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Journal articles on the topic 'Control by RNA'

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Author: Grafiati
Published: 4 June 2021
Last updated: 1 February 2022

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1

Zong, Xinying, Vidisha Tripathi, and Kannanganattu V. Prasanth. "RNA splicing control." RNA Biology 8, no. 6 (November 2011): 968–77. http://dx.doi.org/10.4161/rna.8.6.17606.

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2

Sheppard, Terry L. "RNA takes control." Nature Chemical Biology 9, no. 12 (November 14, 2013): 754. http://dx.doi.org/10.1038/nchembio.1397.

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3

Blencowe, Benjamin J., and May Khanna. "RNA in control." Nature 447, no. 7143 (May 2007): 391–93. http://dx.doi.org/10.1038/447391a.

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4

HASEGAWA, TAKEMA, JUNKO TAKAHASHI, and HITOSHI IWAHASHI. "RNA Quality Control Using External Standard RNA." Polish Journal of Microbiology 67, no. 3 (2018): 347–53. http://dx.doi.org/10.21307/pjm-2018-042.

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5

Bellacosa, Alfonso, and Eric G. Moss. "RNA Repair: Damage Control." Current Biology 13, no. 12 (June 2003): R482—R484. http://dx.doi.org/10.1016/s0960-9822(03)00408-1.

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6

Chetnani, Bhaskar, and Alfonso Mondragón. "RNA exerts self-control." Nature 500, no. 7462 (July 28, 2013): 279–80. http://dx.doi.org/10.1038/nature12460.

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7

Li, Z. "RNA quality control: degradation of defective transfer RNA." EMBO Journal 21, no. 5 (March 1, 2002): 1132–38. http://dx.doi.org/10.1093/emboj/21.5.1132.

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8

Crombach, Anton, and Paulien Hogeweg. "Is RNA-dependent RNA polymerase essential for transposon control?" BMC Systems Biology 5, no. 1 (2011): 104. http://dx.doi.org/10.1186/1752-0509-5-104.

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9

Zhan, Y., J. S. Dhaliwal, P. Adjibade, J. Uniacke, R. Mazroui, and W. Zerges. "Localized control of oxidized RNA." Journal of Cell Science 128, no. 22 (October 8, 2015): 4210–19. http://dx.doi.org/10.1242/jcs.175232.

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10

Velema, Willem A., Anna M. Kietrys, and Eric T. Kool. "RNA Control by Photoreversible Acylation." Journal of the American Chemical Society 140, no. 10 (February 23, 2018): 3491–95. http://dx.doi.org/10.1021/jacs.7b12408.

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11

KORNBERG, R. "RNA polymerase II transcription control." Trends in Biochemical Sciences 21, no. 9 (September 1996): 325–26. http://dx.doi.org/10.1016/s0968-0004(96)20021-0.

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12

PENG, J., M. LIU, J. MARION, Y. ZHU, and D. H. PRICE. "RNA Polymerase II Elongation Control." Cold Spring Harbor Symposia on Quantitative Biology 63 (January 1, 1998): 365–70. http://dx.doi.org/10.1101/sqb.1998.63.365.

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13

Zhou, Qiang, Tiandao Li, and David H. Price. "RNA Polymerase II Elongation Control." Annual Review of Biochemistry 81, no. 1 (July 7, 2012): 119–43. http://dx.doi.org/10.1146/annurev-biochem-052610-095910.

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14

Ray, L. Bryan. "RNA processing for metabolic control." Science 360, no. 6394 (June 14, 2018): 1199.4–1200. http://dx.doi.org/10.1126/science.360.6394.1199-d.

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15

Arnstein, H. R. V. "Control of messenger RNA stability." FEBS Letters 361, no. 1 (March 13, 1995): 132. http://dx.doi.org/10.1016/0014-5793(18)90003-7.

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16

Cosman, David. "Control of messenger RNA stability." Immunology Today 8, no. 1 (January 1987): 16–17. http://dx.doi.org/10.1016/0167-5699(87)90826-7.

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17

Wisdom, Ron. "Control of messenger RNA stability." Trends in Genetics 10, no. 8 (August 1994): 298–99. http://dx.doi.org/10.1016/0168-9525(90)90016-y.

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18

Beaud, Georges. "Control of messenger RNA stability." Trends in Biochemical Sciences 19, no. 6 (June 1994): 261–62. http://dx.doi.org/10.1016/0968-0004(94)90155-4.

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19

Kornberg, R. "RNA polymerase II transcription control." Trends in Biochemical Sciences 21, no. 9 (September 1996): 325–26. http://dx.doi.org/10.1016/0968-0004(96)20021-0.

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20

Brown, Alistair J. P. "Control of messenger RNA stability." Trends in Cell Biology 4, no. 2 (February 1994): 68–69. http://dx.doi.org/10.1016/0962-8924(94)90017-5.

