Journal articles on the topic 'Computational Genomic'
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Nalbantoglu, Ozkan Ufuk, and Khalid Sayood. "Computational Genomic Signatures." Synthesis Lectures on Biomedical Engineering 6, no. 2 (May 31, 2011): 1–129. http://dx.doi.org/10.2200/s00360ed1v01y201105bme041.
Full textYelick, Katherine, Aydın Buluç, Muaaz Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, et al. "The parallelism motifs of genomic data analysis." Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 378, no. 2166 (January 20, 2020): 20190394. http://dx.doi.org/10.1098/rsta.2019.0394.
Full textHien, Le Thi Thu, Nguyen Tuong Van, Kim Thi Phuong Oanh, Nguyen Dang Ton, Huynh Thi Thu Hue, Nguyen Thuy Duong, Pham Le Bich Hang, and Nguyen Hai Ha. "Genomics and big data: Research, development and applications." Vietnam Journal of Biotechnology 19, no. 3 (October 13, 2021): 393–410. http://dx.doi.org/10.15625/1811-4989/16158.
Full textLu, Bingxin, and Hon Wai Leong. "Computational methods for predicting genomic islands in microbial genomes." Computational and Structural Biotechnology Journal 14 (2016): 200–206. http://dx.doi.org/10.1016/j.csbj.2016.05.001.
Full textSalamon, Hugh, Midori Kato-Maeda, Peter M. Small, Jorg Drenkow, and Thomas R. Gingeras. "Detection of Deleted Genomic DNA Using a Semiautomated Computational Analysis of GeneChip Data." Genome Research 10, no. 12 (November 21, 2000): 2044–54. http://dx.doi.org/10.1101/gr.152900.
Full textZUO, GuangHong, and BaiLin HAO. "Computational microbiology in genomic era." SCIENTIA SINICA Vitae 47, no. 2 (January 22, 2017): 159–70. http://dx.doi.org/10.1360/n052016-00312.
Full textLe, Vinh. "A computational framework to analyze human genomes." Journal of Computer Science and Cybernetics 35, no. 2 (June 3, 2019): 105–18. http://dx.doi.org/10.15625/1813-9663/35/2/13827.
Full textCui, Zhe, Jayaram Kancherla, Kyle W. Chang, Niklas Elmqvist, and Héctor Corrada Bravo. "Proactive visual and statistical analysis of genomic data in Epiviz." Bioinformatics 36, no. 7 (November 29, 2019): 2195–201. http://dx.doi.org/10.1093/bioinformatics/btz883.
Full textWan, Peng, and Dongsheng Che. "A Computational Framework for Tracing the Origins of Genomic Islands in Prokaryotes." International Scholarly Research Notices 2014 (October 28, 2014): 1–9. http://dx.doi.org/10.1155/2014/732857.
Full textChorbadjiev, Lubomir, Jude Kendall, Joan Alexander, Viacheslav Zhygulin, Junyan Song, Michael Wigler, and Alexander Krasnitz. "Integrated Computational Pipeline for Single-Cell Genomic Profiling." JCO Clinical Cancer Informatics, no. 4 (September 2020): 464–71. http://dx.doi.org/10.1200/cci.19.00171.
Full textFlanagan, Keith, Robert Stevens, Matthew Pocock, Pete Lee, and Anil Wipat. "Ontology for Genome Comparison and Genomic Rearrangements." Comparative and Functional Genomics 5, no. 6-7 (2004): 537–44. http://dx.doi.org/10.1002/cfg.436.
Full textChari, Raj, William W. Lockwood, and Wan L. Lam. "Computational Methods for the Analysis of Array Comparative Genomic Hybridization." Cancer Informatics 2 (January 2006): 117693510600200. http://dx.doi.org/10.1177/117693510600200007.
Full textOsipowski, Paweł, Magdalena Pawełkowicz, Michał Wojcieszek, Agnieszka Skarzyńska, Zbigniew Przybecki, and Wojciech Pląder. "A high-quality cucumber genome assembly enhances computational comparative genomics." Molecular Genetics and Genomics 295, no. 1 (October 16, 2019): 177–93. http://dx.doi.org/10.1007/s00438-019-01614-3.
Full textCarpentieri, Bruno. "Compression of Next-Generation Sequencing Data and of DNA Digital Files." Algorithms 13, no. 6 (June 24, 2020): 151. http://dx.doi.org/10.3390/a13060151.
Full textBertelli, Claire, Keith E. Tilley, and Fiona S. L. Brinkman. "Microbial genomic island discovery, visualization and analysis." Briefings in Bioinformatics 20, no. 5 (June 3, 2018): 1685–98. http://dx.doi.org/10.1093/bib/bby042.
Full textMartinez, Manuel. "Computational Tools for Genomic Studies in Plants." Current Genomics 17, no. 6 (October 13, 2016): 509–14. http://dx.doi.org/10.2174/1389202917666160520103447.
Full textRamanathan, Chandra Sekar, and Ethan Will Taylor. "Computational genomic analysis of hemorrhagic fever viruses." Biological Trace Element Research 56, no. 1 (January 1997): 93–106. http://dx.doi.org/10.1007/bf02778985.
