Academic literature on the topic 'DNA microarrays'
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Journal articles on the topic "DNA microarrays":
Weitzman, Jonathan B. "DNA/DNA microarrays." Genome Biology 2 (2001): spotlight—20010813–03. http://dx.doi.org/10.1186/gb-spotlight-20010813-03.
Hofman, Paul. "DNA Microarrays." Nephron Physiology 99, no. 3 (February 24, 2005): p85—p89. http://dx.doi.org/10.1159/000083764.
Cook, Stuart A., and Anthony Rosenzweig. "DNA Microarrays." Circulation Research 91, no. 7 (October 4, 2002): 559–64. http://dx.doi.org/10.1161/01.res.0000036019.55901.62.
Niemeyer, Christof M., and Dietmar Blohm. "DNA Microarrays." Angewandte Chemie International Edition 38, no. 19 (October 4, 1999): 2865–69. http://dx.doi.org/10.1002/(sici)1521-3773(19991004)38:19<2865::aid-anie2865>3.0.co;2-f.
Biesen, R., and T. Häupl. "DNA-Microarrays." Zeitschrift für Rheumatologie 70, no. 9 (September 30, 2011): 803–8. http://dx.doi.org/10.1007/s00393-011-0869-4.
Whipple, Mark Eliot, and Winston Patrick Kuo. "DNA Microarrays in Otolaryngology-Head and Neck Surgery." Otolaryngology–Head and Neck Surgery 127, no. 3 (September 2002): 196–204. http://dx.doi.org/10.1067/mhn.2002.127383.
Peiffer, Daniel, Ken Cho, and Yongchol Shin. "Xenopus DNA Microarrays." Current Genomics 4, no. 8 (November 1, 2003): 665–72. http://dx.doi.org/10.2174/1389202033490097.
Schofield, W. C. E., J. McGettrick, T. J. Bradley, J. P. S. Badyal, and S. Przyborski. "Rewritable DNA Microarrays." Journal of the American Chemical Society 128, no. 7 (February 2006): 2280–85. http://dx.doi.org/10.1021/ja056367r.
HENRY, CELIA M. "STANDARDIZING DNA MICROARRAYS." Chemical & Engineering News 82, no. 31 (August 2, 2004): 36–39. http://dx.doi.org/10.1021/cen-v082n031.p036.
Paredes, Carlos J., Ryan S. Senger, Iwona S. Spath, Jacob R. Borden, Ryan Sillers, and Eleftherios T. Papoutsakis. "A General Framework for Designing and Validating Oligomer-Based DNA Microarrays and Its Application to Clostridium acetobutylicum." Applied and Environmental Microbiology 73, no. 14 (May 25, 2007): 4631–38. http://dx.doi.org/10.1128/aem.00144-07.
Dissertations / Theses on the topic "DNA microarrays":
Stephens, Nathan W. "A comparison of genetic microarray analyses : a mixed models approach versus the significance analysis of microarrays /." Diss., CLICK HERE for online access, 2006. http://contentdm.lib.byu.edu/ETD/image/etd1604.pdf.
Brunner, Thomas. "Designing oligonucleotides for DNA microarrays /." Zürich : ETH, Eidgenössische Technische Hochschule Zürich, Department of Computer Science, 2003. http://e-collection.ethbib.ethz.ch/show?type=dipl&nr=116.
Smith, Kaleigh. "Towards quality control in DNA microarrays." Thesis, McGill University, 2003. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=79129.
Arrais, Joel Perdiz. "Sistemas de informação para DNA microarrays." Doctoral thesis, Universidade de Aveiro, 2010. http://hdl.handle.net/10773/2232.
