Journal articles on the topic 'Data Analysis Workflow'
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Pfaff, Claas-Thido, Karin Nadrowski, Sophia Ratcliffe, Christian Wirth, and Helge Bruelheide. "Readable workflows need simple data." F1000Research 3 (May 14, 2014): 110. http://dx.doi.org/10.12688/f1000research.3940.1.
Full textSong, Tianhong, Sven Köhler, Bertram Ludäscher, James Hanken, Maureen Kelly, David Lowery, James A. Macklin, Paul J. Morris, and Robert A. Morris. "Towards Automated Design, Analysis and Optimization of Declarative Curation Workflows." International Journal of Digital Curation 9, no. 2 (October 29, 2014): 111–22. http://dx.doi.org/10.2218/ijdc.v9i2.337.
Full textHribar, Michelle R., Sarah Read-Brown, Isaac H. Goldstein, Leah G. Reznick, Lorinna Lombardi, Mansi Parikh, Winston Chamberlain, and Michael F. Chiang. "Secondary use of electronic health record data for clinical workflow analysis." Journal of the American Medical Informatics Association 25, no. 1 (September 26, 2017): 40–46. http://dx.doi.org/10.1093/jamia/ocx098.
Full textSuetake, Hirotaka, Tomoya Tanjo, Manabu Ishii, Bruno P. Kinoshita, Takeshi Fujino, Tsuyoshi Hachiya, Yuichi Kodama, et al. "Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics." F1000Research 11 (August 4, 2022): 889. http://dx.doi.org/10.12688/f1000research.122924.1.
Full textThang, Mike W. C., Xin-Yi Chua, Gareth Price, Dominique Gorse, and Matt A. Field. "MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data." F1000Research 8 (May 23, 2019): 726. http://dx.doi.org/10.12688/f1000research.18866.1.
Full textŠimko, Tibor, Lukas Heinrich, Harri Hirvonsalo, Dinos Kousidis, and Diego Rodríguez. "REANA: A System for Reusable Research Data Analyses." EPJ Web of Conferences 214 (2019): 06034. http://dx.doi.org/10.1051/epjconf/201921406034.
Full textSouza, Renan, Vitor Silva, Alexandre A. B. Lima, Daniel de Oliveira, Patrick Valduriez, and Marta Mattoso. "Distributed in-memory data management for workflow executions." PeerJ Computer Science 7 (May 7, 2021): e527. http://dx.doi.org/10.7717/peerj-cs.527.
Full textThang, Mike W. C., Xin-Yi Chua, Gareth Price, Dominique Gorse, and Matt A. Field. "MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data." F1000Research 8 (October 18, 2019): 726. http://dx.doi.org/10.12688/f1000research.18866.2.
Full textCurcin, Vasa, Moustafa Ghanem, and Yike Guo. "The design and implementation of a workflow analysis tool." Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 368, no. 1926 (September 13, 2010): 4193–208. http://dx.doi.org/10.1098/rsta.2010.0157.
Full textJackson, Michael, Kostas Kavoussanakis, and Edward W. J. Wallace. "Using prototyping to choose a bioinformatics workflow management system." PLOS Computational Biology 17, no. 2 (February 25, 2021): e1008622. http://dx.doi.org/10.1371/journal.pcbi.1008622.
Full textWeigel, Tobias, Ulrich Schwardmann, Jens Klump, Sofiane Bendoukha, and Robert Quick. "Making Data and Workflows Findable for Machines." Data Intelligence 2, no. 1-2 (January 2020): 40–46. http://dx.doi.org/10.1162/dint_a_00026.
Full textRomano, P., G. Bertolini, F. De Paoli, M. Fattore, D. Marra, G. Mauri, E. Merelli, I. Porro, S. Scaglione, and L. Milanesi. "Network integration of data and analysis of oncology interest." Journal of Integrative Bioinformatics 3, no. 1 (June 1, 2006): 45–55. http://dx.doi.org/10.1515/jib-2006-21.
Full textStoudt, Sara, Váleri N. Vásquez, and Ciera C. Martinez. "Principles for data analysis workflows." PLOS Computational Biology 17, no. 3 (March 18, 2021): e1008770. http://dx.doi.org/10.1371/journal.pcbi.1008770.
