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1

Frenkel, Evgeni Mikhailovich. "Competition and Coexistence in Yeast Experimental Evolution." Thesis, Harvard University, 2016. http://nrs.harvard.edu/urn-3:HUL.InstRepos:33493568.

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Natural selection gives rise to biodiversity by purging the less-fit among variants that are too similar (a principle known as character displacement), but to predict how fit or different an organism needs to be to survive is hard. In the simplest theoretical case, the probability whether one lineage versus another survives depends only on their relative fitness and random fluctuations. In more complex scenarios, this probability may depend on the fitness of all the other lineages in the population, mutations that these and other lineages acquire before the outcome of competition is decided, and additional ecological interactions. These complexities evolve readily in laboratory microbial populations, suggesting that they are the norm in Nature, and have been extensively studied theoretically. This thesis provides one of the few empirical examples in which the evolution and mechanism of some of these complexities have been characterized and modeled sufficiently to make basic predictions, such as whether a mutation will fix or go extinct, which competing lineages may or may not coexist, and how do these processes relate? This work was carried out in an established system for experimental evolution, populations of asexual budding yeast (S. cerevisiae) in microtiter plates. Chapter 2 demonstrates an experimental design and modeling approach to infer the distribution of fitness effects of beneficial mutations from the population-dynamics of genetic markers. The inferred distribution accurately predicts fixation probabilities of lineages and adaptation rates of populations. Chapter 3 describes a new example of spontaneously-evolved coexistence between types competing for the same resources, including the physical mechanism, genetic basis and a mathematical model of the coexistence. The conclusion provides additional analyses to connect the findings from these two chapters and discusses their implications for microbial evolution more generally and directions for future work.
Biophysics
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2

Eilts, J. Alexander. "The Physiology of Exploitation Competition." Diss., The University of Arizona, 2007. http://hdl.handle.net/10150/195710.

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Water is a critical resource for which plants compete in many terrestrial communities. In arid communities where water most limits plant growth, rainfall events occur in discrete, pulsed events. These pulses of water create highly variable soil moisture availabilities. Plant species respond differently to variation in soil water availabilities throughout a season and between years. How species vary in their responses to a range of water availabilities is thought to influence community and ecosystem properties. Many previously proposed hypotheses are not suitable to explain rapidly fluctuating resource availabilities or numerous input events throughout the growing season. This dissertation uses variation in water availability as a model resource to examine how species characteristics influence the process of exploitation competition within plant communities.Experiments were conducted to examine variation in growing season, exploitation competition between several pairs of co-occurring species in the Sonoran desert. Three separate studies evaluated several components of community dynamics thought to be influenced by exploitation competition. Spatial attributes of exploitation competition were assessed by measuring the performance of a deep-rooted species across the boundary of a natural expansion of a shallowly rooted species. Then, neighborhood composition was varied for species of similar growth-form to address the affects of species characteristics to shifts in abundances under field conditions. Lastly, species from the neighborhood composition study were placed under controlled, manipulated water availabilities to measure their fundamental operational conditions.Performances of plant species in all experiments were assessed using a combination of physiological and vegetative measurements, capturing the responses of the plants to both the dynamic growth conditions during the growing season, and integrated measures of plant performance post growth season. A shared preference was found for all species, where the performance of all species was greatest when water was most available in the soil profile. This work suggests the mechanism within a functional type by which plants coexist at various abundances is in part due to the variation in responses to temporal resource gradients. The variation in availability of resources and the species composition within the community should be considered in studies of competition between plant species.
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3

Gaudet, Connie Lee. "Competition in shoreline plant communities: A comparative approach." Thesis, University of Ottawa (Canada), 1993. http://hdl.handle.net/10393/6516.

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I tested the general hypothesis that competitive ability is an important determinant of pattern in shoreline plant communities. Specifically I tested four predictions generated from this general hypothesis: (1) the competitive performance of plant species is related to their distribution along natural gradients of fertility and standing crop; (2) the competitive performance of plant species is related to measurable plant traits; (3) the competitive performance of plant species is not significantly affected by changing nutrient supply; and (4) there is an "evolutionary trade-off" between nutrient stress tolerance of species and competitive performance that underlies the distribution of species along natural gradients of fertility and standing crop. These questions were posed at a broad, multi-species scale using comparative measures of competitive performance, stress tolerance, and morphology from over 40 shoreline plant species, and field distribution data from several natural shoreline communities in Ontario, Nova Scotia and Quebec. Results showed that the experimentally determined measure of the relative competitive performance of a species was significantly correlated with its position along natural gradients of fertility and standing crop; and with simple measurable plant traits, in particular above-ground biomass (r$\sb{\rm s}$ = 0.92; p .0001). Results also showed that the competitive performance of species under high and low nutrient conditions was significantly correlated after two growing seasons (r$\sb{\rm s}$ = 0.76; P .001); and that stress tolerance, measured as the relative biomass production of species under low nutrient conditions, was inversely correlated with competitive performance (r = $-$0.62, p .005).
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4

Hatfield, Jeffrey Scott. "Diffusion analysis and stationary distribution of the lottery competition model /." The Ohio State University, 1986. http://rave.ohiolink.edu/etdc/view?acc_num=osu1487322984314846.

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5

Wheeler, Kelsey M. (Kelsey Morgan). "The influence of mucin glycans on microbial virulence and competition." Thesis, Massachusetts Institute of Technology, 2021. https://hdl.handle.net/1721.1/130819.

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Thesis: Ph. D., Massachusetts Institute of Technology, Department of Biology, February, 2021
Cataloged from the official PDF of thesis.
Includes bibliographical references.
The human body is colonized by trillions of microbes, many of which reside in a layer of mucus that covers all wet epithelia in the body. In this way, mucus serves as the first line of defense to the host, simultaneously protecting against pathogens while providing a habitat where commensal microbes thrive. It has long been known that defects in mucus production or biochemistry are associated with opportunistic infections; however, few studies have focused on how components of the intact mucus barrier interact with resident microbes to promote health. In this thesis, I fill this gap using a clinically relevant 3-dimensional model of the mucus environment based on mucin glycoproteins, the major structural component of mucus. This in vitro culturing system mimics the natural mucus environment, where mucin polymer domains interact and entangle into a flexible hydrogel, as opposed to 2-dimensional surface coatings, which can create artificially concentrated amounts of surface mucins. I apply this system to answer three major conceptual questions, separated into three projects. In the first project, I study the ability of mucin and their attached glycans to regulate interactions between a clinically-important opportunistic pathogen, Pseudomonas aeruginosa, and its host. I then investigate the underlying genetic mechanisms that enable P. aeruginosa to sense and respond to the mucus environment, and explore how mucin glycan-sensing in turn impacts microbe-microbe interactions in the mucosal niche. I end by investigating how mucin glycan-mediated microbial regulation modulates the composition of complex microbial communities isolated from the human oral cavity. Collectively, the work presented in this thesis lays the framework for characterizing the therapeutic nature of mucin and how specific mucin glycan moieties modulate the behavior, pathogenicity, and competitive interactions of host-associated microbes.
by Kelsey M. Wheeler.
Ph. D.
Ph.D. Massachusetts Institute of Technology, Department of Biology
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6

Dickens, John. "Extracting fish abundance indices from recreational fishing competition data." Master's thesis, University of Cape Town, 2015. http://hdl.handle.net/11427/19954.