O projecto de sequenciação do genoma humano veio abrir caminho para o surgimento de novas áreas transdisciplinares de investigação, como a biologia computacional, a bioinformática e a bioestatística. Um dos resultados emergentes desde advento foi a tecnologia de DNA microarrays, que permite o estudo do perfil da expressão de milhares de genes, quando sujeitos a perturbações externas. Apesar de ser uma tecnologia relativamente consolidada, continua a apresentar um conjunto vasto de desafios, nomeadamente do ponto de vista computacional e dos sistemas de informação. São exemplos a optimização dos procedimentos de tratamento de dados bem como o desenvolvimento de metodologias de interpretação semi-automática dos resultados. O principal objectivo deste trabalho consistiu em explorar novas soluções técnicas para agilizar os procedimentos de armazenamento, partilha e análise de dados de experiências de microarrays. Com esta finalidade, realizou-se uma análise de requisitos associados às principais etapas da execução de uma experiência, tendo sido identificados os principais défices, propostas estratégias de melhoramento e apresentadas novas soluções. Ao nível da gestão de dados laboratoriais, é proposto um LIMS (Laboratory Information Management System) que possibilita a gestão de todos os dados gerados e dos procedimentos realizados. Este sistema integra ainda uma solução que permite a partilha de experiências, de forma a promover a participação colaborativa de vários investigadores num mesmo projecto, mesmo usando LIMS distintos. No contexto da análise de dados, é apresentado um modelo que facilita a integração de algoritmos de processamento e de análise de experiências no sistema desenvolvido. Por fim, é proposta uma solução para facilitar a interpretação biológica de um conjunto de genes diferencialmente expressos, através de ferramentas que integram informação existente em diversas bases de dados biomédicas.
The sequencing of the human genome paved the way for the emergence of new transdisciplinary research areas, such as computational biology, bioinformatics and biostatistics. One example of such is the advent of DNA microarray technology, which allows the study of the expression of thousands of genes when subjected to an external disturbance. Despite being a well-established technology, it continues to present a wide range of challenges, particularly in terms of computing and information systems. Examples include the optimization of procedures for processing data as well as the development of methodologies for semi-automated interpretation of results. The main objective of this study was to explore new technical solutions to streamline the procedures for storing, sharing and analyzing the data from microarray experiments. To this end, it was performed an analysis of the key steps from the experiment, having been identified the major deficits, proposed strategies for improving and presented new solutions. Regarding the management of laboratory data we propose a LIMS (Laboratory Information Management System) that allows the storage of all data generated and procedures performed in the laboratory. This system also includes a solution that enables the sharing of experiments in order to promote collaborative participation of several researchers in the same project, even using different LIMS. In the context of data analysis, it is presented a model that allows the simplified integration of processing and analysis algorithms in the developed system. Finally, it is proposed a solution to facilitate the biological interpretation of a set of differentially expressed genes, using tools that integrate information from several public biomedical databases.
Harness, Denise. "A Comparison of Unsupervised Methods for DNA Microarray Leukemia Data." Digital Commons @ East Tennessee State University, 2018. https://dc.etsu.edu/asrf/2018/schedule/106.
Chow, Brian 1978. "Photoelectromechanical synthesis of low-cost DNA microarrays." Thesis, Massachusetts Institute of Technology, 2008. http://hdl.handle.net/1721.1/42405.
Includes bibliographical references.
Recent advances in de novo gene synthesis, library construction, and genomic selection for target sequencing using DNA from custom microarrays have demonstrated that microarrays can effectively be used as the world's cheapest sources of complex oligonucleotide pools. Unfortunately, commercial custom microarrays are expensive and not easily accessible to academic researchers, and technical challenges still exist for dealing with the small amount of DNA synthesized on a chip. Genomic research would certainly benefit from the creation of cheaper custom microarrays with larger oligonucleotide concentrations per spot. This thesis presents the development of a novel DNA microarray synthesis platform based on semiconductor photoelectrochemistry (PEC) designed with these needs in mind. An amorphous silicon photoconductor is activated by an optical projection system to create "virtual electrodes" that electrochemically generate protons in a site-selective manner, thereby cleaving acid-labile dimethoxytrityl protecting groups with the spatial selectivity that is required for in-situ DNA synthesis. This platform has the potential to be particularly low-cost since it employs standard phosphoramidite reagents, visible wavelength optics, and a cheaply microfabricated and reusable substrate. By incorporating a porous thin-film glass that dramatically increases the DNA quantity produced by over an order of magnitude per chip, this platform may also simplify the handling of DNA cleaved from chip and drive down the cost per base synthesized. The hybridization detection of single-base errors was successfully demonstrated on PEC synthesized microarrays. This thesis also reports a suite of new surface chemistries and high-resolution techniques for patterning biological molecules.
by Brian Yichiun Chow.
