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Journal articles on the topic 'Dimensional gel electrophoresis'

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Author: Grafiati

Published: 4 June 2021

Last updated: 1 February 2022

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1

Imajoh-Ohmi, Shinobu. "O'Farrell's two-dimensional gel electrophoresis." SEIBUTSU BUTSURI KAGAKU 34, no. 6 (1990): 307–15. http://dx.doi.org/10.2198/sbk.34.307.

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2

Lehr, Stefan, and Reiner Westermeier. "2-dimensional gel electrophoresis reloaded." Archives of Physiology and Biochemistry 119, no. 3 (July 2013): 93. http://dx.doi.org/10.3109/13813455.2013.812122.

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3

Viswanathan, Surya, Mustafa Ünlü, and Jonathan S. Minden. "Two-dimensional difference gel electrophoresis." Nature Protocols 1, no. 3 (August 2006): 1351–58. http://dx.doi.org/10.1038/nprot.2006.234.

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4

Serwer, Philip. "Two-dimensional agarose gel electrophoresis without gel manipulation." Analytical Biochemistry 144, no. 1 (January 1985): 172–78. http://dx.doi.org/10.1016/0003-2697(85)90100-9.

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5

Garfin, David E. "Two-dimensional gel electrophoresis: an overview." TrAC Trends in Analytical Chemistry 22, no. 5 (May 2003): 263–72. http://dx.doi.org/10.1016/s0165-9936(03)00506-5.

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6

Gallagher, Sean R., and John A. Smith. "One-Dimensional Gel Electrophoresis of Proteins." Current Protocols in Immunology 00, no. 1 (December 1991): 8.4.1. http://dx.doi.org/10.1002/0471142735.im0804s00.

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7

Danos, Olivier, and Fedor Svinartchouk. "Dialysis-assisted two-dimensional gel electrophoresis." ELECTROPHORESIS 27, no. 17 (September 2006): 3475–79. http://dx.doi.org/10.1002/elps.200500036.

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8

Dunn, Michael J. "Two-dimensional gel electrophoresis of proteins." Journal of Chromatography B: Biomedical Sciences and Applications 418 (July 1987): 145–85. http://dx.doi.org/10.1016/0378-4347(87)80008-7.

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9

Liu, Yi-Ming, and Jonathan V. Sweedler. "Two-Dimensional Separations: Capillary Electrophoresis Coupled to Channel Gel Electrophoresis." Analytical Chemistry 68, no. 22 (January 1996): 3928–33. http://dx.doi.org/10.1021/ac960549+.

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10

Shaw, Margaret M., and Beat M. Riederer. "Sample preparation for two-dimensional gel electrophoresis." PROTEOMICS 3, no. 8 (August 2003): 1408–17. http://dx.doi.org/10.1002/pmic.200300471.

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11

Kaczmarek, Krzysztof, Beata Walczak, Sijmen de Jong, and Bernard G. M. Vandeginste. "Preprocessing of two-dimensional gel electrophoresis images." PROTEOMICS 4, no. 8 (August 2004): 2377–89. http://dx.doi.org/10.1002/pmic.200300758.

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12

Gallagher, Sean R. "One-Dimensional SDS Gel Electrophoresis of Proteins." Current Protocols in Toxicology 00, no. 1 (May 1999): A.3F.1—A.3F.34. http://dx.doi.org/10.1002/0471140856.txa03fs00.

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13

Gallagher, Sean R. "One-Dimensional SDS Gel Electrophoresis of Proteins." Current Protocols in Cell Biology 00, no. 1 (October 1998): 6.1.1–6.1.34. http://dx.doi.org/10.1002/0471143030.cb0601s00.

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14

Curreem, Shirly O. T., Rory M. Watt, Susanna K. P. Lau, and Patrick C. Y. Woo. "Two-dimensional gel electrophoresis in bacterial proteomics." Protein & Cell 3, no. 5 (May 2012): 346–63. http://dx.doi.org/10.1007/s13238-012-2034-5.

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15

Oledzka, Ilona. "Comparative Evaluation of Tissue Protein Separations Applying One- Dimensional Gel Electrophoresis and Capillary Gel Electrophoresis." Open Proteomics Journal 5, no. 1 (April 25, 2012): 17–21. http://dx.doi.org/10.2174/1875039701205010017.

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16

Katsuta, Kazuhiro, Eiko Nomura, and Naoyuki Inagaki. "Multiple Large Gel Two-dimensional Electrophoresis for Proteomics." SEIBUTSU BUTSURI KAGAKU 47, no. 1/2 (2003): 27–31. http://dx.doi.org/10.2198/sbk.47.27.

