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1

DNA analysis. Philadelphia: Mason Crest Publishers, 2006.

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2

Linacre, Adrian M. T., and Shanan S. Tobe. Wildlife DNA Analysis. Oxford, UK: John Wiley & Sons, Ltd, 2013. http://dx.doi.org/10.1002/9781118496411.

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3

Cupples Connon, Catherine, ed. Forensic DNA Analysis. New York, NY: Springer US, 2023. http://dx.doi.org/10.1007/978-1-0716-3295-6.

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4

Tuimala, Jarno, and M. Minna Laine. DNA microarray data analysis. [Espoo]: CSC - Scientific Computing, 2003.

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5

Sawyer, Sarah. Careers in DNA analysis. New York: Rosen Central, 2008.

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6

Group, Search, ed. Forensic DNA analysis: Issues. Washington, D.C: U.S. Department of Justice, Office of Justice Programs, Bureau of Justice Statistics, 1991.

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7

Belair, Robert R. Forensic DNA analysis: Issues. Washington, D.C: U.S. Dept. of Justice, Office of Justice Programs, Bureau of Justice Statistics, 1991.

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8

Scarlett, Garry, ed. DNA Manipulation and Analysis. New York, NY: Springer US, 2023. http://dx.doi.org/10.1007/978-1-0716-3004-4.

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9

Dubitzky, Werner, Daniel P. Berrar, and Martin Granzow. A practical approach to microarray data analysis. Dordrecht: Springer, 2009.

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10

M, Miyamoto Michael, and Cracraft Joel, eds. Phylogenetic analysis of DNA sequences. New York: Oxford University Press, 1991.

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11

Norah, Rudin, ed. An introduction to forensic DNA analysis. Boca Raton: CRC Press, 1997.

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12

Gene cloning and DNA analysis: An introduction. 6th ed. Hoboken: Wiley-Blackwell, 2010.

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13

Brown, T. A. Gene cloning and DNA analysis: An introduction. 6th ed. Hoboken: Wiley-Blackwell, 2010.

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14

Hamilton, Sue L. DNA analysis: Forensic fluids & follicles. Edina, Minn: ABDO Pub. Co., 2008.

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15

P, Hanna Christopher, and Hornby D, eds. DNA chromatography. Weinheim: Wiley-VCH, 2002.

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16

Lilley, David M. J. 1948- and Dahlberg James, eds. DNA structures. San Diego: Academic Press, 1992.

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17

Keith, Inman, ed. An introduction to forensic DNA analysis. 2nd ed. Boca Raton, Fla: CRC Press, 2002.

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18

David, Posada, ed. Bioinformatics for DNA sequence analysis. New York: Humana Press, 2009.

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19

Lambert, David M. DNA analysis of shore plovers. Wellington, N.Z: Dept. of Conservation, 2000.

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20

Posada, David, ed. Bioinformatics for DNA Sequence Analysis. Totowa, NJ: Humana Press, 2009. http://dx.doi.org/10.1007/978-1-59745-251-9.

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21

Liu, Robin Hui, and Abraham P. Lee, eds. Integrated Biochips for DNA Analysis. New York, NY: Springer New York, 2007. http://dx.doi.org/10.1007/978-0-387-76759-8.

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22

Lee, Ji-Hyun, ed. Morphological Analysis of Cultural DNA. Singapore: Springer Singapore, 2017. http://dx.doi.org/10.1007/978-981-10-2329-3.

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23

Ganji, Gopinath. Computational analysis of catalytic DNA. Ottawa: National Library of Canada, 2002.

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24

David, Posada, ed. Bioinformatics for DNA sequence analysis. New York: Humana Press, 2009.

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25

David, Posada, ed. Bioinformatics for DNA sequence analysis. New York: Humana Press, 2009.

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26

Chemeris, A. V. Sekvenirovanie DNK. Moskva: Nauka, 1999.

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27

McClintock, J. Thomas. Forensic DNA analysis: A laboratory manual. Boca Raton, FL: CRC Press, 2008.