Ph.D.
Horschinek, Andreas. "DNA-Microarrays zur therapiebegleitenden Prognose bei Brustkrebs." [S.l. : s.n.], 2006. http://nbn-resolving.de/urn:nbn:de:bsz:93-opus-27654.
Xue, Mei. "Array based integrated DNA identification system for genetic chip application /." View Abstract or Full-Text, 2002. http://library.ust.hk/cgi/db/thesis.pl?ELEC%202002%20XUE.
Peeters, Justine Kate. "Microarray bioinformatics and applications in oncology." [S.l.] : Rotterdam : [The Author] ; Erasmus University [Host], 2008. http://hdl.handle.net/1765/12618.
Karanam, Suresh Kumar. "Automation of comparative genomic promoter analysis of DNA microarray datasets." Thesis, Available online, Georgia Institute of Technology, 2004:, 2003. http://etd.gatech.edu/theses/available/etd-04062004-164658/unrestricted/karanam%5Fsuresh%5Fk%5F200312%5Fms.pdf.
Books on the topic "DNA microarrays":
Campbell, Marissa J. DNA microarrays, synthesis, and synthetic DNA. Hauppauge, N.Y: Nova Science, 2011.
Muller, Hans-Joachim. Microarrays. Burlington, MA: Elsevier Academic Press, 2005.
Andreas, Bosio, and Gerstmayer Bernhard, eds. Microarrays in inflammation. Basel: Birkhäuser, 2008.
Muller, Hans-Joachim. Microarrays. Burlington, MA: Elsevier Academic Press, 2006.
Knudsen, Steen. Cancer Diagnostics with DNA Microarrays. New York: John Wiley & Sons, Ltd., 2006.
Dufva, Martin, ed. DNA Microarrays for Biomedical Research. Totowa, NJ: Humana Press, 2009. http://dx.doi.org/10.1007/978-1-59745-538-1.
Knudsen, Steen. Cancer Diagnostics with DNA Microarrays. Hoboken, NJ, USA: John Wiley & Sons, Inc., 2005. http://dx.doi.org/10.1002/0470041102.
Jordan, B. R., ed. DNA Microarrays: Gene Expression Applications. Berlin, Heidelberg: Springer Berlin Heidelberg, 2001. http://dx.doi.org/10.1007/978-3-642-56517-5.
Baldi, Pierre. DNA microarrays and gene expression. New York: Cambridge University Press, 2002.
Matsunaga, Tadashi. DNA chippu ōyō gijutsu: DNA chips and it's applications. Tōkyō: Shīemushī, 2000.
Book chapters on the topic "DNA microarrays":
Dufva, Martin, and Claus B. V. Christensen. "Optimization of Oligonucleotide DNA Microarrays." In Microarrays, 93–103. Totowa, NJ: Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-303-5_4.
Deisingh, Anil K., Adilah Guiseppi-Wilson, and Anthony Guiseppi-Elie. "Biochip Platforms for DNA Diagnostics." In Microarrays, 271–97. New York, NY: Springer New York, 2009. http://dx.doi.org/10.1007/978-0-387-72719-6_14.
Nguyen, Bao, and Samuel K. Kassegne. "DNA Microarrays." In Encyclopedia of Microfluidics and Nanofluidics, 628–34. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4614-5491-5_350.
Nguyen, Bao, and Samuel K. Kassegne. "DNA Microarrays." In Encyclopedia of Microfluidics and Nanofluidics, 1–8. Boston, MA: Springer US, 2014. http://dx.doi.org/10.1007/978-3-642-27758-0_350-2.