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Over-exploited fisheries result in global economic losses and can lead to the degradation of marine ecosystems. Commercial and recreational fisheries have grown substantially over the past decades placing fish stocks under increasing pressure. Fisheries management aims to conserve and restore stocks to economically and environmentally sustainable levels. Stock assessments are mostly based on analyses of fishery-dependent data, however, this practice often neglects uneconomically important species, making ecosystem approaches to fisheries management challenging. Competitive recreational angling has the potential to provide accurate and consistent records of catch and effort data for a variety of unassessed fish species as well as data for currently assessed commercial species, but without the market influence on targeting. The data from five boat based recreational competitions in the Western Cape were studied. Records for the competitions varied in length with the longest dataset from running from 1994 to 2014, and the shortest from 2003 to 2014. The competitions were divided into three inshore and two offshore groups with each targeting different assemblages of fish. In total 38 species of teleost were caught, but at least 90% of the total catch for each competition was comprised of seven species or less. Catch composition was determined for each competition and the standardised catch per unit effort (CPUE) of the ten most abundant species across the competitions were assessed. CPUE trends for red roman, snoek and geelbek were comparable to commercial fishery-dependent CPUE data. The targeting of specific species in the multi-species fishery noticeably influenced CPUE values. Catch limits resulted in lower estimations of the CPUE for snoek, and potentially for red stump nose. Boat based competition data is accurate and consistent enough for the extraction of abundance indices for certain species. Further work on these data may involve the standardisation of CPUE values to account for targeting in the multi-species fishery. With a large number of boat based competitive anglers in the country, there is a scope for using these data for stock assessments, either as stand-alone data sources, or as an adjunct to well-established commercial catch time-series.
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7

Danielson-Francois, Anne. "Variation in Tetragnathid spermathecal structures and sperm competition with descriptions of natural history." Diss., The University of Arizona, 2002. http://hdl.handle.net/10150/279954.

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The study of variation in arachnid genitalic structures has contributed to the fields of systematics and sexual selection. Simon (1892--1903) in his Histoire Naturelle des Araignees first divided the ecribellate higher spiders into two groups, the Haplogynae and Entelegynae, using reproductive morphology. Spider genitalia have been used as a taxonomic tool for distinguishing between taxa because of their species-specific morphological variation. Variation in spider genitalic morphology has inspired evolutionary biologists to test mechanisms of sexual selection by which the variation could evolve, ranging from Fisherian run-away selection, chase-away selection, and sperm competition. The Tetragnathidae are particularly interesting for a comparison between haplogyne and entelegyne reproductive morphologies. Within this entelegyne family, a reversal to haplogyny has occurred. Fifteen representative members of this family and four outgroup taxa were examined with scanning and transmission electron microscopy in order to describe the fine structure of spermathecae, including the distribution and density of spermathecal gland pores. While the function(s) of the glandular secretion are unknown, the distribution and density of spermathecal gland pores is discussed with regard to possible functions of the glandular secretion. The potential influence of spermathecal gland secretions on mating behavior and sperm competition is considered. Sperm release patterns have been examined in entelegynes, but previously were not available for haplogynes. The relationship between copulation duration and sperm release was determined in Tetragnatha versicolor, the first examination of sperm release patterns in any haplogyne spider. In this species, copulation duration is not proportional to sperm release. To examine the relative influence of spermathecal morphology and numerical sperm competition on paternity, sperm release and paternity was assessed in the entelegyne Nephila clavipes and the haplogyne Tetragnatha versicolor. The data clearly support differential sperm release between males as the cause of previously reported first-male advantage in Nephila clavipes and the mixed paternity found for N. clavipes and Tetragnatha versicolor in this study. The natural history, mating behavior, and sperm release were determined for a previously unstudied tetragnathid species, Glenognatha emertoni . This is the second examination of haplogyne sperm release behavior as well as the first description of an unusual escape behavior.
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8

Sterkenburg, Neilda Jane. "Intraspecific competition in yellow nutsedge (Cyperus esculentus L.)." Thesis, McGill University, 1989. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=59234.

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The main objective of this study was to examine the effects of intraspecific competition on the growth and reproduction of yellow nutsedge. A field experiment was conducted to examine twelve tuber densities of yellow nutsedge, ranging from 1 to 1000 tubers/m$ sp2$. Results indicate that spring tuber populations of 100 tubers/m$ sp2$ and lower require close to 100% control of the infestation in order to prevent the yellow nutsedge population from increasing. Yellow nutsedge spring tuber population does not appear to influence tuber distribution in the soil profile. All tuber densities examined produced the greatest proportion of tubers in the top 20 cm of the soil profile. Tuber and shoot production increased as initial yellow nutsedge tuber populations increased from 1 to 1000 tubers/m$ sp2$, as did tuber and shoot biomass. Consequently, intraspecific competition does not appear to come into effect at tuber populations of 1000 tubers/m$ sp2$ and less.
Predictions were made to determine the spread of yellow nutsedge based on an infestation of a single tuber. A single yellow nutsedge tuber could grow to infest an area of 50 m$ sp2$ in 5 years. Information concerning the effect of spring tuber density on the reproduction and spread of yellow nutsedge should be used in formulating control strategies for this weed.
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9

Hunter, Fiona M. "Sperm competition in the Northern fulmar (Fulmaris glacialis)." Thesis, University of Sheffield, 1991. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.304668.

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10

Sharp, Martin A. "Social dominance and biology : investigating female hormonal response to non-physical competition." Thesis, University of Edinburgh, 2006. http://hdl.handle.net/1842/29359.

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The thesis explores the relationship between salivary testosterone (T), cortisol (F), and non-physical competition in women. In order to address widely acknowledged difficulties with determining levels of female T, particularly the biologically active ‘free’ fraction as measured in saliva, a highly sensitive ‘in-house’ enzyme-linked immunosorbant assay (ELISA) was optimised and validated. Assay sensitivity was 0.5pg/mL. By determining a comprehensive picture of the daily activity of salivary T in 34 healthy female subjects, it was possible to demonstrate that T follows a circadian rhythm the relative levels of which differ over two non-consecutive days. Moreover, throughout the course of the day T levels were highly variable, with episodic fluctuation of individual data points exceeding 83% of 9am levels. A quasi-experimental study examined changes in T and F in relation to non-physical dyadic encounters. Twenty-four females (ages 19-24 years) competed in a knockout tournament involving the wood-block game ‘Jenga’. They collected comprehensive salivary samples for baseline, pre- and post-competition phases. Subjects additionally reported mood states and answered questions concerning their participation in the competition. Whilst the comprehensive T data resist easy interpretation, compared against baseline, pre-comp T appeared un-responsive in anticipation of competition even though F levels did rise in the 3 hours prior to competition. Compared with levels immediately pre-competition, 1 hr post-competition T levels were higher in winners than losers. F-levels, conversely, rose in losers and fell in winners. These results illustrate that, similar to males, women demonstrate a dynamic endocrine response to competition. Moreover, choice of competitive task and salivary sampling regimens may, to a large extent, account for the equivocal findings in the literature.
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11

Trauben, Bruce Kenneth. "Potential competition among young-of-year fish in western Lake Erie /." The Ohio State University, 1991. http://rave.ohiolink.edu/etdc/view?acc_num=osu14876939231966.

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12

Belcher, Joyce W. "The ecology of alvar vegetation in Canada: Description, patterns, competition." Thesis, University of Ottawa (Canada), 1992. http://hdl.handle.net/10393/7546.