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28

Sharon, Marsh, ed. Pyrosequencing protocols. Totowa, N.J: Humana Press, 2007.

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29

Stockert, Juan C., Jesús Espada, and Alfonso Blázquez-Castro. Functional analysis of DNA and chromatin. New York: Humana Press, 2014.

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30

Microarray analysis. Hoboken, NJ: Wiley-Liss, 2003.

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31

S, Shoemaker Jennifer, Lin Simon M. 1957-, and CAMDA (Conference) (2003), eds. Methods of microarray data analysis IV. New York: Springer, 2005.

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32

Knudsen, Steen. A biologist's guide to analysis of DNA microarray data. New York, NY: Wiley-Liss, 2003.

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33

A biologist's guide to analysis of DNA microarray data. New York: Wiley-Interscience, 2002.

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34

Data analysis tools for DNA microarrays. Boca Raton, FL: Chapman & Hall/CRC, 2003.

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35

Stockert, Juan C., Jesús Espada, and Alfonso Blázquez-Castro, eds. Functional Analysis of DNA and Chromatin. Totowa, NJ: Humana Press, 2014. http://dx.doi.org/10.1007/978-1-62703-706-8.

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36

DNA Analysis. Mason Crest, an Imprint of National Highlights Inc, 2013.

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37

Hunter, William. DNA Analysis. Mason Crest, 2014.

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38

Pilli, Elena, and Andrea Berti. Forensic DNA Analysis. Taylor & Francis Group, 2020.

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39

Shewale, Jaiprakash G., and Ray H. Liu, eds. Forensic DNA Analysis. CRC Press, 2013. http://dx.doi.org/10.1201/b15361.

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40

McClintock, J. Thomas. Forensic DNA Analysis. CRC Press, 2008. http://dx.doi.org/10.4324/9781420063301.

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41

Forensic DNA Analysis. Taylor & Francis Group, 2022.

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42

Liu, Ray H., and Jaiprakash G. Shewale. Forensic DNA Analysis. Taylor & Francis Group, 2021.

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43

Taberlet, Pierre, Aurélie Bonin, Lucie Zinger, and Eric Coissac. DNA metabarcoding data analysis. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0008.

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DNA metabarcoding generates huge amounts of data containing noise introduced by molecular methods. Chapter 8 “DNA metabarcoding data analysis” discusses the analytic steps and available software to curate and evaluate DNA metabarcoding data prior to final ecological analyses. It provides command lines to perform primary analyses of Illumina sequencing data with the OBITools, ranging from read assignment to samples to the formation of molecular operational taxonomic units (MOTUs) and their assignment to a taxon through comparison against reference databases. Chapter 8 also develops several methods to further curate sequencing data from contaminants or dysfunctional PCRs by using DNA extraction, PCR, and sequencing blank controls as well as PCR/biological replicates. It also presents several classical analyses to ensure that the diversity of the sample or the study site is appropriately covered. Finally, this chapter considers what conclusions on biodiversity and ecological processes can be really drawn from metabarcoding data.
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44

Sawyer, Sarah. Careers in DNA Analysis. Rosen Publishing Group, 2008.

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45

Birren, Bruce, ed. Analyzing DNA (Genome Analysis). Cold Spring Harbor Laboratory Press, 1997.

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46

Scarlett, Garry. DNA Manipulation and Analysis. Springer, 2023.

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47

(Editor), Mark D. Adams, Chris Fields (Editor), and J. Craig Venter (Editor), eds. Automated DNA Sequencing and Analysis. Academic Press, 1994.

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48

Staff, Draghici Sorin. Data Analysis Tools: Dna Microarrays. Taylor & Francis Group, 2019.

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49

Ugaz, Victor M. DNA Analysis at the Nanoscale. Taylor & Francis Group, 2014.

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50

Schena, Mark, and Steen Knudsen. Guide to Analysis of DNA Microarray Data, 2nd Edition and Microarray Analysis Set. Wiley-Liss, 2004.

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