Bähler, Jürg, and Samuel Marguerat. "DNA Microarrays." In Encyclopedia of Systems Biology, 609–10. New York, NY: Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4419-9863-7_743.
Bier, Frank F., Markus von Nickisch-Rosenegk, Eva Ehrentreich-Förster, Edda Reiß, Jörg Henkel, Rothin Strehlow, and Dennie Andresen. "DNA Microarrays." In Biosensing for the 21st Century, 433–53. Berlin, Heidelberg: Springer Berlin Heidelberg, 2007. http://dx.doi.org/10.1007/10_2007_087.
Nguyen, C., and X. Gidrol. "DNA Microarrays." In Nanoscience, 911–35. Berlin, Heidelberg: Springer Berlin Heidelberg, 2009. http://dx.doi.org/10.1007/978-3-540-88633-4_17.
Shi, Leming, Roger G. Perkins, and Weida Tong. "The Current Status of DNA Microarrays." In Microarrays, 3–24. New York, NY: Springer New York, 2009. http://dx.doi.org/10.1007/978-0-387-72719-6_1.
Pritchard, Clare, Peter Underhill, and Andy Greenfield. "Using DNA Microarrays." In METHODS IN MOLECULAR BIOLOGY™, 605–29. Totowa, NJ: Humana Press, 2008. http://dx.doi.org/10.1007/978-1-60327-483-8_41.
Stoevesandt, Oda, Mingyue He, and Michael J. Taussig. "Protein Microarrays Printed from DNA Microarrays." In Methods in Molecular Biology, 95–106. Totowa, NJ: Humana Press, 2010. http://dx.doi.org/10.1007/978-1-59745-551-0_4.
Conference papers on the topic "DNA microarrays":
Martins, Diogo, Xi Wei, Rastislav Levicky, and Yong-Ak Song. "Accelerating the Mass Transport of DNA Biomolecules Onto DNA Microarray for Enhanced Detection by Electrokinetic Concentration in a Microfluidic Chip." In ASME 2016 5th International Conference on Micro/Nanoscale Heat and Mass Transfer. American Society of Mechanical Engineers, 2016. http://dx.doi.org/10.1115/mnhmt2016-6562.
ESCANDE, DENIS G. "DNA MICROARRAYS AND ARRHYTHMIAS." In Proceedings of the 31st International Congress on Electrocardiology. WORLD SCIENTIFIC, 2005. http://dx.doi.org/10.1142/9789812702234_0079.
Carlon, Enrico. "Thermodynamics of DNA microarrays." In Stochastic Models in Biological Sciences. Warsaw: Institute of Mathematics Polish Academy of Sciences, 2008. http://dx.doi.org/10.4064/bc80-0-13.
Sheikh, Mona A., Olgica Milenkovic, and Richard G. Baraniuk. "Designing Compressive Sensing DNA Microarrays." In 2007 2nd IEEE International Workshop on Computational Advances in Multi-Sensor Adaptive Processing. IEEE, 2007. http://dx.doi.org/10.1109/camsap.2007.4497985.
Turkay, Cagatay, Julius Parulek, and Helwig Hauser. "Dual analysis of DNA microarrays." In the 12th International Conference. New York, New York, USA: ACM Press, 2012. http://dx.doi.org/10.1145/2362456.2362489.
Jacak, Jaroslaw, Jan Hesse, Clemens Hesch, Maria Kasper, Fritz Aberger, Annemarie Frischauf, Max Sonnleitner, Guenter Freudenthaler, Stefan Howorka, and Gerhard J. Schuetz. "Ultrasensitive DNA detection on microarrays." In Biomedical Optics 2005, edited by Dan V. Nicolau, Joerg Enderlein, Robert C. Leif, Daniel L. Farkas, and Ramesh Raghavachari. SPIE, 2005. http://dx.doi.org/10.1117/12.590476.