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My research focused on (1) describing the vegetation of Canadian alvars, (2) examining ecological patterns in this system and (3) measuring the intensity of plant competition which occurs there. In chapter 1, ordination and classification techniques were used to describe alvar vegetation at two scales: local (within one alvar) and regional (among 4 alvar sites). At the local scale, changes in species composition corresponded to changes in soil depth and biomass. At the regional scale species composition was related primarily to geographic location--the southern site was distinct from the eastern and northern sites. Relationships between species distributions and soil depth and biomass could also be detected at this scale. In chapter 2, I examined the empirical relationships among important alvar state variables (soil depth, biomass and species richness) in order to test the predictions of the species richness model (forwarded by Grime and others) in a low biomass terrestrial system, and compare the pattern among 4 alvar sites. At all sites biomass was positively correlated with soil depth, suggesting that the soil depth gradient represents a gradient of increasing below-ground resources and decreasing above-ground resources. At each alvar, species richness varied curvilinearly with both biomass and soil depth; maximum species richness occurred at intermediate levels of these factors, as predicted by species richness models. However, the predicted decline in species richness at higher levels of biomass or soil depth was evident at only one site. In chapter 3, I present the results of a field experiment which measured the intensity of total, root and shoot competition along the gradient of soil depth at one alvar. Over all sites, the intensities of total and root competition were greater than zero; that of shoot competition was not. I suggest a model which relates the various effects of competition and of mutualism to the biomass range of interest. (Abstract shortened by UMI.)
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13

Yandek, Lindsay E. "MULTIPLE SUBSTRATE KINETICS OF RIBONUCLEASE P: RELATIVE RATE CONSTANT DETERMINATION THROUGH INTERNAL COMPETITION." Case Western Reserve University School of Graduate Studies / OhioLINK, 2013. http://rave.ohiolink.edu/etdc/view?acc_num=case1371041699.

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14

Collins, Douglas. "Competition between the mating types of Chlamydomonas reinhardtii." Thesis, McGill University, 1993. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=68160.

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Heterothallic, facultatively sexual populations are vulnerable to the loss of a mating type by natural selection during periods of asexual reproduction. Experiments are described which demonstrate a competitive difference between the mating types of Chlamydomonas reinhardtii, a unicellular green alga with two isogamous mating types, mt + and mt $-.$ When grown vegetatively under phototrophic (light) conditions, mt + outcompetes mt $-.$ Assays of the growth parameters of isolated spores suggest that mt + has a higher growth rate than mt $-$ in the light, and that mt $-$ has a higher growth rate than mt + in heterotrophic (dark) growth conditions.
A literature review shows that sampling from natural populations of heterothallic, facultatively sexual species often yields only one mating type or significantly skewed mating-type distributions. This indicates that competition between mating types and the consequent loss of one mating type may be common in these populations.
A discussion of current theories on the evolution of heterothallism as well as the results of a simulation model reveal that heterothallism will spread if any fitness reduction is suffered by in-crossing homothallic individuals. However, fitness differences between the heterothallic alleles allow the invasion of a homothallic allele into a heterothallic population.
The implications of mating type competition on the maintenance and distribution of heterothallic populations in nature are discussed. It is argued that heterothallic, facultatively sexual populations commonly lose the potential for sex because of the loss of one mating-type allele. The prediction is made that homothallism is more common among facultatively sexual organisms than it is among obligately sexual organisms.
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15

Drakare, Stina. "The Role of Picophytoplankton in Lake Food Webs." Doctoral thesis, Uppsala University, Limnology, 2002. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-2710.

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Picophytoplankton were inferior competitors for inorganic phosphorus compared to heterotrophic bacteria. This may be due to the source of energy available for the heterotrophs, while cell-size was of minor importance. However, picophytoplankton were superior to large phytoplankton in the competition for nutrients at low concentrations.

Biomass of picophytoplankton was low in brownwater lakes and high in clearwater lakes, compared to the biomass of heterotrophic bacteria. The results suggest that picophytoplankton are inferior to heterotrophic bacteria in the competition for inorganic nutrients in brownwater lakes, where the production of heterotrophic bacteria is subsidized by humic dissolved organic carbon (DOC)

Relative to large phytoplankton, picophytoplankton were most important in lakes with intermediate water colour, despite the fact that the lowest nutrient concentrations were found in the clearwater lakes. Large phytoplankton in the clearwater lakes may be able to overcome nutrient competition with picophytoplankton by vertical migration.

In conclusion, changes in nutrient content, light availability and concentrations of DOC affect the interactions of heterotrophic bacteria, picophytoplankton and large phytoplankton and are therefore important factors for the structure of the food web in the pelagic zones of lakes.

Picophytoplankton (planktonic algae and cyanobacteria, < 2 µm) constitute an important component of pelagic food webs. They are linked to larger phytoplankton and heterotrophic bacteria through complex interactions including competition, commensalism and predation. In this thesis, field and laboratory studies on the competitive ability of picophytoplankton are reported.

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16

Idjadi, Joshua Aziz. "Aggregation promotes species coexistence among reef-building corals." Access to citation, abstract and download form provided by ProQuest Information and Learning Company; downloadable PDF file, 96 p, 2008. http://proquest.umi.com/pqdweb?did=1609283431&sid=6&Fmt=2&clientId=8331&RQT=309&VName=PQD.

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17

Bosson, Andrew D. (Andrew David). "Modulation of Ago-miRNA regulatory networks by cis-sequence elements and target competition." Thesis, Massachusetts Institute of Technology, 2014. http://hdl.handle.net/1721.1/89938.

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Thesis: Ph. D., Massachusetts Institute of Technology, Department of Biology, 2014.
Vita. Cataloged from PDF version of thesis.
Includes bibliographical references.
regulators of gene expression in a wide range of organisms and biological processes. Each miRNA guides Argonaute (Ago) protein complexes to target and repress hundreds of genes in a sequence-dependent manner. To identify all targets of miRNA regulation, we performed UV crosslinking and immunoprecipitation (CLIP) of Ago complexes in mouse embryonic (ESC) and mesenchymal (MSC) stem cell lines. We also captured the genome-wide miRNA-independent binding footprint of Ago by performing CLIP in cells that lack Dicer, an enzyme required for mature miRNA biogenesis. We surprisingly found that Ago bound a similar set of genes in the absence of Dicer, and this overlap in target genes was due partially to residual, unprocessed miRNAs in the Dicer KO cells. Other potential sites of miRNA-independent Ago interactions, such as histone transcripts and poly-A cleavage and polyadenylation sites, were also identified. One Ago CLIP dataset revealed the enrichment for a G-rich sequence motif at Ago target sites. We later demonstrated that the G-motif is not directly bound to Ago but rather is enriched near miRNA-guided Ago binding sites. Its presence near miRNA target sites is associated with stronger repression of Ago-miRNA targets. Fortuitously, the original Ago CLIP dataset that identified the G-motif was later shown to likely contain target sites of another co-immunoprecipitating RNA binding protein (RBP). Using mass spectroscopy of Ago antibody immunoprecipitations from Ago KO cells, we identified a list of interacting RBPs that could potentially augment Ago-miRNA activity through the G-motif. To investigate target competition in miRNA networks, we related our CLIP analysis of genome-wide, quantitative Ago binding to measurements of absolute miRNA and target RNA concentrations. We found that all miRNAs other than the miR-290 family in ESCs and let-7 family in MSCs were expressed at concentrations below their total target pool. However, 8-12 miRNA families were expressed at near or greater than equimolar ratios with their pool of high affinity targets, and this affinity-partitioned stoichiometry led to significant Ago accumulation and repression of high affinity target sites despite little consequential binding at low affinity sites. Single-cell reporter assays demonstrated that high expressed miRNAs are not susceptible to physiological inductions of competing target transcripts but targets of lower expressed miRNAs are derepressed in a weakly threshold-like manner upon increased target pool levels. In summary, we identify a network of confidently bound targets of miRNA regulation in ESCs and MSCs, reveal the extent of miRNA-independent binding in these two cell types, provide a list of potential miRNA enhancer RBPs, and create a quantitative context for evaluating target competition in miRNA networks.
by Andrew D. Bosson.
Ph. D.
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18

Janson, Charles Helmar. "Ecological and social consequences of food competition in brown capuchin monkeys /." Thesis, Connect to this title online; UW restricted, 1985. http://hdl.handle.net/1773/5173.

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19

Montano, Emil W. H. "Competition in a Simple Pond: A 3D Agent Based Model Approach." Digital Commons @ East Tennessee State University, 2013. https://dc.etsu.edu/honors/93.

