Journal articles on the topic 'Developmental biology/pattern formation'

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1

GREEN, P. B. "Developmental Biology: Pattern Formation." Science 229, no. 4709 (July 12, 1985): 156. http://dx.doi.org/10.1126/science.229.4709.156.

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2

Pas, Kristofor, Samantha Laboy-Segarra, and Juhyun Lee. "Systems of pattern formation within developmental biology." Progress in Biophysics and Molecular Biology 167 (December 2021): 18–25. http://dx.doi.org/10.1016/j.pbiomolbio.2021.09.005.

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3

Pas, Kristofor, Samantha Laboy-Segarra, and Juhyun Lee. "Systems of pattern formation within developmental biology." Progress in Biophysics and Molecular Biology 167 (December 2021): 18–25. http://dx.doi.org/10.1016/j.pbiomolbio.2021.09.005.

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4

Swanson, GavinJ. "Pattern formation. A primer in developmental biology." FEBS Letters 186, no. 1 (July 1, 1985): 124. http://dx.doi.org/10.1016/0014-5793(85)81359-4.

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5

Kicheva, A., M. Cohen, and J. Briscoe. "Developmental Pattern Formation: Insights from Physics and Biology." Science 338, no. 6104 (October 11, 2012): 210–12. http://dx.doi.org/10.1126/science.1225182.

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6

Akam, Michael, and John Gerhart. "Pattern formation and developmental mechanisms." Current Opinion in Genetics & Development 2, no. 4 (January 1992): 541–42. http://dx.doi.org/10.1016/s0959-437x(05)80168-6.

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7

Stemple, Derek L., and Jean-Paul Vincent. "Pattern formation and developmental mechanisms." Current Opinion in Genetics & Development 14, no. 4 (August 2004): 325–27. http://dx.doi.org/10.1016/j.gde.2004.06.016.

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8

McGinnis, William, and Cheryll Tickle. "Pattern formation and developmental mechanisms." Current Opinion in Genetics & Development 15, no. 4 (August 2005): 355–57. http://dx.doi.org/10.1016/j.gde.2005.06.005.

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9

Firtel, Rick, and Magdalena Zernicka-Goetz. "Pattern formation and developmental mechanisms." Current Opinion in Genetics & Development 16, no. 4 (August 2006): 331–32. http://dx.doi.org/10.1016/j.gde.2006.06.014.

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10

Hartmann, Christine, and Ross Cagan. "Pattern formation and developmental mechanisms." Current Opinion in Genetics & Development 17, no. 4 (August 2007): 261–63. http://dx.doi.org/10.1016/j.gde.2007.07.002.

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11

Leyser, Ottoline, and Olivier Pourquié. "Pattern formation and developmental mechanisms." Current Opinion in Genetics & Development 18, no. 4 (August 2008): 285–86. http://dx.doi.org/10.1016/j.gde.2008.08.001.

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12

Gruss, Peter, and William McGinnis. "Pattern formation and developmental mechanisms." Current Opinion in Genetics & Development 3, no. 4 (January 1993): 553–55. http://dx.doi.org/10.1016/0959-437x(93)90089-8.

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13

Meyer, Barbara J., and Janet Rossant. "Pattern formation and developmental mechanisms." Current Opinion in Genetics & Development 4, no. 4 (August 1994): 499–501. http://dx.doi.org/10.1016/0959-437x(94)90062-8.

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14

Reeves, Gregory T., Cyrill B. Muratov, Trudi Schüpbach, and Stanislav Y. Shvartsman. "Quantitative Models of Developmental Pattern Formation." Developmental Cell 11, no. 3 (September 2006): 289–300. http://dx.doi.org/10.1016/j.devcel.2006.08.006.

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15

Nijhout, H. Frederik. "Symmetry systems and compartments in Lepidopteran wings: the evolution of a patterning mechanism." Development 1994, Supplement (January 1, 1994): 225–33. http://dx.doi.org/10.1242/dev.1994.supplement.225.