Full textDeuber, Dominic, Christoph Egger, Katharina Fech, Giulio Malavolta, Dominique Schröder, Sri Aravinda Krishnan Thyagarajan, Florian Battke, and Claudia Durand. "My Genome Belongs to Me: Controlling Third Party Computation on Genomic Data." Proceedings on Privacy Enhancing Technologies 2019, no. 1 (January 1, 2019): 108–32. http://dx.doi.org/10.2478/popets-2019-0007.
Full textTian, Long, Reza Mazloom, Lenwood S. Heath, and Boris A. Vinatzer. "LINflow: a computational pipeline that combines an alignment-free with an alignment-based method to accelerate generation of similarity matrices for prokaryotic genomes." PeerJ 9 (March 24, 2021): e10906. http://dx.doi.org/10.7717/peerj.10906.
Full textSankoff, David, and Lani Haque. "The Distribution of Genomic Distance between Random Genomes." Journal of Computational Biology 13, no. 5 (June 2006): 1005–12. http://dx.doi.org/10.1089/cmb.2006.13.1005.
Full textPradhan, Manaswini. "Computational Machine Learning Application on Microarray Genomic Data." International Journal of Bioinformatics and Biological Science 5, no. 2 (2017): 51. http://dx.doi.org/10.5958/2321-7111.2017.00007.5.
Full textHandl, J., J. Knowles, and D. B. Kell. "Computational cluster validation in post-genomic data analysis." Bioinformatics 21, no. 15 (May 24, 2005): 3201–12. http://dx.doi.org/10.1093/bioinformatics/bti517.
Full textXu, Ying. "Computational Challenges in Deciphering Genomic Structures of Bacteria." Journal of Computer Science and Technology 25, no. 1 (January 2010): 53–70. http://dx.doi.org/10.1007/s11390-010-9305-5.
Full textRasool, Rabia, Inam Ullah, Bismillah Mubeen, Sultan Alshehri, Syed Sarim Imam, Mohammed M. Ghoneim, Sami I. Alzarea, et al. "Theranostic Interpolation of Genomic Instability in Breast Cancer." International Journal of Molecular Sciences 23, no. 3 (February 7, 2022): 1861. http://dx.doi.org/10.3390/ijms23031861.
Full textPapanicolaou, Alexie. "The life cycle of a genome project: perspectives and guidelines inspired by insect genome projects." F1000Research 5 (January 5, 2016): 18. http://dx.doi.org/10.12688/f1000research.7559.1.
Full textMohammed Yakubu, Abukari, and Yi-Ping Phoebe Chen. "Ensuring privacy and security of genomic data and functionalities." Briefings in Bioinformatics 21, no. 2 (February 12, 2019): 511–26. http://dx.doi.org/10.1093/bib/bbz013.
Full textBahmani, Amir, Kyle Ferriter, Vandhana Krishnan, Arash Alavi, Amir Alavi, Philip S. Tsao, Michael P. Snyder, and Cuiping Pan. "Swarm: A federated cloud framework for large-scale variant analysis." PLOS Computational Biology 17, no. 5 (May 12, 2021): e1008977. http://dx.doi.org/10.1371/journal.pcbi.1008977.
Full textTahir Ul Qamar, Muhammad, Xitong Zhu, Feng Xing, and Ling-Ling Chen. "ppsPCP: a plant presence/absence variants scanner and pan-genome construction pipeline." Bioinformatics 35, no. 20 (March 9, 2019): 4156–58. http://dx.doi.org/10.1093/bioinformatics/btz168.
Full textHong, Seungpyo, and Dongsup Kim. "Computational characterization of chromatin domain boundary-associated genomic elements." Nucleic Acids Research 45, no. 18 (August 23, 2017): 10403–14. http://dx.doi.org/10.1093/nar/gkx738.
Full textDubchak, Inna, Sandhya Balasubramanian, Sheng Wang, Cem Meyden, Dinanath Sulakhe, Alexander Poliakov, Daniela Börnigen, et al. "An Integrative Computational Approach for Prioritization of Genomic Variants." PLoS ONE 9, no. 12 (December 15, 2014): e114903. http://dx.doi.org/10.1371/journal.pone.0114903.
Full textDeichmann, Ute. "Special Issue: Genomic Regulation: Experiments, Computational Modeling, and Philosophy." Journal of Computational Biology 26, no. 7 (July 2019): 625–28. http://dx.doi.org/10.1089/cmb.2019.29021.ud.
Full textDas, R., N. Dimitrova, Z. Xuan, R. A. Rollins, F. Haghighi, J. R. Edwards, J. Ju, T. H. Bestor, and M. Q. Zhang. "Computational prediction of methylation status in human genomic sequences." Proceedings of the National Academy of Sciences 103, no. 28 (July 3, 2006): 10713–16. http://dx.doi.org/10.1073/pnas.0602949103.
Full textTanaka, H. "Computational approach towards challenges in the post-genomic era." Yearbook of Medical Informatics 12, no. 01 (August 2003): 621–24. http://dx.doi.org/10.1055/s-0038-1638167.