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If two species are competing for a limited resource, the species that uses the resource more efficiently will eventually eliminate the other. This is known as the principle of competitive exclusion developed by Georgy Gause. To determine the effect of this competition, a simple three-dimensional model of a pond is created in which two species compete for a single source of energy (algae). The model is based solely on the conservation of the energy that flows through an ecosystem where primary production is the only source of energy. The first scenario tested is of two competing species with identical life histories; therefore it is predicted that one of the species will randomly become extinct. Another experiment demonstrates how the speed of extinction is dependent upon the energy input (external factors) of the environment. Results show a higher rate of life cycles and smaller fluctuation of population between life cycles in a higher energy input environment and slower but higher fluctuating life cycles in a low energy input environment. The introduction of a predator to the system shows that an additional level of hierarchy can have a short term stabilizing effect in populations of competing species with identical life histories. Predators cannot be too efficient due to the risk of prey depletion leading to predator extinction occurs. Stratification of the two competing populations was then added to further stabilize the populations causing coexistence within the simulation. Slight differences in life histories can create large differences in survival. The simulations include changing speed, size, and energy input. When referring to the different life histories model, one species with certain parameters competing with another species with different parameters may be more successful under a certain environmental condition and less successful under other conditions.
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20

Nguyen, Tung Shen Wenxian Hetzer Georg. "A-stability for two species competition diffusion systems." Auburn, Ala., 2006. http://repo.lib.auburn.edu/2006%20Summer/Dissertations/NGUYEN_TUNG_28.pdf.

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21

Vallin, Niclas. "Competition, Coexistence and Character Displacement : In a Young Avian Hybrid Zone." Doctoral thesis, Uppsala universitet, Zooekologi, 2011. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-157146.

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This thesis investigates the ecological and evolutionary implications of a recent secondary contact between two closely related bird species: collared (Ficedula albicollis) and pied (F. hypoleuca) flycatchers. Collared flycatchers started to colonize the Swedish island of Öland, where pied flycatchers were already present, in the late 1950s-early1960s. My major aims were to investigate which factors are acting against versus for long-term coexistence between the two species. Specifically, I investigated the relative importance of allopatric divergence, interspecific competition, hybridization and learning in promoting or inhibiting coexistence. The combined effects of interspecific competition and hybridization drives pied flycatchers towards local extinction in their preferred deciduous habitat. However, my results also show that pied flycatchers are better able to tolerate harsh environmental conditions. This trade-off between competitive ability and resilience in the face of harsh conditions facilitates a regional coexistence between the species. Coexistence is furthermore favoured by competition-mediated divergence in breeding habitat choice, timing of breeding and male breeding plumage colouration. Due to interspecific competition, male pied flycatchers are forced to breed in a more mixed forest type with a later peak in food abundance, which is accompanied by a divergence in breeding time between the two species. In areas shared with collared flycatchers, male pied flycatchers with brown plumage coloration, most divergent from that of collared flycatchers, are favoured by selection. In addition to facilitating coexistence, the observed shift in habitat occupancy increases reproductive isolation between the two species. By using cross-fostering experiments I demonstrate that natal habitat imprinting has the potential to additionally speed up habitat segregation. Finally I show that hybrid nestlings express an intermediate response to harsh environments, indicating that another aspect of ecological-based selection may be important in reproductive isolation between the species. In summary, my results show that adaptations during historic allopatry are important both in facilitating coexistence as well as in providing a foundation for further ecological divergence at secondary contact. This is of relevance today as many species are shifting their distributions in response to habitat disturbance and global warming.
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22

Snaith, Tamaini. "Group size and food competition in red colobus monkeys: addressing the folivore paradox." Thesis, McGill University, 2008. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=21943.

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Food competition is an expected cost of group living. It is therefore puzzling that there is little evidence for competition among group-living folivorous monkeys. Given the expected advantages of group living, it is even more puzzling that folivores do not form larger groups despite this apparent lack of food competition. This has become known as the folivore paradox, and to date there is no broadly accepted theoretical solution. However, there have been theoretical and methodological problems with previous studies, preventing clear interpretation of results. I synthesized existing theory and data and demonstrated that, when habitat conditions are appropriately accounted for, folivores do show signs of food competition. I provide a broadened list of behavioural indices of food competition, and suggest an expanded working model to better organize and understand primate socioecology. The notion that folivores experience little or no food competition is based in part on the assumption that their food resources are superabundant and evenly dispersed, and thus non-depletable. I examined the foraging behaviour of red colobus monkeys (Procolobus rufomitratus) in Kibale National Park, Uganda and found that intake rate slowed despite increasing feeding effort during patch occupancy. Furthermore, occupancy time was related to the size of the feeding group and to the size of the patch. These results suggest that red colobus depleted patches of preferred foods, and that larger groups deplete patches more quickly. Because food patches are depletable, red colobus likely experience increasing foraging costs in larger groups due to scramble competition. I conducted a multi-group, ecologically controlled study to determine whether red colobus display any predicted behavioural indicators of food competition. I simultaneously followed 9 groups of red colobus and controlled for spatial and temporal variation in food availability. I found that larger groups occupied larger home ran
La compétition pour la nourriture est considérée coûteuse pour les espèces vivant en groupe. Fait déconcertant; nous avons très peu d'évidences que la compétition affecte les espèces de singes folivores grégaires. Il est donc surprenant que les singes folivores ne forment pas de larges groupes en cette apparente absence de compétition pour les ressources alimentaires. Ces observations sont à la base du «paradoxe des folivores», et jusqu'à maintenant, aucune théorie ne fait l'unanimité. Plusieurs problèmes théoriques et méthodologiques ont été répertoriés dans les études précédentes, et ces problèmes peuvent être à la base de ce paradoxe via une interprétation biaisée des résultats. Suite a un travail de synthèse des théories et bases de données existantes, j'ai finalement démontré que lorsque les conditions de l'habitat sont incluses dans l'analyse, les singes folivores confirment des signes de compétition pour les ressources alimentaires. Dans cet ouvrage, je fourni une liste d'indices comportementaux qui examinent la compétition pour les ressources alimentaires et je suggère un nouveau modèle afin de mieux organiser notre compréhension de la socio-écologie des primates. La notion sur laquelle les espèces folivores sont sujettes à une faible ou une absence de compétition pour les ressources alimentaires réside en partie sur la supposition que leurs ressources sont inépuisables, c'est-à-dire surabondantes et également distribuées. J'ai examiné le comportement d'alimentation des singes Colobe rousse (Procolobus rufomitratus) dans le Parc National de Kibale, Ouganda. J'ai découvert que le taux d'alimentation diminue malgré une augmentation de l'effort durant la quête alimentaire pour une parcelle donnée. De plus, le temps d'occupation de la parcelle était relié à la taille des groupes d'alimentation ainsi qu'à la taille de la parcelle d'alimentation. Ces résultats suggèrent que les Colobe rousse épuis
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23

Tombak, Kaia. "The effects of low food competition on foraging and dominance in folivorous primates." Thesis, McGill University, 2011. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=104653.