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The wing patterns of butterflies are made up of an array of discrete pattern elements. Wing patterns evolve through changes in the size, shape and color of these pattern elements. The pattern elements are arranged in several parallel symmetry systems that develop independently from one another. The wing is further compartmentalized for color pattern formation by the wing veins. Pattern development in these compartments is largely independent from that in adjacent compartments. This two-fold compartmentalization of the color pattern (by symmetry systems and wing veins) has resulted in an extremely flexible developmental system that allows each pattern element to vary and evolve independently, without the burden of correlated evolution in other elements. The lack of developmental constraints on pattern evolution may explain why butterflies have diverged so dramatically in their color patterns, and why accurate mimicry has evolved so frequently. This flexible developmental system appears to have evolved from the convergence of two ancient patterning systems that the butterflies inherited from their ancestors. Mapping of various pattern types onto a phylogeny of the Lepidoptera indicates that symmetry systems evolved in several steps from simple spotting patterns. Initially all such patterns were developmentally identical but each became individuated in the immediate ancestors of the butterflies. Compartmentalization by wing veins is found in all Lepidoptera and their sister group the Trichoptera, but affects primarily the ripple patterns that form the background upon which spotting patterns and symmetry systems develop. These background pattern are determined earlier in ontogeny than are the symmetry systems, and the compartmentalization mechanism is presumably no longer active when the latter develop. It appears that both individuation of symmetry systems and compartmentalization by the wing veins began at or near the wing margin. Only the butterflies and their immediate ancestors evolved a pattern formation mechanism that combines the development of a regular array of well-differentiated symmetry systems with the mechanism that compartmentalizes the wing with respect to color pattern formation. The result was an uncoupling of symmetry system development in each wing cell. This, together with the individuation of symmetry systems, yielded an essentially mosaic developmental system of unprecedented permutational flexibility that enabled the great radiation of butterfly wing patterns.
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16

Chuong, Cheng-Ming, and Michael K. Richardson. "Pattern formation today." International Journal of Developmental Biology 53, no. 5-6 (2009): 653–58. http://dx.doi.org/10.1387/ijdb.082594cc.

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17

Ando, Hiroshi, Yasuji Sawada, Hiroshi Shimizu, and Tsutomu Sugiyama. "Pattern formation in hydra tissue without developmental gradients." Developmental Biology 133, no. 2 (June 1989): 405–14. http://dx.doi.org/10.1016/0012-1606(89)90044-4.

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18

Zhang, Xiaoxiao, Patrick T. Mather, Mark J. Bowick, and Teng Zhang. "Non-uniform curvature and anisotropic deformation control wrinkling patterns on tori." Soft Matter 15, no. 26 (2019): 5204–10. http://dx.doi.org/10.1039/c9sm00235a.

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We investigate wrinkling patterns in a tri-layer torus consisting of an expanding thin outer layer, an intermediate soft layer and an inner core with a tunable shear modulus, inspired by pattern formation in developmental biology, such as follicle pattern formation during the development of chicken embryos.
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19

Schweisguth, François, and Francis Corson. "Self-Organization in Pattern Formation." Developmental Cell 49, no. 5 (June 2019): 659–77. http://dx.doi.org/10.1016/j.devcel.2019.05.019.

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20

Umulis, David M., and Hans G. Othmer. "The Role of Mathematical Models in Understanding Pattern Formation in Developmental Biology." Bulletin of Mathematical Biology 77, no. 5 (October 4, 2014): 817–45. http://dx.doi.org/10.1007/s11538-014-0019-7.

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21

Richardson, M. K., A. Hornbruch, and L. Wolpert. "Mechanisms of pigment pattern formation in the quail embryo." Development 109, no. 1 (May 1, 1990): 81–89. http://dx.doi.org/10.1242/dev.109.1.81.