Full textDallmeier-Tiessen, Sünje, Varsha Khodiyar, Fiona Murphy, Amy Nurnberger, Lisa Raymond, and Angus Whyte. "Connecting Data Publication to the Research Workflow: A Preliminary Analysis." International Journal of Digital Curation 12, no. 1 (September 16, 2017): 88–105. http://dx.doi.org/10.2218/ijdc.v12i1.533.
Full textEmami Khoonsari, Payam, Pablo Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, et al. "Interoperable and scalable data analysis with microservices: applications in metabolomics." Bioinformatics 35, no. 19 (March 9, 2019): 3752–60. http://dx.doi.org/10.1093/bioinformatics/btz160.
Full textKhan, Fakhri Alam, Sardar Hussain, Ivan Janciak, and Peter Brezany. "Towards Next Generation Provenance Systems for e-Science." International Journal of Information System Modeling and Design 2, no. 3 (July 2011): 24–48. http://dx.doi.org/10.4018/jismd.2011070102.
Full textGraham, Andrew, Stephan Gmur, and Travis Scott. "Improved SCAT data workflow to increase efficiency and data accuracy." International Oil Spill Conference Proceedings 2017, no. 1 (May 1, 2017): 2674–93. http://dx.doi.org/10.7901/2169-3358-2017.1.2674.
Full textTang, Jing, Jianbo Fu, Yunxia Wang, Bo Li, Yinghong Li, Qingxia Yang, Xuejiao Cui, et al. "ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies." Briefings in Bioinformatics 21, no. 2 (January 15, 2019): 621–36. http://dx.doi.org/10.1093/bib/bby127.
Full textLakaraju, Sandeep, Dianxiang Xu, and Yong Wang. "Analysis of Healthcare Workflows in Accordance with Access Control Policies." International Journal of Healthcare Information Systems and Informatics 11, no. 1 (January 2016): 1–20. http://dx.doi.org/10.4018/ijhisi.2016010101.
Full textAhn, Shinyoung, ByoungSeob Kim, Hyun-Hwa Choi, Seunghyub Jeon, Seungjo Bae, and Wan Choi. "Workflow-based Bio Data Analysis System for HPC." KIPS Transactions on Software and Data Engineering 2, no. 2 (February 28, 2013): 97–106. http://dx.doi.org/10.3745/ktsde.2013.2.2.097.
Full textMissier, Paolo, Simon Woodman, Hugo Hiden, and Paul Watson. "Provenance and data differencing for workflow reproducibility analysis." Concurrency and Computation: Practice and Experience 28, no. 4 (April 30, 2013): 995–1015. http://dx.doi.org/10.1002/cpe.3035.
Full textClarkson, C. R. "Production data analysis of unconventional gas wells: Workflow." International Journal of Coal Geology 109-110 (April 2013): 147–57. http://dx.doi.org/10.1016/j.coal.2012.11.016.
Full textSaleem, Hamza, and Muhammad Naveed. "SoK: Anatomy of Data Breaches." Proceedings on Privacy Enhancing Technologies 2020, no. 4 (October 1, 2020): 153–74. http://dx.doi.org/10.2478/popets-2020-0067.
Full textBhardwaj, Vivek, Steffen Heyne, Katarzyna Sikora, Leily Rabbani, Michael Rauer, Fabian Kilpert, Andreas S. Richter, Devon P. Ryan, and Thomas Manke. "snakePipes: facilitating flexible, scalable and integrative epigenomic analysis." Bioinformatics 35, no. 22 (May 27, 2019): 4757–59. http://dx.doi.org/10.1093/bioinformatics/btz436.
Full textSilva Junior, Daniel, Esther Pacitti, Aline Paes, and Daniel de Oliveira. "Provenance-and machine learning-based recommendation of parameter values in scientific workflows." PeerJ Computer Science 7 (July 5, 2021): e606. http://dx.doi.org/10.7717/peerj-cs.606.