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21

Doma, Meenakshi K., and Roy Parker. "RNA Quality Control in Eukaryotes." Cell 131, no. 4 (November 2007): 660–68. http://dx.doi.org/10.1016/j.cell.2007.10.041.

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22

Suzuki, Toshihide, Paul J. Higgins, and Dana R. Crawford. "Control Selection for RNA Quantitation." BioTechniques 29, no. 2 (August 2000): 332–37. http://dx.doi.org/10.2144/00292rv02.

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23

Fasken, Milo B., and Anita H. Corbett. "Mechanisms of nuclear mRNA quality control." RNA Biology 6, no. 3 (July 2009): 237–41. http://dx.doi.org/10.4161/rna.6.3.8330.

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24

Michlewski, Gracjan, and Javier F. Cáceres. "Post-transcriptional control of miRNA biogenesis." RNA 25, no. 1 (October 17, 2018): 1–16. http://dx.doi.org/10.1261/rna.068692.118.

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25

Kirchner, Marion, and Sabine Schneider. "Gene expression control byBacillus anthracispurine riboswitches." RNA 23, no. 5 (February 16, 2017): 762–69. http://dx.doi.org/10.1261/rna.058792.116.

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26

Lin, C. L., Y. T. Huang, and J. D. Richter. "Transient CPEB dimerization and translational control." RNA 18, no. 5 (March 28, 2012): 1050–61. http://dx.doi.org/10.1261/rna.031682.111.

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27

Peltz, Stuart W., Ellen M. Welch, Christopher Trotta, Thomas Davis, and Allan Jacobson. "Targeting post-transcriptional control for drug discovery." RNA Biology 6, no. 3 (July 2009): 329–34. http://dx.doi.org/10.4161/rna.6.3.8953.

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28

GRAVELEY, B. R. "Small molecule control of pre-mRNA splicing." RNA 11, no. 3 (January 20, 2005): 355–58. http://dx.doi.org/10.1261/rna.7229705.

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29

McNally, Mark, T. "RNA processing control in avian retroviruses." Frontiers in Bioscience Volume, no. 13 (2008): 3869. http://dx.doi.org/10.2741/2975.

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30

Guo, Jiannan, and David H. Price. "RNA Polymerase II Transcription Elongation Control." Chemical Reviews 113, no. 11 (August 6, 2013): 8583–603. http://dx.doi.org/10.1021/cr400105n.

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31

Koziol, Magdalena J., and John L. Rinn. "RNA traffic control of chromatin complexes." Current Opinion in Genetics & Development 20, no. 2 (April 2010): 142–48. http://dx.doi.org/10.1016/j.gde.2010.03.003.

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32

Bügl, Hans, Eric B. Fauman, Bart L. Staker, Fuzhong Zheng, Sidney R. Kushner, Mark A. Saper, James C. A. Bardwell, and Ursula Jakob. "RNA Methylation under Heat Shock Control." Molecular Cell 6, no. 2 (August 2000): 349–60. http://dx.doi.org/10.1016/s1097-2765(00)00035-6.

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33

Heyse, G., F. Jonsson, W. J. Chang, and H. J. Lipps. "RNA-dependent control of gene amplification." Proceedings of the National Academy of Sciences 107, no. 51 (October 25, 2010): 22134–39. http://dx.doi.org/10.1073/pnas.1009284107.

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34

Breaker, R. R. "Gene expression control: Harnessing RNA switches." Gene Therapy 12, no. 9 (January 13, 2005): 725–26. http://dx.doi.org/10.1038/sj.gt.3302461.

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35

Abdelmohsen, Kotb, and Myriam Gorospe. "Noncoding RNA control of cellular senescence." Wiley Interdisciplinary Reviews: RNA 6, no. 6 (September 1, 2015): 615–29. http://dx.doi.org/10.1002/wrna.1297.

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36

Iacoangeli, Anna, Aderemi Dosunmu, Taesun Eom, Dimitre G. Stefanov, and Henri Tiedge. "Regulatory BC1 RNA in cognitive control." Learning & Memory 24, no. 7 (June 15, 2017): 267–77. http://dx.doi.org/10.1101/lm.045427.117.

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37

Houseley, Jonathan, John LaCava, and David Tollervey. "RNA-quality control by the exosome." Nature Reviews Molecular Cell Biology 7, no. 7 (July 2006): 529–39. http://dx.doi.org/10.1038/nrm1964.

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38

Du Toit, Andrea. "RNA stability control by Pol II." Nature Reviews Molecular Cell Biology 14, no. 3 (February 13, 2013): 128–29. http://dx.doi.org/10.1038/nrm3521.

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39

Simms, Carrie L., and Hani S. Zaher. "Quality control of chemically damaged RNA." Cellular and Molecular Life Sciences 73, no. 19 (May 7, 2016): 3639–53. http://dx.doi.org/10.1007/s00018-016-2261-7.

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40

Soller, Matthias, and Rupert Fray. "RNA modifications in gene expression control." Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1862, no. 3 (March 2019): 219–21. http://dx.doi.org/10.1016/j.bbagrm.2019.02.010.