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Several different socioecological models have been developed to better understand the social organisation of various primate taxa. This thesis addresses two points of divergence between empirically observed behaviour and that predicted by current models for folivorous (leaf-eating) primates. First, many folivores form small groups despite the assumed low food competition among folivorous primates that would theoretically eliminate a key constraint on group size. This phenomenon is termed the folivore paradox since the small groups that they form have fewer anti-predator and anti-infanticidal advantages than do large groups. Second, defined dominance hierarchies are not expected to occur among females in a group when food competition is low because a founding ecological model proposed that competition between female primates is based on food resources. However, most folivorous primate species have exhibited linear (strong) dominance hierarchies among females where this has been studied. Chapter 1 examines food patch depletion behaviour in black and white colobus monkeys and compares it to that of red colobus monkeys, which form much larger groups. Implications for food competition within groups of different sizes and for the folivore paradox are discussed. The second chapter is a study on female dominance hierarchies in a group of red colobus. The results are compared to those found for other folivorous primates to determine which traits or conditions may be driving inter-species variation in social structure. This thesis illustrates that the assumption of low food competition among folivorous primates commonly integrated into leading socioecological models may be applicable to only some primate species. Chapter 1 suggests that the level of food competition within groups varies markedly between folivore species. Chapter 2 demonstrates that, even in species that lack strong female dominance hierarchies (indicating low food competition), reproductive fitness can still be affected by an individual's dominance rank. This suggests a need to refine leading primate socioecological models to allow for more variety in ecological function and social structure among folivorous primate species.
Plusieurs modèles socioécologiques ont été développés pour mieux comprendre l'organisation sociale des primates de différentes espèces. Cette thèse traite de deux points de déviation entre le comportement empiriquement observé et celui prédit par les modèles courants pour les primates folivores (ceux qui se nourrissent de feuilles). Tout d'abord, plusieurs espèces folivores forment des petits groupes malgré leurs bas niveau de compétition alimentaire supposé, ce qui les libère théoriquement de former des grands groupes. Ce phénomène est nommé le paradoxe des folivores, car leurs petits groupes n'avaient pas les avantages des grands groupes contre les prédateurs et l'infanticide. Deuxièmement, il est supposé que les hiérarchies parmi les femelles ne se forment pas dans les groupes quand la compétition pour l'alimentation est basse parce qu'un modèle fondateur propose que la compétition entre les primates femelles est basée sur les ressources alimentaires. Toutefois, la plupart des primates folivores dont la dominance entre les femelles a été évaluée présentent des hiérarchies linéaires parmi les femelles.Dans le premier chapitre j'examine l'épuisement des ressources alimentaires chez les singes colobes noirs et blancs et je le compare à celui découvert chez les colobes rouges, qui forment des groupes beaucoup plus grands. Les implications pour la compétition alimentaire dans les groupes de grandeurs différentes et pour le paradoxe des folivores sont discutées. Le deuxième chapitre est une étude de la hiérarchie parmi les femelles dans un groupe des colobes rouges. Les résultats sont comparés à ceux des autres espèces de primates folivores pour déterminer quels traits ou conditions peuvent pousser la variation dans la structure sociale entre espèces.Les résultats de cette thèse montrent que la supposition d'un manque de compétition alimentaire dans les groupes des primates folivores, qui est communément intégrée aux modèles socioécologiques courants, est valable seulement pour certaines espèces de primates folivores. Le chapitre 1 démontre que la compétition alimentaire dans les groupes varie entre espèces, et le chapitre 2 démontre que même chez les espèces où il n'y a pas de hiérarchie parmi les femelles, leurs succès reproducteurs peuvent toujours être influencés par le niveau d'agression exprimé par ces individus. Ces résultats suggèrent qu'il y a un besoin de raffiner les modèles socioécologiques courants pour permettre la considération d'une variété dans la fonction écologique et dans la structure sociale chez les espèces de primates folivores.
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Masiko, Oyena B. "Are Cape Cormorants (Phalacrocorax capensis) losing the competition? Dietary overlap with commercial fisheries." Master's thesis, University of Cape Town, 2018. http://hdl.handle.net/11427/29731.

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Characterisation of the diet of pelagic feeders can be regarded as key to development of ecosystem-based management plans, conservation of predators as well as understanding of ecological and trophic interactions. Therefore, long term studies on dietary changes provide insights into the nature of competition and overlap between seabirds and fisheries. The Cape Cormorant Phalacrocorax capensis breeds in the Benguela upwelling region of southern Africa. Its population has decreased by over 50% in the three most recent generations resulting in the species being listed as Endangered in the IUCN Red Data List. Its decline has previously been postulated to result from reduced prey availability. In this thesis, I examined and reported on the spatio-temporal distribution of Cape cormorant diet obtained from different colonies over two decades (1988 – 1997 and 1998 – 2007). I further investigated the extent of overlap between the diet composition and sizes of fish eaten by Cape Cormorants and those caught by the purse-seine fishery. Epipelagic fish (Anchovy, Sardine, Horse Mackerel and Redeye) dominated the diet of Cape cormorants at all sites. Anchovy was the most important in the diet in all years except in 1992 and 1993, when Sardine dominated the diet, and in 2007 when ‘other’ fish species (mainly Cape Silverside Atherina breviceps and Southern Mullet Chelon richardsonii) became the most frequently eaten fish. There were decadal variations in the relative numerical abundance of different prey species. Over both decades investigated, the diet was largely dominated by Anchovy and Sardine, with Horse Mackerel contributing more in the second than first decade. There was, however, an increase in the contribution of Anchovy relative to Sardine from the first decade to the second. At all colonies, Cape Cormorants mostly preyed on Anchovies of sizes between 5 and 11cm. Sardines eaten were larger than Anchovies (mostly 11 – 23 cm), with a bimodal distribution in the first decade. However, the few Sardine eaten in the second decade were smaller (4 – 7 cm) perhaps reflecting the length of fish available. There was an overlap in the distribution of fish sizes caught by the fishery and those found in the diet of Cape Cormorants especially in the first decade. However, increased sampling of Cape Cormorant diet is required to more fully understand the extent of competition and overlap with fisheries.
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Dillon, Michelle Rene. "The effects of resource competition and dilution on sibling rivalry in rural Dominica." Pullman, Wash. : Washington State University, 2009. http://www.dissertations.wsu.edu/Thesis/Spring2009/m_dillon_042809.pdf.

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Thesis (M.A. in anthropology)--Washington State University, May 2009.
Title from PDF title page (viewed on June 8, 2009). "Department of Anthropology." Includes bibliographical references (p. 40-45).
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26

Schluter, Jonas. "Competition and cooperation in host-associated microbial communities : insights from computational and mathematical models." Thesis, University of Oxford, 2014. http://ora.ox.ac.uk/objects/uuid:f2c26005-0332-44cf-88bc-2f78548c1244.

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Our bodies contain a vast number and diversity of microbes. These microbes interact, and these interactions can define how microbes affect us. Microbial ecology and evolution, therefore, are important for both microbiology and human health. However, our understanding of microbial communities remains limited. There is a need for theory that dissects the complexity and identifies the key factors and processes affecting microbial groups. Here I develop realistic computer simulations and population models of microbial communities. My first project seeks to explain microbial communication (quorum sensing) and argues that quorum sensing is a way to infer when competing genotypes are no longer a threat. The second project proposes an evolutionary explanation for another major microbial trait: adhesion. I argue that adhesion is a weapon allowing cells to compete within microbial groups and push competitors out, particularly when growing on a host epithelium. The third project moves from microbes to the host and asks whether a host can control which microbes grow and persist inside it. I develop a model of the human gut epithelium and show that the gut architecture amplifies the ability of hosts to select helpful microbes over harmful ones using nutrient secretion. In addition to selecting particular microbial strains, a host will also benefit from stable symbiotic communities that behave in a predictable manner. But what determines whether host-associated communities are ecologically stable? My final project uses ecological network theory to show that ecological stability is likely to be a problem for gut communities that are diverse and contain species that cooperate with each other. However, I argue that the host should function as an ecosystem engineer that increases ecological stability by weakening the strong dependence of cooperating species upon one another. While host-associated communities are complex ecological systems, my thesis identifies key factors that affect their form and function.
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Kutzer, Bernhard W. "'Sustainability as a Design Tool' A Sustainable Biology and Chemistry Teaching Laboratory for Georgetown University in Washington D.C. 'Inform[ation]al Backbone'." Thesis, Virginia Tech, 2004. http://hdl.handle.net/10919/35088.

