynamic Network Analysis) model. An illustrative example for IT services is analyzed using the model. Specifically discussed are the relationships among Agents, the Knowledge and Resources that Agents require to perform their job Role, and the Tasks that the Agents perform during the execution of their job Role. Selected resulting metrics are detailed and the managerial implications are presented for improving the efficiency and effectiveness of organizational process.
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43

Cox, Jonathan P. L. "A Unique Demonstration Model of DNA." Journal of Chemical Education 83, no. 9 (September 2006): 1319. http://dx.doi.org/10.1021/ed083p1319.

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44

ARQUES, D., and C. MICHEL. "A model of DNA sequence evolution." Bulletin of Mathematical Biology 52, no. 6 (1990): 741–72. http://dx.doi.org/10.1016/s0092-8240(05)80383-0.

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45

Ogawa, Anthony K., Osama K. Abou-Zied, Vickie Tsui, Ralph Jimenez, David A. Case, and Floyd E. Romesberg. "A Phototautomerizable Model DNA Base Pair." Journal of the American Chemical Society 122, no. 41 (October 2000): 9917–20. http://dx.doi.org/10.1021/ja001778n.

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46

Ren, Wei, Jian Wang, Zhongshui Ma, and Hong Guo. "Dynamical conductance of model DNA sequences." Journal of Chemical Physics 125, no. 16 (October 28, 2006): 164704. http://dx.doi.org/10.1063/1.2359447.

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47

Balaeff, Alexander, L. Mahadevan, Guochun Shi, and Klaus Schulten. "Elastic Rod Model of DNA Loops." Biochemical Society Transactions 28, no. 5 (October 1, 2000): A446. http://dx.doi.org/10.1042/bst028a446.

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48

XU, Jin. "Sticker DNA computer model ??Part ?: Theory." Chinese Science Bulletin 49, no. 8 (2004): 772. http://dx.doi.org/10.1360/03we196.

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49

XU, Jin. "Sticker DNA computer model?Part?: Application." Chinese Science Bulletin 49, no. 9 (2004): 863. http://dx.doi.org/10.1360/03ww0187.

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50

Resendis-Antonio, O., L. S. Garcia-Colin, and H. Larralde. "A statistical model of DNA denaturation." Physica A: Statistical Mechanics and its Applications 318, no. 3-4 (February 2003): 435–46. http://dx.doi.org/10.1016/s0378-4371(02)01385-7.

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