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17

Oh-Ishi, Masamichi. "New technology in two-dimensional agarose gel electrophoresis." SEIBUTSU BUTSURI KAGAKU 58, no. 2 (2014): 53–55. http://dx.doi.org/10.2198/sbk.58.53.

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18

Hutchinson, D. O., and B. Jongbloed. "Two-dimensional gel electrophoresis in inclusion body myositis." Journal of Clinical Neuroscience 15, no. 4 (April 2008): 440–44. http://dx.doi.org/10.1016/j.jocn.2007.03.006.

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19

Rabilloud, Thierry, and Cécile Lelong. "Two-dimensional gel electrophoresis in proteomics: A tutorial." Journal of Proteomics 74, no. 10 (September 2011): 1829–41. http://dx.doi.org/10.1016/j.jprot.2011.05.040.

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20

Scianimanico, Sandra, Christian Pasquali, Jacques Lavoie, Lukas A. Huber, Jean-Pierre Gorvel, and Michel Desjardins. "Two-dimensional gel electrophoresis analysis of endovacuolar organelles." Electrophoresis 18, no. 14 (1997): 2566–72. http://dx.doi.org/10.1002/elps.1150181412.

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21

Pasquali, Christian, Irene Fialka, and Lukas A. Huber. "Preparative two-dimensional gel electrophoresis of membrane proteins." Electrophoresis 18, no. 14 (1997): 2573–81. http://dx.doi.org/10.1002/elps.1150181413.

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22

Packer, Nicolle H., Margaret A. Lawson, Daniel R. Jardine, J. C. Sanchez, and Andrew A. Gooley. "Analyzing glycoproteins separated by two-dimensional gel electrophoresis." Electrophoresis 19, no. 6 (May 1998): 981–88. http://dx.doi.org/10.1002/elps.1150190613.

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23

Adams, Lonnie D., and Sean R. Gallagher. "Two-Dimensional Gel Electrophoresis Using the O'Farrell System." Current Protocols in Immunology 42, no. 1 (April 2001): 8.5.1–8.5.14. http://dx.doi.org/10.1002/0471142735.im0805scpi.

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24

Challapalli, Kiran Kumar, Claus Zabel, Johannes Schuchhardt, Angela M. Kaindl, Joachim Klose, and Hanspeter Herzel. "High reproducibility of large-gel two-dimensional electrophoresis." ELECTROPHORESIS 25, no. 17 (September 2004): 3040–47. http://dx.doi.org/10.1002/elps.200405979.

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25

Veeser, Stefan, Michael J. Dunn, and Guang-Zhong Yang. "Multiresolution image registration for two-dimensional gel electrophoresis." PROTEOMICS 1, no. 7 (July 2001): 856–70. http://dx.doi.org/10.1002/1615-9861(200107)1:7<856::aid-prot856>3.0.co;2-r.

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26

Wiederkehr, Felix, Allan Ogilvie, and Dieter J. Vonderschmitt. "Two-dimensional gel electrophoresis of cerebrospinal fluid immunoglobulins." Electrophoresis 7, no. 2 (1986): 89–95. http://dx.doi.org/10.1002/elps.1150070207.

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27

Smith, Judith, and David J. Thomas. "Quantitative analysis of one-dimensional gel electrophoresis profiles." Bioinformatics 6, no. 2 (1990): 93–99. http://dx.doi.org/10.1093/bioinformatics/6.2.93.

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28

Tissot, Jean-Daniel, and François Spertini. "Analysis of immunoglobulins by two-dimensional gel electrophoresis." Journal of Chromatography A 698, no. 1-2 (April 1995): 225–50. http://dx.doi.org/10.1016/0021-9673(94)00844-y.

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29

Hori, Shinichiro, Hiroko Sugiura, Teruo Shimizu, Tamio Hirabayashi, Sachiko Ohtani, Mikiharu Yoshida, Kazuto Miyamoto, and Hitoshi Tanabe. "Detection of dystrophin on two-dimensional gel electrophoresis." Biochemical and Biophysical Research Communications 161, no. 2 (June 1989): 726–31. http://dx.doi.org/10.1016/0006-291x(89)92660-0.

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30

Freiburghaus, Andreas U. "Two-dimensional polyacrylamide gel electrophoresis of membrane proteins." Molecular Biotechnology 2, no. 3 (December 1994): 281–93. http://dx.doi.org/10.1007/bf02745881.