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One hypothesis to account for pigment patterning in birds is that neural crest cells migrate into all feather papillae. Local cues then act upon the differentiation of crest cells into melanocytes. This hypothesis is derived from a study of the quail-chick chimaera (Richardson et al., Development 107, 805–818, 1989). Another idea, derived from work on larval fish and amphibia, is that pigment patterns arise from the differential migration of crest cells. We want to know which of these mechanisms can best account for pigment pattern formation in the embryonic plumage of the quail wing. Most of the feather papillae on the dorsal surface of the wing are pigmented, while many on the ventral surface are white. When ectoderm from unpigmented feather papillae is grown in culture, it gives rise to melanocytes. This indicates that neural crest cells are present in white feathers but that they fail to differentiate. If the wing tip is inverted experimentally then the pigment pattern is inverted also. This is difficult to explain in terms of a model based on migratory pathways, unless one assumes that the pathways became re-routed. When an extra polarizing region is grafted to the anterior margin of the wing bud, a duplication develops in: (1) the pattern of skeletal elements; (2) the pattern of feather papillae; (3) the feather pigment pattern. The pigment pattern was not a precise mirror image although some groups of papillae showed a high degree of symmetry in their pigmentation. Both the tip inversions and the duplications produce discontinuities in the feather and pigment patterns. No evidence of intercalation was found in these cases. We conclude that pigment patterning in birds is determined by local cues acting on melanocyte differentiation, rather than by the differential migration of crest cells. Positional values along the anteroposterior axis of the pigment pattern are determined by a gradient of positional information. Thus the pigment patterns, feather patterns and cartilage patterns of the wing may all be specified by a similar mechanism.
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22

Wedden, S. E., J. R. Ralphs, and C. Tickle. "Pattern formation in the facial primordia." Development 103, Supplement (September 1, 1988): 31–40. http://dx.doi.org/10.1242/dev.103.supplement.31.

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Pattern formation is the developmental process that leads to the spatial ordering of cell differentiation. We have explored the problem of pattern formation in the development of the face of chick embryos. At early stages, the developing face consists of a series of small buds of tissue, the facial primordia that encircle the primitive mouth. The concepts of positional information provide a framework for considering how the patterns of differentiated cells are generated in the face. We suggest that the cranial neural crest cells must first be informed to which facial primordium they belong and then of their position within that primordium. The cells of the early primordia appear indistinguishable. However, when the mesenchyme cells are placed in high-density culture, cartilage differentiates. The extent and pattern of cartilage differentiation is characteristic for the cell population of each facial primordium. Myogenic cells also differentiate in the cultures, but the proportion of myogenic cells is independent of the extent of chondrogenesis. Within the facial primordia, a set of epithelial–mesenchymal interactions appears to be required for outgrowth and pattern formation along the proximodistal axis of the chick beaks. In culture, face epithelium locally inhibits cartilage differentiation and suggests that another set of epithelial–mesenchymal interactions may be involved in cell patterning. The mechanisms involved in specifying the mediolateral axis of the face, for example, the midpoint of the upper beak, are not known. Vitamin A derivatives, collectively known as retinoids, affect the development of the face of chick embryos and lead to a specific facial defect. Upper beak development is inhibited but the lower beak develops normally. The response to retinoids could be related to the specification of cells to belong to the facial primordium that will form the upper beak. Alternatively, retinoids may interfere with positional cues that operate to inform cells of their position within that primordium.
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23

Storey, K. G. "Cell lineage and pattern formation in the earthworm." Development 107, no. 3 (November 1, 1989): 519–31. http://dx.doi.org/10.1242/dev.107.3.519.

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The pattern of segmental contribution of teloblasts in earthworm embryo was examined by injection of the and by studying the timing and symmetry of the first each teloblast bandlet. The changing spatial ectoteloblasts during development was also used to contributions. A mathematical method for determining time of each teloblast is presented. The teloblasts progeny, the blast cells, were found to undergo unique stereotyped patterns of division which lead to equally patterns of contribution in the segments apparent in
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24

Nardi, James B. "Forming Biological Patterns Pattern Formation: A Primer in Developmental Biology G. M. Malacinski S. V. Bryant." BioScience 35, no. 8 (September 1985): 512. http://dx.doi.org/10.2307/1309823.