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41

Guillier, Maude, and Francis Repoila. "RNA and gene control in bacteria." Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1863, no. 9 (September 2020): 194602. http://dx.doi.org/10.1016/j.bbagrm.2020.194602.

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42

D’Orazio, Karole N., and Rachel Green. "Ribosome states signal RNA quality control." Molecular Cell 81, no. 7 (April 2021): 1372–83. http://dx.doi.org/10.1016/j.molcel.2021.02.022.

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43

Akira, Shizuo, and Kazuhiko Maeda. "Control of RNA Stability in Immunity." Annual Review of Immunology 39, no. 1 (April 26, 2021): 481–509. http://dx.doi.org/10.1146/annurev-immunol-101819-075147.

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Abstract:
Posttranscriptional control of mRNA regulates various biological processes, including inflammatory and immune responses. RNA-binding proteins (RBPs) bind cis-regulatory elements in the 3′ untranslated regions (UTRs) of mRNA and regulate mRNA turnover and translation. In particular, eight RBPs (TTP, AUF1, KSRP, TIA-1/TIAR, Roquin, Regnase, HuR, and Arid5a) have been extensively studied and are key posttranscriptional regulators of inflammation and immune responses. These RBPs sometimes collaboratively or competitively bind the same target mRNA to enhance or dampen regulatory activities. These RBPs can also bind their own 3′ UTRs to negatively or positively regulate their expression. Both upstream signaling pathways and microRNA regulation shape the interactions between RBPs and target RNA. Dysregulation of RBPs results in chronic inflammation and autoimmunity. Here, we summarize the functional roles of these eight RBPs in immunity and their associated diseases.
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44

Kim, Joohwan, and Gina Lee. "Metabolic Control of m6A RNA Modification." Metabolites 11, no. 2 (January 30, 2021): 80. http://dx.doi.org/10.3390/metabo11020080.

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Nutrients and metabolic pathways regulate cell growth and cell fate decisions via epigenetic modification of DNA and histones. Another key genetic material, RNA, also contains diverse chemical modifications. Among these, N6-methyladenosine (m6A) is the most prevalent and evolutionarily conserved RNA modification. It functions in various aspects of developmental and disease states, by controlling RNA metabolism, such as stability and translation. Similar to other epigenetic processes, m6A modification is regulated by specific enzymes, including writers (methyltransferases), erasers (demethylases), and readers (m6A-binding proteins). As this is a reversible enzymatic process, metabolites can directly influence the flux of this reaction by serving as substrates and/or allosteric regulators. In this review, we will discuss recent understanding of the regulation of m6A RNA modification by metabolites, nutrients, and cellular metabolic pathways.
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45

Richards, Jamie, and Joel G. Belasco. "Riboswitch control of bacterial RNA stability." Molecular Microbiology 116, no. 2 (April 25, 2021): 361–65. http://dx.doi.org/10.1111/mmi.14723.

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46

Wachter, Andreas. "Riboswitch-mediated control of gene expression in eukaryotes." RNA Biology 7, no. 1 (January 2010): 67–76. http://dx.doi.org/10.4161/rna.7.1.10489.

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47

Widom, Julia R., Victoria Rai, Christopher E. Rohlman, and Nils G. Walter. "Versatile transcription control based on reversible dCas9 binding." RNA 25, no. 11 (July 18, 2019): 1457–69. http://dx.doi.org/10.1261/rna.071613.119.

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48

Abaza, I., and F. Gebauer. "Functional domains of Drosophila UNR in translational control." RNA 14, no. 3 (January 18, 2008): 482–90. http://dx.doi.org/10.1261/rna.802908.

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49

Foretek, Dominika, Jingyan Wu, Anita K. Hopper, and Magdalena Boguta. "Control ofSaccharomyces cerevisiaepre-tRNA processing by environmental conditions." RNA 22, no. 3 (January 4, 2016): 339–49. http://dx.doi.org/10.1261/rna.054973.115.

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50

Simpson, G. G., V. Quesada, I. R. Henderson, P. P. Dijkwel, R. Macknight, and C. Dean. "RNA processing and Arabidopsis flowering time control." Biochemical Society Transactions 32, no. 4 (August 1, 2004): 565–66. http://dx.doi.org/10.1042/bst0320565.

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Plants control their flowering time in order to ensure that they reproduce under favourable conditions. The components involved in this complex process have been identified using a molecular genetic approach in Arabidopsis and classified into genetically separable pathways. The autonomous pathway controls the level of mRNA encoding a floral repressor, FLC, and comprises three RNA-binding proteins, FCA, FPA and FLK. FCA interacts with the 3′-end RNA-processing factor FY to autoregulate its own expression post-transcriptionally and to control FLC. Other components of the autonomous pathway, FVE and FLD, regulate FLC epigenetically. This combination of epigenetic and post-transcriptional control gives precision to the control of FLC expression and flowering time.
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