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31

Chianese, Lina, Rosalba Mauriello, Luigi Moio, Nunziatina Intorcia, and Francesco Addeo. "Determination of ovine casein heterogeneity using gel electrophoresis and immunochemical techniques." Journal of Dairy Research 59, no. 1 (February 1992): 39–47. http://dx.doi.org/10.1017/s0022029900030223.

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SummaryDiscontinuous PAGE at alkaline and acid pH, polyacrylamide gel isoelectric focusing, two dimensional electrophoresis and immunoblotting have been used to study the heterogeneity of sheep caseins. Three main phenotypes were selected either because of mobility at alkaline and acid pH of the individual αs components or because of their relative intensity. On electrophoresis at alkaline pH, one phenotype showed two distinct bands of lower electrophoretic mobility than β,- and β2-caseins. A detailed study of these components using immunospecific detection with β-casein antiserum showed that these minor components of ovine casein may have a polypeptide chain similar to that of β1- and β2-caseins. Complete electrophoretic patterns of the casein components in some individual milks are also presented.

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32

Marcus, Katrin, Cécile Lelong, and Thierry Rabilloud. "What Room for Two-Dimensional Gel-Based Proteomics in a Shotgun Proteomics World?" Proteomes 8, no. 3 (August 6, 2020): 17. http://dx.doi.org/10.3390/proteomes8030017.

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Two-dimensional gel electrophoresis was instrumental in the birth of proteomics in the late 1980s. However, it is now often considered as an outdated technique for proteomics—a thing of the past. Although this opinion may be true for some biological questions, e.g., when analysis depth is of critical importance, for many others, two-dimensional gel electrophoresis-based proteomics still has a lot to offer. This is because of its robustness, its ability to separate proteoforms, and its easy interface with many powerful biochemistry techniques (including western blotting). This paper reviews where and why two-dimensional gel electrophoresis-based proteomics can still be profitably used. It emerges that, rather than being a thing of the past, two-dimensional gel electrophoresis-based proteomics is still highly valuable for many studies. Thus, its use cannot be dismissed on simple fashion arguments and, as usual, in science, the tree is to be judged by the fruit.

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33

TSAI, MENG-HSIUN, SHU-WEI GUO, YUNG-KUAN CHAN, JIUNN-LIN WU, CHING-LIN WANG, YEN-PING CHU, and WEN-YU CHENG. "AUTOMATIC BAND SEGMENTATION AND DETECTION OF 1D-GEL IMAGES WITH DIFFERENT EXPOSURES." International Journal of Pattern Recognition and Artificial Intelligence 28, no. 01 (February 2014): 1457001. http://dx.doi.org/10.1142/s0218001414570018.

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Many gel electrophoresis image segmentation methods have been proposed. However, most of the proposed methods cannot provide a satisfying performance since a gel electrophoresis image is a manually captured image often with various noise and poor quality. This paper presents a one-dimensional-gel image segmentation method (1DGISM) to cut the bands off from a one-dimensional gel electrophoresis image (1D-gel image). The experimental results showed that 1DGISM can give an impressive segmentation performance even if the band boundaries are very indistinct. Moreover, the authors suggest that a low exposure for imaging be helpful in segmenting bright bands. Alternatively, taking the image at a high exposure is useful if the bands are dark.

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34

Oh-ishi, Masamichi, and Tamio Hirabayashi. "Micro-two-dimensional gel electrophoresis with agarose gel in the first dimension." SEIBUTSU BUTSURI KAGAKU 32, no. 3 (1988): 113–20. http://dx.doi.org/10.2198/sbk.32.113.

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35

König, Simone. "Differential vs. comparative gel electrophoresis: New technology drives standardisation and quantification in protein two-dimensional gel electrophoresis." TrAC Trends in Analytical Chemistry 122 (January 2020): 115731. http://dx.doi.org/10.1016/j.trac.2019.115731.

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36

MARULLO, OSVALDO, ALESSIO SOGGIU, and ENRICO CAPOBIANCO. "TWO-DIMENSIONAL ELECTROPHORESIS GEL IMAGES SCAN FOR DECOMPOSITION AND DEPLETION ANALYSIS." Advances in Adaptive Data Analysis 02, no. 03 (July 2010): 359–71. http://dx.doi.org/10.1142/s1793536910000525.

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Two-dimensional Electrophoresis Gel Images Scan (2dEGIS) implements a mix of computational methods for processing two-dimensional electrophoresis gel images. For advancing the analysis in case-control sample studies, a multi-component decomposition-approximation approach is presented, based on: (1) A global scan aimed to detect discriminative patterns with just a few components; (2) A more localized image scan through aggregated components; (3) The exploration of specific regions with maximal localization power. The tool 2dEGIS represents a novel unifying instrument for the computational analysis of gel images.