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25

Caicedo-Carvajal, Carlos E., and Troy Shinbrot. "In silico zebrafish pattern formation." Developmental Biology 315, no. 2 (March 2008): 397–403. http://dx.doi.org/10.1016/j.ydbio.2007.12.036.

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26

Weeks, Gerald, and Julian D. Gross. "Potential morphogens involved in pattern formation during Dictyostelium differentiation." Biochemistry and Cell Biology 69, no. 9 (September 1, 1991): 608–17. http://dx.doi.org/10.1139/o91-090.

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Upon starvation, Dictyostelium amoebae aggregate together and then differentiate into either the stalk or spore cells that, respectively, form the stalk and sorus of the fruiting body. During differentiation, the prestalk and prespore cells become spatially segregated in a clearly defined developmental pattern. Several low molecular weight molecules that influence cell type determination during in vitro differentiation have been identified. The possible role of these molecules as morphogens, responsible for the formation of the developmental pattern, is discussed.Key words: development, pattern formation, morphogen, Dictyostelium differentiation.
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27

Czirok, Andras, and Charles D. Little. "Pattern formation during vasculogenesis." Birth Defects Research Part C: Embryo Today: Reviews 96, no. 2 (June 2012): 153–62. http://dx.doi.org/10.1002/bdrc.21010.

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28

Umulis, D. M., and H. G. Othmer. "Mechanisms of scaling in pattern formation." Development 140, no. 24 (December 3, 2013): 4830–43. http://dx.doi.org/10.1242/dev.100511.

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29

Katz, Wendy S., and Paul W. Sternberg. "Intercellular signalling inCaenorhabditis elegansvulval pattern formation." Seminars in Cell & Developmental Biology 7, no. 2 (April 1996): 175–83. http://dx.doi.org/10.1006/scdb.1996.0024.

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30

Neumann, Carl J. "Pattern formation in the zebrafish retina." Seminars in Cell & Developmental Biology 12, no. 6 (December 2001): 485–90. http://dx.doi.org/10.1006/scdb.2001.0272.

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31

Othmer, H. G., K. Painter, D. Umulis, and C. Xue. "The Intersection of Theory and Application in Elucidating Pattern Formation in Developmental Biology." Mathematical Modelling of Natural Phenomena 4, no. 4 (2009): 3–82. http://dx.doi.org/10.1051/mmnp/20094401.

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32

Wittkopp, Patricia J., John R. True, and Sean B. Carroll. "Reciprocal functions of the Drosophila Yellow and Ebony proteins in the development and evolution of pigment patterns." Development 129, no. 8 (April 15, 2002): 1849–58. http://dx.doi.org/10.1242/dev.129.8.1849.

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Body coloration affects how animals interact with the environment. In insects, the rapid evolution of black and brown melanin patterns suggests that these are adaptive traits. The developmental and molecular mechanisms that generate these pigment patterns are largely unknown. We demonstrate that the regulation and function of the yellow and ebony genes in Drosophila melanogaster play crucial roles in this process. The Yellow protein is required to produce black melanin, and is expressed in a pattern that correlates with the distribution of this pigment. Conversely, Ebony is required to suppress some melanin formation, and is expressed in cells that will produce both melanized and non-melanized cuticle. Ectopic expression of Ebony inhibits melanin formation, but increasing Yellow expression can overcome this effect. In addition, ectopic expression of Yellow is sufficient to induce melanin formation, but only in the absence of Ebony. These results suggest that the patterns and levels of Yellow and Ebony expression together determine the pattern and intensity of melanization. Based on their functions in Drosophila melanogaster, we propose that changes in the expression of Yellow and/or Ebony may have evolved with melanin patterns. Consistent with our hypothesis, we find that Yellow and Ebony are expressed in complementary spatial patterns that correlate with the formation of an evolutionary novel, male-specific pigment pattern in Drosophila biarmipes wings. These findings provide a developmental and genetic framework for understanding the evolution of melanin patterns.
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33

DiNardo, S. "Drosophila pattern formation: a meeting review." Genes & Development 2, no. 6 (June 1, 1988): 617–19. http://dx.doi.org/10.1101/gad.2.6.617.