Hong, Bong Jin, and Joon Won Park. "DNA microarrays on a mesospaced surface." In Optics East, edited by M. Saif Islam and Achyut K. Dutta. SPIE, 2004. http://dx.doi.org/10.1117/12.569677.
Dai, Wei, Olgica Milenkovic, Mona A. Sheikh, and Richard G. Baraniuk. "Probe Design for Compressive Sensing DNA Microarrays." In 2008 IEEE International Conference on Bioinformatics and Biomedicine. IEEE, 2008. http://dx.doi.org/10.1109/bibm.2008.56.
Parikh, Samir, Glenn Gulak, and Paul Chow. "A CMOS Image Sensor for DNA Microarrays." In 2007 IEEE 29th Custom Integrated Circuits Conference. IEEE, 2007. http://dx.doi.org/10.1109/cicc.2007.4405854.
Vikalo, H., F. Parvaresh, S. Misra, and B. Hassibi. "Sparse measurements, compressed sampling, and DNA microarrays." In ICASSP 2008 - 2008 IEEE International Conference on Acoustics, Speech and Signal Processing. IEEE, 2008. http://dx.doi.org/10.1109/icassp.2008.4517676.
Reports on the topic "DNA microarrays":
Beer, N., B. Baker, T. Piggott, S. Maberry, C. Hara, J. DeOtte, W. Benett, E. Mukerjee, J. Dzenitis, and E. Wheeler. Hybridization and Selective Release of DNA Microarrays. Office of Scientific and Technical Information (OSTI), November 2011. http://dx.doi.org/10.2172/1033734.
Martin, Jennifer A., Yaroslav Chushak, Jorge C. Benavides, Joshua Hagen, and Nancy Kelley-Loughnane. DNA Microarrays for Aptamer Identification and Structural Characterization. Fort Belvoir, VA: Defense Technical Information Center, September 2012. http://dx.doi.org/10.21236/ada597207.
Gregory Stephanopoulos. Development of DNA Microarrays for Metabolic Pathway and Bioprocess Monitoring. Office of Scientific and Technical Information (OSTI), July 2004. http://dx.doi.org/10.2172/837870.
Ellner, J. J., N. D. Connell, G. Gallagher, and E. Raveche. Use of DNA Microarrays to Identify Diagnostic Signature Transcriptional Profiles for Host Responses to Infectious Agents. Fort Belvoir, VA: Defense Technical Information Center, October 2005. http://dx.doi.org/10.21236/ada449913.
Ellner, Jerrold J. Use of DNA Microarrays to Identify Diagnostic Signature Transcription Profiles for Host Responses to Infectious Agents. Fort Belvoir, VA: Defense Technical Information Center, October 2004. http://dx.doi.org/10.21236/ada434780.
Ellner, Jerrold J. Use of DNA Microarrays to Identify Diagnostic Signature Transcriptional Profiles for Host Responses to Infectious Agents. Fort Belvoir, VA: Defense Technical Information Center, October 2003. http://dx.doi.org/10.21236/ada419551.
WERNER-WASHBURNE, MARGARET, and GEORGE S. DAVIDSON. DNA Microarray Technology. Office of Scientific and Technical Information (OSTI), January 2002. http://dx.doi.org/10.2172/791894.
Fromm, A., Avihai Danon, and Jian-Kang Zhu. Genes Controlling Calcium-Enhanced Tolerance to Salinity in Plants. United States Department of Agriculture, March 2003. http://dx.doi.org/10.32747/2003.7585201.bard.
Wu, Chi-Fang, James J. Valdes, Jennifer W. Sekowski, and William E. Bentley. Identification of Multiple Pathogenic Bacteria Using a DNA Microarray. Fort Belvoir, VA: Defense Technical Information Center, October 2002. http://dx.doi.org/10.21236/ada408810.
O'Malley, Karen L. Fundamental Patterns Underlying Neurotoxicity Revealed by DNA Microarray Expression Profiling. Fort Belvoir, VA: Defense Technical Information Center, September 2002. http://dx.doi.org/10.21236/ada409422.