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Like much of the world, the United States is currently experiencing intense growth, especially in and around its cities. Unfortunately, this growth is often at odds with the natural environment. In order to reduce the demand of foreign energy resources designing with "green" or ecologically responsive design objectives in mind is vital. We may think of cars and factories as the most obvious enemies of the environment, but buildings consume half of the energy used world wide. The idea of this thesis project was to explore the possibilities of sustainable strategies.That is to develop an energy intensive building based on ecological principles as design tools that demonstrate the economic value of sustainability, and to highlight an energy intensive building type as an example of energy-responsive-living that actually 'looks good'.
Master of Architecture
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28

Hokanson, Kenton Curtis. "Synaptic Gain Control at a Visual Synapse| Gated by Competition and Constrained Homeostatically." Thesis, University of California, San Francisco, 2018. http://pqdtopen.proquest.com/#viewpdf?dispub=10689797.

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Visual information is relayed from retina to the brain at first order synapses within the lateral geniculate nucleus (dLGN). During development, activity-dependent synaptic competition drives the segregation of retinal ganglion cell terminals into eye-specific zones. It has been assumed that the gain of synaptic transmission within these eye-specific zones is equivalent, providing uniform information transfer from the periphery to the CNS. Here, we revise this understanding. First, we demonstrate that anatomical segregation of retinal axons triggers a profound (200–300%) potentiation of neurotransmitter release selectively within the projection zone of the ipsilateral eye. Second, optogenetic recruitment of genetically defined axons within the ipsilateral projection zone provides evidence that functional synaptic connectivity is sub-stratified within the ipsilateral dLGN. Thus, we define a new functional organization within the dLGN and propose that synaptic competition acts as a developmental timer that triggers respecification of set point synaptic gain within the ipsilateral dLGN.

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Shinohara, Aya. "Competition Among Juvenile Acropora on Shallow Reefs, Okinawa, Japan." NSUWorks, 2004. http://nsuworks.nova.edu/occ_stuetd/273.

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The processes structuring coral communities involve many factors including recruitment dynamics, competitive interactions, and acute and chronic disturbances. The shallow reef at Sunabe (Okinawa, Ryukyu Islands, Japan) was dominated by a dense cover of mainly Acropora spp. until the bleaching event in 1998, when most colonies died. Subsequent monitoring of the community showed that the number of juvenile colonies was high in 2000 and competition among these colonies may affect community dynamics. The aim of this study was to determine the possibility of predicting community change and recovery, using short-term observation data of size-specific mortality and growth rates of coral recruits. Predictions were made using a demographic model based on a Leslie-matrix approach with data collected on the shallow reefs of Sunabe in 2000. This existing data showed a tendency of high mortality of competing colonies, but with no significant difference among species. Over the period of 2000-2004 percent cover of Acropora sp. increased from 16% to 22% however the number of colonies decreased (from 6.5 per quadrat to 2.5 per quadrat). The prediction of size fraction derived from the matrix population model and the observed size fraction based on the 2004 data showed some agreement; however the model predicted a high number of colonies in the largest size class. There were no adult colonies in 2000. A known bleaching event in 2002, causing mortality of reproducing adult colonies (high mortality and low growth rates) is most probably the reason for the disagreement between is the matrix model-based prediction and the observed community structure. Therefore, it is suggested that one more size class is add to the model, representing reproducing colonies. It is also suggested that further improvement of the model is needed for disturbances (such as bleaching, typhoon, and mass predation events). Despite these suggested improvements, the model presented here shows that it is possible to use simple community data taken over the course of 1 year to predict short-term community size class dynamics and population growth on juvenile Acropora spp. dominated reefs. Thus, such investigations have practical value for the management of coral resources.
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Sommers, Pacifica. "Interacting effects of predation and competition in the field and in theory." Thesis, The University of Arizona, 2016. http://pqdtopen.proquest.com/#viewpdf?dispub=10007216.

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The principle of competitive exclusion holds that the strongest competitor for a single resource can exclude other species. Yet in many systems, more similar species appear to stably coexist than the small number of limiting resources. Understanding how and when similar species can stably coexist has taken on new urgency in managing biological invasions and their ecological impacts. Recent theoretical advances emphasize the importance of predators in determining coexistence. The effects of predators, however, can be mediated by behavioral changes induced in their prey as well as by their lethality. In this dissertation, I ask how considering multiple trophic levels changes our understanding of how a grass invasion (Pennisetum ciliare) affects species diversity and dynamics in southeastern Arizona. In considering interactions with plant consumers, and with the predators of those consumers, this research reveals more general ecological processes that determine species diversity across biological communities. I first present evidence from a grass removal experiment in the field that shows increased emergence and short-term survival of native perennial plants without grass. This is consistent with Pennisetum ciliare causing the observed concurrent decline in native plant abundance following invasion. I then present results from greenhouse and field studies consistent with that suppression of native plants being driven primarily through resource competition rather than increased rodent granivory. Granivorous rodents do not solely function as consumers, however, because they cache their harvested seeds in shallow scatter-hoards, from which seeds can germinate. Rodents thus act also as seed dispersers in a context-dependent mutualism. They primary granivores in areas invaded by Pennisetum ciliare are pocket mice (genus Chaetodipus), which have a well-studied tendency to concentrate their activity under plant cover to avoid predation by owls. Because the dense canopy of the grass may provide safer refuge, I hypothesized the pocket mice may be directly dispersing native seeds closer to the base of the invasive grass. Such a behavior could increase the competitive effect of the grass on native plant species, further driving the impacts of the invasion. By offering experimental seeds dusted in fluorescent powder and tracking where the seeds were cached, I show that rodents do preferentially cache experimental seeds under the grass. This dispersal interaction may be more general to plant interactions with seed-caching rodents across semi-arid regions that are experiencing plant invasions. Finally, I ask how the predator avoidance behavior exhibited by these rodents affects their ability to coexist with one another. Not only could their diversity affect that of the plant community, but the effects of plant invasions can cascade through other trophic levels. Theoretical understanding of how similar predator avoidance strategy alters coexistence had not yet been developed, however. Instead of a field study, therefore, I modified a general consumer-resource model with three trophic levels to ask whether avoidance behavior by the middle trophic level alters the ability of those species to coexist. I found that more effective avoidance behavior, or greater safety for less cost, increased the importance of resource partitioning in determining overall niche overlap. Lowering niche overlap between two species promotes their coexistence in the sense that their average fitness can be more different and still permit coexistence. These results provide novel understanding of behavioral modifications to population dynamics in multi-trophic coexistence theory applicable to this invasion and more broadly.

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31

Pillay, Pradeep. "The ecological and evolutionary assembly of competitive communities in dynamic landscapes /." Thesis, McGill University, 2006. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=101164.

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We use metapopulation models based on a classic competition-colonization trade-off in order to (1) study community responses to spatially structured habitat loss on dynamic landscapes when species are assembled by ecological (biogeographic) processes; and (2) to study how species are assembled into communities by evolutionary mechanisms. In the first part of our study we show how the response of species richness to habitat destruction in dynamic landscapes can be driven by the existence of either the spatial structure of habitat dynamics or by life-history trade-offs among species. In the second part of our study we confirm that competitive trade-off models predict runaway evolution towards stochastic extinction, making it impossible for stable multispecies assemblages to evolve. We demonstrate that by relaxing the strict deterministic nature of competitive exclusion in such models species can avoid selection towards extinction, allowing for the possibility of species co-evolution resulting in stable multispecies assemblages.
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Twolan-Strutt, Lisa. "Competition intensity and its above- and below-ground components in two contrasting wetland plant communities." Thesis, University of Ottawa (Canada), 1994. http://hdl.handle.net/10393/9921.