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34

Chuong, Cheng-Ming, and Michael K. Richardson. "Preface to Pattern Formation Special Issue." International Journal of Developmental Biology 53, no. 5-6 (2009): 651. http://dx.doi.org/10.1387/ijdb.092946cc.

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35

Carthew, Richard W. "Pattern formation in the Drosophila eye." Current Opinion in Genetics & Development 17, no. 4 (August 2007): 309–13. http://dx.doi.org/10.1016/j.gde.2007.05.001.

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36

Ephrussi, A. "Pattern formation and developmental mechanisms From cell patterning to organogenesis." Current Opinion in Genetics & Development 13, no. 4 (August 2003): 323–25. http://dx.doi.org/10.1016/s0959-437x(03)00092-3.

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37

Timmermans, Marja, Daniel Chitwood, Fabio Nogueira, and Shahinez Madi. "Pattern formation by small RNA signals." Developmental Biology 319, no. 2 (July 2008): 463–64. http://dx.doi.org/10.1016/j.ydbio.2008.05.008.

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38

Abdelilah, Salim, and Wolfgang Driever. "Pattern Formation injanus-Mutant Zebrafish Embryos." Developmental Biology 184, no. 1 (April 1997): 70–84. http://dx.doi.org/10.1006/dbio.1997.8517.

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39

Candela, Héctor, Antonio Martı́nez-Laborda, and José Luis Micol. "Venation Pattern Formation inArabidopsis thalianaVegetative Leaves." Developmental Biology 205, no. 1 (January 1999): 205–16. http://dx.doi.org/10.1006/dbio.1998.9111.

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40

Lammers, Nicholas C., Vahe Galstyan, Armando Reimer, Sean A. Medin, Chris H. Wiggins, and Hernan G. Garcia. "Multimodal transcriptional control of pattern formation in embryonic development." Proceedings of the National Academy of Sciences 117, no. 2 (December 27, 2019): 836–47. http://dx.doi.org/10.1073/pnas.1912500117.

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Predicting how interactions between transcription factors and regulatory DNA sequence dictate rates of transcription and, ultimately, drive developmental outcomes remains an open challenge in physical biology. Using stripe 2 of the even-skipped gene in Drosophila embryos as a case study, we dissect the regulatory forces underpinning a key step along the developmental decision-making cascade: the generation of cytoplasmic mRNA patterns via the control of transcription in individual cells. Using live imaging and computational approaches, we found that the transcriptional burst frequency is modulated across the stripe to control the mRNA production rate. However, we discovered that bursting alone cannot quantitatively recapitulate the formation of the stripe and that control of the window of time over which each nucleus transcribes even-skipped plays a critical role in stripe formation. Theoretical modeling revealed that these regulatory strategies (bursting and the time window) respond in different ways to input transcription factor concentrations, suggesting that the stripe is shaped by the interplay of 2 distinct underlying molecular processes.
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41

MacWilliams, H. K. "Introduction to the pattern formation section." Developmental Genetics 11, no. 5-6 (1990): 425–26. http://dx.doi.org/10.1002/dvg.1020110516.

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42

Meyerowitz, E. M., D. R. Smyth, and J. L. Bowman. "Abnormal flowers and pattern formation in floral." Development 106, no. 2 (June 1, 1989): 209–17. http://dx.doi.org/10.1242/dev.106.2.209.