Full textOh, Sehyun, Ludwig Geistlinger, Marcel Ramos, Martin Morgan, Levi Waldron, and Markus Riester. "Reliable Analysis of Clinical Tumor-Only Whole-Exome Sequencing Data." JCO Clinical Cancer Informatics, no. 4 (September 2020): 321–35. http://dx.doi.org/10.1200/cci.19.00130.
Full textRodríguez, Diego, Rokas Mačiulaitis, Jan Okraska, and Tibor Šimko. "Hybrid analysis pipelines in the REANA reproducible analysis platform." EPJ Web of Conferences 245 (2020): 06041. http://dx.doi.org/10.1051/epjconf/202024506041.
Full textHa, Thang N., Kurt J. Marfurt, Bradley C. Wallet, and Bryce Hutchinson. "Pitfalls and implementation of data conditioning, attribute analysis, and self-organizing maps to 2D data: Application to the Exmouth Plateau, North Carnarvon Basin, Australia." Interpretation 7, no. 3 (August 1, 2019): SG23—SG42. http://dx.doi.org/10.1190/int-2018-0248.1.
Full textSinaci, A. Anil, Francisco J. Núñez-Benjumea, Mert Gencturk, Malte-Levin Jauer, Thomas Deserno, Catherine Chronaki, Giorgio Cangioli, et al. "From Raw Data to FAIR Data: The FAIRification Workflow for Health Research." Methods of Information in Medicine 59, S 01 (June 2020): e21-e32. http://dx.doi.org/10.1055/s-0040-1713684.
Full textWu, Lei, Ran Ding, Zhaohong Jia, and Xuejun Li. "Cost-Effective Resource Provisioning for Real-Time Workflow in Cloud." Complexity 2020 (March 30, 2020): 1–15. http://dx.doi.org/10.1155/2020/1467274.
Full textToelle, B., and J. Lingley. "A METHOD FOR CONDUCTING A 'COMPLETE PROCESS' WORKFLOW ANALYSIS." APPEA Journal 40, no. 1 (2000): 596. http://dx.doi.org/10.1071/aj99039.
Full textPakdil, Mete Ercan, and Rahmi Nurhan Çelik. "Serverless Geospatial Data Processing Workflow System Design." ISPRS International Journal of Geo-Information 11, no. 1 (December 30, 2021): 20. http://dx.doi.org/10.3390/ijgi11010020.
Full textSimopoulos, Caitlin M. A., Zhibin Ning, Xu Zhang, Leyuan Li, Krystal Walker, Mathieu Lavallée-Adam, and Daniel Figeys. "pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies." Bioinformatics 36, no. 14 (May 5, 2020): 4171–79. http://dx.doi.org/10.1093/bioinformatics/btaa289.
Full textMoonsamy, Darisia, and Nikki Gentle. "SASCRiP: A Python workflow for preprocessing UMI count-based scRNA-seq data." F1000Research 11 (February 15, 2022): 190. http://dx.doi.org/10.12688/f1000research.75243.1.
Full textZhang, Bin, Le Yu, Yunbo Feng, Lijun Liu, and Shuai Zhao. "Application of Workflow Technology for Big Data Analysis Service." Applied Sciences 8, no. 4 (April 9, 2018): 591. http://dx.doi.org/10.3390/app8040591.
Full textWeigelt, Karin, Christoph Moehle, Thomas Stempfl, Bernhard Weber, and Thomas Langmann. "An integrated workflow for analysis of ChIP-chip data." BioTechniques 45, no. 2 (August 2008): 131–40. http://dx.doi.org/10.2144/000112819.
Full textYang, In Seok, and Sangwoo Kim. "Analysis of Whole Transcriptome Sequencing Data: Workflow and Software." Genomics & Informatics 13, no. 4 (2015): 119. http://dx.doi.org/10.5808/gi.2015.13.4.119.
Full textPendarvis, Ken, Ranjit Kumar, Shane C. Burgess, and Bindu Nanduri. "An automated proteomic data analysis workflow for mass spectrometry." BMC Bioinformatics 10, Suppl 11 (2009): S17. http://dx.doi.org/10.1186/1471-2105-10-s11-s17.