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I used a field experiment to measure total competition intensity and its above- and below-ground components in two wetlands that represent extremes in habitat productivity: an infertile sandy shoreline and a fertile bay. Transplants of Lythrum salicaria and Carex crinita were grown with no neighbours, with roots of neighbours only and with all neighbours; their growth rates were used to estimate competition intensity. The experiment was carried out to answer the following main questions: (1) Is there a difference in total, above- and below-ground competition intensity in two wetlands that differ in standing crop? (2) Is there an effect of standing crop on total, above- and below-ground competition intensity when the data from the two wetlands are combined? Both total and above-ground competition intensity were found to be greater in the high standing crop wetland but below-ground competition did not differ between wetlands (CI$\rm\sb{TOTAL}$: p 0.00001, CI$\rm\sb{ABOVE}$: p = 0.0013 CI$\rm\sb{BELOW}$: p = 0.58). Mean total competition increased from 0.16 to 0.43, the above-ground component increased from $-$0.063 to 0.21 and the below-ground component was close to 0.20 in both wetlands. Total and above-ground competition intensity was significantly affected by standing crop in the wetlands studied but below-ground competition intensity was not (CI$\rm\sb{TOTAL}$: p = 0.0001, CI$\rm\sb{ABOVE}$: p = 0.0001, CI$\rm\sb{BELOW}$: p =0.89). The result that competition was predominantly below-ground in the low standing crop wetland supports previous work in agricultural pot experiments (Wilson 1988) and terrestrial field studies (Wilson and Tilman 1991, Putz and Canham 1992, Wilson and Tilman 1993, Wilson in press). The result that root and shoot competition were roughly equal in the high standing crop wetland is not typical of past studies. (Abstract shortened by UMI.)
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Cinco-Castro, Ramon-Antonio 1958. "Purple nutsedge (Cyperus rotundus L.) competition with cotton: Species biology and effects of proportion, density, and moisture." Diss., The University of Arizona, 1999. http://hdl.handle.net/10150/282868.

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Greenhouse and field experiments were conducted to determine how proximity factors and water stress interact to influence competition between purple nutsedge and upland cotton. Purple nutsedge produced more total dry weight than cotton in wet conditions but produced less or similar total dry weight in dry conditions. Cotton's ability to extract water from greater soil depth and maintain a high rate of photosynthesis during water stress enabled it to maintain higher RGR (relative growth rate), LAR (leaf area ratio), and leaf expansion than nutsedge. Absolute growth rate (AGR), initial propagule weight, and early shoot production were important parameters for purple nutsedge competition with cotton. Moisture stress affected the relative importance of intraspecific and interspecific competition between species in both greenhouse and field experiments. intraspecific competition was more important than interspecific competition in determining cotton biomass production in wet conditions but drier conditions further reduced the relative importance of interspecific competition. The results of all experiments indicate that greenhouse addition series competition experiments can be applicable to field conditions provided the experimental design takes into account the biological characteristics of the species being studied. Pot size had a large influence on intra- and interspecific competition between purple nutsedge and cotton. In greenhouse experiments, physiological measurements were initiated one hour after irrigation and repeated every 2 h throughout the day. One hour after the cessation of water stress, the photosynthetic rates of both species increased, but photosynthesis recovered faster in cotton than in purple nutsedge. The faster recovery of photosynthesis in cotton was probably due to the osmotic adjustment that occurred in cotton leaves that protected enzymes and other cellular components during water stress. In additive field experiments, seed cotton yield was reduced because the number of harvestable bolls m⁻¹ was reduced as purple nutsedge density increased. Yield was also reduced by cotton seedling death at the highest nutsedge density. The interference of purple nutsedge with cotton cannot be reduced through water management alone. But, based on the growth characteristics of indeterminate cotton varieties, we suggest that delaying the first post-planting irrigation of some cotton varieties could reduce the competition of purple nutsedge with cotton without affecting final seed cotton yield.
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Person, Bridgette D. "An analysis of competition between gag-dependent transcripts and HIV-1 Rev protein in transient transfection assays." DigitalCommons@Robert W. Woodruff Library, Atlanta University Center, 2000. http://digitalcommons.auctr.edu/dissertations/2498.

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Retroviruses express their repertoire of products from a single primary transcript. However, it appears that the default condition for posttranscriptional processing in a normal cell is to completely splice any intron-containing transcripts. Consequently, the dilemma for the retroviruses is how to export the full length, unspliced and partially spliced transcript which both code for structural proteins, as well as serves as the genome to be packaged into mature virus particles. Many retroviruses (HIV-1, HTLV-l, EIAV, visna) exploit posttranscriptional mechanisms, by which their intron-containing mRNAs circumvent nuclear retention, and are exported to the cytoplasm. For example, HIV-1 RNAs contain at least one functional intron that must enter the cytoplasm to act as templates for the synthesis of proteins. HIV-l regulates expression of its genome through the interaction of a virally encoded trans-acting factor, Rev, with a cis-acting Rev responsive element (RRE). Rev binds unspliced and singly spliced nuclear transcripts containing the RE and shuttles them into the cytoplasm. Other retroviruses (MPMV, SRV) lack Rev-like trans-acting viral proteins. Their transcripts contain a cis-acting element, termed the constitutive transport element (CTE), that allows transport of intron-containing mRNAs. CTE-like elements have also been identified in DNA viruses (Hepatitis B, HSV~1). Retroviral CTEs have been shown to be able to substitute for the Rev/RRE system to allow efficient regulatory control of HIV expression. Although a number of studies have examined what cellular cofactors are involved in Rev/RRE and CTE-mediated transport, it is not clear if common cellular cofactor(s) exist. In these studies we have used a transfection/competition assay to investigate whether Rev/RRE-, SRVCTE~, and MPMVCTE-containing transcripts utilize similar cofactors for nucleocytoplasmic transport. Coexpression of gagMPMVCTE and pCwtRev at various concentrations in the same cell demonstrated that Rev inhibited CTE- mediated transport from the nucleus. Using the same assay we further demonstrated that GTE-mediated export was not inhibited by cotransfection with a pCΔRev(-) mutant clone, a Rev point mutant clone, or luciferase, a non-specific marker protein. Our data suggest that this inhibition is specific for Rev, and for a specific region of the Rev protein. We propose that Rev and the CTEs interact with a common cellular cofactor(s), or that Rev directly interacts with the CTEs.
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35

Guang, August. "Switching Between Cooperation and Competition in Social Selection." Scholarship @ Claremont, 2012. https://scholarship.claremont.edu/hmc_theses/40.

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Roughgarden et al. (2006) proposed a theory called social selection as a behavioral game theoretic model for sexual reproduction that incorporates both competition and cooperation in 2006. Players oscillate between playing competitively to maximize their individual fitness, leading to a Nash Competitive Equilibrium, and playing cooperatively to maximize a team fitness function, leading to a Nash Bargaining Solution. Roughgarden et al. (2006) gives rates of change for both the competitive state and the cooperative state, but does not explain her rates or how to switch between the states in sufficient detail. We test and rederive the rates, critiquing an assumption that the derivation of such a rate must make, as well as create a probabilistic model that switches between the two states. We test our model on the reproductive behaviors of Symphodus tinca, the peacock wrasse. The results follow the trajectory of the reproductive strategies for the wrasse throughout the breeding system, suggesting that cooperation could be a mechanism through which wrasse change their reproductive behaviors. However, the inputs to the model need to be analyzed more critically. Future work could include deriving rates for competitive play and cooperative play that do not rely on assumptions of being able to quantify strategy allocation proportion and refining the model and drawing generalized conclusions about it.
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Sage, Rebecca Michelle Sorensen. "Acoustic sexual communication in the house cricket (Acheta domesticus): Effects of female choice and intermale competition on male calling song." Diss., The University of Arizona, 1998. http://hdl.handle.net/10150/282624.