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37

Endler, A. Thomas, Donald S. Young, and Russell P. Tracy. "Technology: Methodology for High-Resolution Two-Dimensional Gel Electrophoresis." Cancer Investigation 5, no. 2 (January 1987): 127–49. http://dx.doi.org/10.3109/07357908709018467.

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38

Murphy, Sandra, Paul Dowling, and Kay Ohlendieck. "Comparative Skeletal Muscle Proteomics Using Two-Dimensional Gel Electrophoresis." Proteomes 4, no. 3 (September 9, 2016): 27. http://dx.doi.org/10.3390/proteomes4030027.

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39

Kirinoki, Masashi, Daisaku Takai, Rumiko Kaku, Yao Yao, and Tamio Hirabayashi. "Two-dimensional gel electrophoresis of skeletal muscle nuclear proteins." SEIBUTSU BUTSURI KAGAKU 38, no. 2 (1994): 103–7. http://dx.doi.org/10.2198/sbk.38.103.

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40

Kondo, Tadashi. "Clinical marker development by two-dimensional polyacrylamide gel electrophoresis." SEIBUTSU BUTSURI KAGAKU 48, no. 3 (2004): 89–91. http://dx.doi.org/10.2198/sbk.48.89.

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41

Kondo, Tadashi. "Cancer biomarker study using two-dimensional difference gel electrophoresis." SEIBUTSU BUTSURI KAGAKU 58, no. 2 (2014): 46–48. http://dx.doi.org/10.2198/sbk.58.46.

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42

HuaMei Xin, and Fengping Zhao. "Improved Denoising Method of Two Dimensional Gel Electrophoresis Images." International Journal of Digital Content Technology and its Applications 6, no. 11 (June 30, 2012): 352–60. http://dx.doi.org/10.4156/jdcta.vol6.issue11.44.

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43

Chung, Dongil, Juhyun Jung, Jaeduck Jang, Jongchul Ye, Jaeseung Jeong, and Kwang H. Lee. "An Integrative Analysis Program for Two-dimensional Gel Electrophoresis." Interdisciplinary Bio Central 1, no. 3 (August 31, 2006): 146–51. http://dx.doi.org/10.4051/ibce.2009.3.0017.

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44

Deyl, Zdeněk. "Two dimensional gel electrophoresis of proteins: methods and applications." Journal of Chromatography B: Biomedical Sciences and Applications 377 (January 1986): 477. http://dx.doi.org/10.1016/s0378-4347(00)80814-2.

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45

Hutchinson, David O., Bronwen Jongbloed, and Garth Cooper. "455: Two-dimensional gel electrophoresis in inclusion body myositis." Journal of Clinical Neuroscience 15, no. 3 (March 2008): 361–62. http://dx.doi.org/10.1016/j.jocn.2007.07.065.

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46

Dykstra, Kevin H., and Henry Y. Wang. "Monitoring intracellular protein profiles with two-dimensional gel electrophoresis." Biotechnology Progress 8, no. 4 (July 1992): 369–74. http://dx.doi.org/10.1021/bp00016a015.

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47

des Francs, Catherine Colas, Hervé Thiellement, and Dominique de Vienne. "Analysis of Leaf Proteins by Two-Dimensional Gel Electrophoresis." Plant Physiology 78, no. 1 (May 1, 1985): 178–82. http://dx.doi.org/10.1104/pp.78.1.178.

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48

Damodaran, Senthilkumar, and Richard A. Rabin. "Minimizing Variability in Two-dimensional Electrophoresis Gel Image Analysis." OMICS: A Journal of Integrative Biology 11, no. 2 (June 2007): 225–30. http://dx.doi.org/10.1089/omi.2007.0018.

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49

Paton, Louise N., Juliet A. Gerrard, and Warren G. Bryson. "Two-dimensional gel electrophoresis of wool intermediate filament proteins." Journal of Proteomics 71, no. 4 (October 2008): 439–47. http://dx.doi.org/10.1016/j.jprot.2008.06.008.

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50

Griebel, Anja, Sabine Rund, Friedhelm Schönfeld, Wolfgang Dörner, Renate Konrad, and Steffen Hardt. "Integrated polymer chip for two-dimensional capillary gel electrophoresis." Lab Chip 4, no. 1 (2004): 18–23. http://dx.doi.org/10.1039/b311032j.

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