Full textBartoněk, Dalibor, Jirí Bureš, and Irena Opatřilová. "Workflow for Analysis of Enormous Amounts of Geographical Data." Advanced Science Letters 21, no. 12 (December 1, 2015): 3680–83. http://dx.doi.org/10.1166/asl.2015.6540.
Full textTrost, Nils, Eugen Rempel, Olga Ermakova, Srividya Tamirisa, Letiția Pârcălăbescu, Michael Boutros, Jan U. Lohmann, and Ingrid Lohmann. "WEADE: A workflow for enrichment analysis and data exploration." PLOS ONE 13, no. 9 (September 28, 2018): e0204016. http://dx.doi.org/10.1371/journal.pone.0204016.
Full textTchagna Kouanou, Aurelle, Daniel Tchiotsop, Romanic Kengne, Djoufack Tansaa Zephirin, Ngo Mouelas Adele Armele, and René Tchinda. "An optimal big data workflow for biomedical image analysis." Informatics in Medicine Unlocked 11 (2018): 68–74. http://dx.doi.org/10.1016/j.imu.2018.05.001.
Full textDeelman, Ewa, Christopher Carothers, Anirban Mandal, Brian Tierney, Jeffrey S. Vetter, Ilya Baldin, Claris Castillo, et al. "PANORAMA: An approach to performance modeling and diagnosis of extreme-scale workflows." International Journal of High Performance Computing Applications 31, no. 1 (July 27, 2016): 4–18. http://dx.doi.org/10.1177/1094342015594515.
Full textWu, Danny T. Y., Lindsey Barrick, Mustafa Ozkaynak, Katherine Blondon, and Kai Zheng. "Principles for Designing and Developing a Workflow Monitoring Tool to Enable and Enhance Clinical Workflow Automation." Applied Clinical Informatics 13, no. 01 (January 2022): 132–38. http://dx.doi.org/10.1055/s-0041-1741480.
Full textAditama, Redi, Zulfikar Achmad Tanjung, Widyartini Made Sudania, and Toni Liwang. "SMART-RDA: A Galaxy Workflow for RNA-Seq Data Analysis." KnE Life Sciences 3, no. 4 (March 27, 2017): 186. http://dx.doi.org/10.18502/kls.v3i4.703.
Full textElmsheuser, Johannes, Alessandro Di Girolamo, Andrej Filipcic, Antonio Limosani, Markus Schulz, David Smith, Andrea Sciaba, and Andrea Valassi. "ATLAS Grid Workflow Performance Optimization." EPJ Web of Conferences 214 (2019): 03021. http://dx.doi.org/10.1051/epjconf/201921403021.
Full textTalia, Domenico. "Workflow Systems for Science: Concepts and Tools." ISRN Software Engineering 2013 (January 8, 2013): 1–15. http://dx.doi.org/10.1155/2013/404525.
Full textKrachunov, Milko, Ognyan Kulev, Valeriya Simeonova, Maria Nisheva, and Dimitar Vassilev. "Manageable Workflows for Processing Parallel Sequencing Data." Serdica Journal of Computing 8, no. 1 (February 2, 2015): 1–14. http://dx.doi.org/10.55630/sjc.2014.8.1-14.
Full textMunir, Kamran, Saad Liaquat Kiani, Khawar Hasham, Richard McClatchey, Andrew Branson, and Jetendr Shamdasani. "Provision of an integrated data analysis platform for computational neuroscience experiments." Journal of Systems and Information Technology 16, no. 3 (August 5, 2014): 150–69. http://dx.doi.org/10.1108/jsit-01-2014-0004.
Full textCallahan, Ben J., Kris Sankaran, Julia A. Fukuyama, Paul J. McMurdie, and Susan P. Holmes. "Bioconductor workflow for microbiome data analysis: from raw reads to community analyses." F1000Research 5 (June 24, 2016): 1492. http://dx.doi.org/10.12688/f1000research.8986.1.
Full textCallahan, Ben J., Kris Sankaran, Julia A. Fukuyama, Paul J. McMurdie, and Susan P. Holmes. "Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses." F1000Research 5 (November 2, 2016): 1492. http://dx.doi.org/10.12688/f1000research.8986.2.
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