Full textSimillion, Cedric, Klaas Vandepoele, and Yves Van de Peer. "Recent developments in computational approaches for uncovering genomic homology." BioEssays 26, no. 11 (2004): 1225–35. http://dx.doi.org/10.1002/bies.20127.
Full textHou, M., P. Berman, C. H. Hsu, and R. S. Harris. "HomologMiner: looking for homologous genomic groups in whole genomes." Bioinformatics 23, no. 8 (February 18, 2007): 917–25. http://dx.doi.org/10.1093/bioinformatics/btm048.
Full textRobinson, Tony, Jim Harkin, and Priyank Shukla. "Hardware acceleration of genomics data analysis: challenges and opportunities." Bioinformatics 37, no. 13 (May 25, 2021): 1785–95. http://dx.doi.org/10.1093/bioinformatics/btab017.
Full textPinheiro, M., V. Afreixo, G. Moura, A. Freitas, M. A. S. Santos, and J. L. Oliveira. "Statistical, Computational and Visualization Methodologies to Unveil Gene Primary Structure Features." Methods of Information in Medicine 45, no. 02 (2006): 163–68. http://dx.doi.org/10.1055/s-0038-1634061.
Full textSridhar, Jayavel, and Paramasamy Gunasekaran. "Computational Small RNA Prediction in Bacteria." Bioinformatics and Biology Insights 7 (January 2013): BBI.S11213. http://dx.doi.org/10.4137/bbi.s11213.
Full textRodriguez, Oscar L., Anna Ritz, Andrew J. Sharp, and Ali Bashir. "MsPAC: a tool for haplotype-phased structural variant detection." Bioinformatics 36, no. 3 (August 9, 2019): 922–24. http://dx.doi.org/10.1093/bioinformatics/btz618.
Full textAji, Oktira Roka. "COMPARATIVE GENOME OF TWO STRAIN MORAXELLA CATARRHALIS USING IN SILICO ANALYSIS." Journal of Islamic Pharmacy 2, no. 2 (November 18, 2017): 1. http://dx.doi.org/10.18860/jip.v2i2.4504.
Full textvan den Broek, Evert, Stef van Lieshout, Christian Rausch, Bauke Ylstra, Mark A. van de Wiel, Gerrit A. Meijer, Remond J. A. Fijneman, and Sanne Abeln. "GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes." F1000Research 5 (September 19, 2016): 2340. http://dx.doi.org/10.12688/f1000research.9259.1.
Full textvan den Broek, Evert, Stef van Lieshout, Christian Rausch, Bauke Ylstra, Mark A. van de Wiel, Gerrit A. Meijer, Remond J. A. Fijneman, and Sanne Abeln. "GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes." F1000Research 5 (July 6, 2017): 2340. http://dx.doi.org/10.12688/f1000research.9259.2.
Full textLi, Xiangyang, Fang Chen, and Yunpeng Chen. "Gcluster: a simple-to-use tool for visualizing and comparing genome contexts for numerous genomes." Bioinformatics 36, no. 12 (March 28, 2020): 3871–73. http://dx.doi.org/10.1093/bioinformatics/btaa212.
Full textNik-Zainal, S. "Abstract MS1-2: Genomics of DNA repair defects in breast cancer." Cancer Research 82, no. 4_Supplement (February 15, 2022): MS1–2—MS1–2. http://dx.doi.org/10.1158/1538-7445.sabcs21-ms1-2.
Full textRaza, Shahid, and Hira Mubeen. "Computational Analysis of Genomic Regions of Human Insulin Receptor Gene." Journal of Advances in Biology & Biotechnology 8, no. 2 (January 10, 2016): 1–7. http://dx.doi.org/10.9734/jabb/2016/26715.
Full textSuhai, Sándor. "Computational Methods in Cancer Research The Hierarchy of Genomic Information." Interdisciplinary Science Reviews 14, no. 3 (September 1, 1989): 225–32. http://dx.doi.org/10.1179/030801889789797989.
Full textLehrbach, N. J., and E. A. Miska. "Functional genomic, computational and proteomic analysis of C. elegans microRNAs." Briefings in Functional Genomics and Proteomics 7, no. 3 (March 9, 2008): 228–35. http://dx.doi.org/10.1093/bfgp/eln024.
Full textCarbone, Alessandra. "Computational Prediction of Genomic Functional Cores Specific to Different Microbes." Journal of Molecular Evolution 63, no. 6 (November 10, 2006): 733–46. http://dx.doi.org/10.1007/s00239-005-0250-9.
Full textTadei, Roberto, and Nicola Bellomo. "Special issue on modeling and computational methods in genomic sciences." Computers & Mathematics with Applications 55, no. 5 (March 2008): 863–66. http://dx.doi.org/10.1016/j.camwa.2006.12.087.
Full textKravchenko-Balasha, Nataly, Simcha Simon, R. D. Levine, F. Remacle, and Iaakov Exman. "Computational Surprisal Analysis Speeds-Up Genomic Characterization of Cancer Processes." PLoS ONE 9, no. 11 (November 18, 2014): e108549. http://dx.doi.org/10.1371/journal.pone.0108549.
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