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43

Mayer, Ulrike, and Gerd Jürgens. "Pattern formation in plant embryogenesis: A reassessment." Seminars in Cell & Developmental Biology 9, no. 2 (April 1998): 187–93. http://dx.doi.org/10.1006/scdb.1997.0210.

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44

Newman, S. A., and W. D. Comper. "‘Generic’ physical mechanisms of morphogenesis and pattern formation." Development 110, no. 1 (September 1, 1990): 1–18. http://dx.doi.org/10.1242/dev.110.1.1.

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The role of ‘generic’ physical mechanisms in morphogenesis and pattern formation of tissues is considered. Generic mechanisms are defined as those physical processes that are broadly applicable to living and non-living systems, such as adhesion, surface tension and gravitational effects, viscosity, phase separation, convection and reaction-diffusion coupling. They are contrasted with ‘genetic’ mechanisms, a term reserved for highly evolved, machine-like, biomolecular processes. Generic mechanisms acting upon living tissues are capable of giving rise to morphogenetic rearrangements of cytoplasmic, tissue and extracellular matrix components, sometimes leading to ‘microfingers’, and to chemical waves or stripes. We suggest that many morphogenetic and patterning effects are the inevitable outcome of recognized physical properties of tissues, and that generic physical mechanisms that act on these properties are complementary to, and interdependent with genetic mechanisms. We also suggest that major morphological reorganizations in phylogenetic lineages may arise by the action of generic physical mechanisms on developing embryos. Subsequent evolution of genetic mechanisms could stabilize and refine developmental outcomes originally guided by generic effects.
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45

Garvie, Marcus R., and Catalin Trenchea. "A three level finite element approximation of a pattern formation model in developmental biology." Numerische Mathematik 127, no. 3 (November 1, 2013): 397–422. http://dx.doi.org/10.1007/s00211-013-0591-z.

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46

Banerjee, Tirtha Das, and Antónia Monteiro. "Molecular mechanisms underlying simplification of venation patterns in holometabolous insects." Development 147, no. 23 (November 3, 2020): dev196394. http://dx.doi.org/10.1242/dev.196394.

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ABSTRACTHow mechanisms of pattern formation evolve has remained a central research theme in the field of evolutionary and developmental biology. The mechanism of wing vein differentiation in Drosophila is a classic text-book example of pattern formation using a system of positional information, yet very little is known about how species with a different number of veins pattern their wings, and how insect venation patterns evolved. Here, we examine the expression pattern of genes previously implicated in vein differentiation in Drosophila in two butterfly species with more complex venation Bicyclus anynana and Pieris canidia. We also test the function of some of these genes in B. anynana. We identify both conserved as well as new domains of decapentaplegic, engrailed, invected, spalt, optix, wingless, armadillo, blistered and rhomboid gene expression in butterflies, and propose how the simplified venation in Drosophila might have evolved via loss of decapentaplegic, spalt and optix gene expression domains, via silencing of vein-inducing programs at Spalt-expression boundaries, and via changes in expression of vein maintenance genes.
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47

Roignant, Jean-Yves, and Jessica E. Treisman. "Pattern formation in the Drosophila eye disc." International Journal of Developmental Biology 53, no. 5-6 (2009): 795–804. http://dx.doi.org/10.1387/ijdb.072483jr.

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48

Fraser, Scott E. "Pattern formation in the vertebrate nervous system." Current Opinion in Genetics & Development 1, no. 2 (August 1991): 217–20. http://dx.doi.org/10.1016/s0959-437x(05)80073-5.

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49

Jürgens, Gerd. "Pattern formation in the flowering plant embryo." Current Opinion in Genetics & Development 2, no. 4 (January 1992): 567–70. http://dx.doi.org/10.1016/s0959-437x(05)80173-x.

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50

French, Vernon. "Pattern formation in colour on butterfly wings." Current Opinion in Genetics & Development 7, no. 4 (August 1997): 524–29. http://dx.doi.org/10.1016/s0959-437x(97)80081-0.

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