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This dissertation reports on a study conducted to examine the morphological, behavioral, and environmental sources of variation in the structure of house cricket, Acheta domesticus, calling song. Song variations may be important in female mating decisions and influence male mating success. Eleven song parameters were measured: chirp duration, interchirp duration, syllable number, syllable duration, intersyllable duration, mean frequency, frequency intensity, minimum frequency, maximum frequency, syllable intensity, and intensity difference between syllable and frequency intensity. Morphological factors examined included body: mass, length, color, asymmetry, intactness; and male age. Behavioral factors were timing of song bouts and proclivity to sing. Environmental conditions of high population densities were simulated by temporarily placing males into an arena with three other males. The calling song structure of tactilely isolated males resulted in three factors: frequency (mean, minimum, and maximum frequencies); intensity (syllable intensity, and intensity difference); and variability (difference between syllable intensity and frequency intensity). Males with high body intactness sang at lower frequencies. Asymmetrical males sang more intense songs. Large males sang with more intensity and frequency variability. Intermale competitions resulted in distinguishable linear dominance hierarchies. Lower-ranking males sang less often than higher-ranking males, altered singing times, and sang quieter songs. Intermale competition resulted in males altering song structure. Analysis of post-competitive songs resulted in three factors: frequency (mean and maximum frequencies, and intensity difference); energy (duty-cycle, intensity, and minimum frequency) and variability (unchanged). Higher-ranking asymmetrical males sang at lower frequencies. Higher-ranking males sang with greater energy, and timed their singing to female receptive times. Higher-ranking, large, intact males sang with less variability. This study indicated that A. domesticus males signal phenotypic information via their calling song characteristics. More specifically, in low population densities males signal information concerning their fitness-related qualities. After having established dominance orders, the male signal information concerning their rank in conjunction with fitness. The implications of this study were that intermale competition altered the song cues available to the females and may alter female mating decisions.
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Wilson, Scott D. "Interspecific competition and species distributions along an environmental gradient field experiments in a lakeshore plant community." Thesis, University of Ottawa (Canada), 1986. http://hdl.handle.net/10393/5067.

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Keogh, Teri M. "Changes in competition intensity, herbivory and stress along a soil depth gradient in an old field." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 2000. http://www.collectionscanada.ca/obj/s4/f2/dsk1/tape2/PQDD_0021/MQ58467.pdf.

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Bellgraph, Brian Joseph. "Competition potential between sauger and walleye in non-native sympatry historical trends and resource overlap in the middle Missouri River, Montana /." Thesis, Montana State University, 2006. http://etd.lib.montana.edu/etd/2006/bellgraph/BellgraphB0506.pdf.

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Thesis (M.S.)--Montana State University--Bozeman, 2006.
Title from PDF t.p. (viewed on Mar. 30, 2008). Chairperson, Graduate Committee: Christopher S. Guy. Includes bibliographical references (p. 65-72).
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40

Murphy, Ryan John. "Mechanochemical and experimental models in mathematical biology." Thesis, Queensland University of Technology, 2022. https://eprints.qut.edu.au/228428/1/Ryan%20John_Murphy_Thesis.pdf.

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Experiments that probe epithelial tissue dynamics, cell competition, and tumour growth are fundamental to understand processes in developmental biology, cancer progression and treatment. However, interpreting complex biological experiments is challenging. To address this challenge, we develop and use a range of mathematical models. First, we focus on epithelial tissue dynamics. Second, we use real-time cell cycle imaging to reveal the structure of growing tumour spheroids. We then revisit the seminal Greenspan tumour growth model and use statistical analysis to quantitatively connect it to experimental data for the first time to reveal experimental design choices that lead to reliable biological insight.
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Hanson, John Mark 1955. "Patterns of animal abundance in lakes : the role of competition in the fish-macroinvertebrate relationship." Thesis, McGill University, 1985. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=71975.

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Data taken from the literature were used to develop and evaluate models predicting fish biomass and yield, crustacean zooplankton biomass, and profundal macrobenthos biomass in lakes. Total phosphorus concentration and macrobenthos biomass/mean depth were the best univariate predictors of fish biomass and yield. Phosphorus concentration was also the best predictor of zooplankton and macrobenthos biomass. In experiments testing for inter- and intraspecific competition, conducted in situ at densities based on measured natural fish densities, growth of yellow perch (Perca flavescens) and pumpkinseed (Lepomis gibbosus) reared alone was inversely related to density. Both species primarily ate macroinvertebrates when reared alone. When reared together: perch growth was significantly depressed compared to that of perch reared alone; pumpkinseed growth was equivalent to that of pumpkinseed reared alone; and the diet of perch changed to include food of inferior quality (microcrustaceans) in the presence of the superior competitor, pumpkinseed, whose diet did not change.
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Jenkins, Miriam M. "Density Effects on Competition for Pollination between Two Wetland Plants." University of Akron / OhioLINK, 2014. http://rave.ohiolink.edu/etdc/view?acc_num=akron1405376639.

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43

Stokes, Keith. "Associational Resistance and Competition in the Asphondylia - Borrichia - Iva System." Scholar Commons, 2013. http://scholarcommons.usf.edu/etd/4948.

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Indirect ecological effects such as associational resistance and resource competition have the potential to affect ecological interactions and influence the structure of ecological communities. Although resource competition is commonly studied, the effects of associational resistance are not as evident if studies are not designed to detect them. Additionally, the relative strengths of different ecological mechanisms ought to be measured in studies, rather than the strength of singular mechanisms. This permits proper attribution of causes and effects in community structure and detection of higher order interactions in a way that naïve reductionism will not. In a series of experiments, I looked at the effects of large-scale addition and removal of Borrichia frutescens on associational resistance of Iva frutescens to the gallformer Asphondylia borrichiae in order to test the mechanism and strength of associational resistance in the system. Additionally, I measured the effects of relative host abundance and interpatch distance of hosts on associational resistance. Finally, I looked at the effect of the presence of stemborers competing with the gall former for host plant resources on parasitism rate and parasitoid guild composition. I found evidence for a strong effect of associational resistance by natural enemies over short distances, although the phenomenon is likely of minor importance in comparison to other factors known to affect gall former population density, such as environmental effects and host plant genotype. Competitors also had a weak effect, reducing mean gall diameter, but not significantly altering total parasitism rate. However, the presence of stemborer competitors did slightly alter the composition of the parasitoid guild. In sum, both associational resistance and competition from stemborers have detectable effects on A. borrichiae, albeit weak ones. Environmental factors, such as soil nitrogen content, are likely much stronger determinants of gall former population size.
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Gonzales, Emily Kristianne. "The effects of herbivory, competition, and disturbance on island meadows." Thesis, University of British Columbia, 2008. http://hdl.handle.net/2429/305.

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It is an unresolved paradox that non-native species are successful in novel environments whereas native species, presumably adapted to that environment, decline. This knowledge gap has persisted because third party processes in invasion ecology have been overlooked. Ungulate densities are increasing due to the eradication of predators and landscape change and I asked how herbivory and invasion might interact to cause declines of native species. In Garry oak meadows, Canada’s most endangered ecosystem, native forbs have declined relative to non-native grasses and I tested the facilitatory role of herbivory in that degradation. My investigations, novel to the field, were conducted on islands spanning the Canada-US border. Islands served as natural experimental units in a mensurative study of abundance patterns in seven plant groups and 15 focal species along gradients of herbivory, biogeography, soil depth, and human activities. Increasing ungulate densities were related to declines in abundances of native forbs, and increasing abundances of non-native annual grasses. These regional patterns were upheld by two plot-based, 2x2 factorial experiments that contrasted the fitness of native species under manipulations of herbivory and competition for light. Specifically, I showed that ungulates limited the establishment, growth, survival and reproduction of seedlings and transplanted native forbs and shrubs and that competition from non-native species had little effect. I also calculated forage selectivity indices and tested the efficacy of fencing and cutting to reduce competition, for the restoration of native community biomass. Non-native annual grasses were rarely browsed and increased with increasing ungulate density. Non-native perennial grasses declined with herbivory, however, their regional abundances were unaffected by ungulate density despite being preferentially foraged. That non-native annual and perennial grasses differed in their responses to herbivory has consequences for restoration and illustrates the challenge of developing a comprehensive theory of invasion. Reducing ungulates, necessary for the recovery of native forbs, also benefits non-native perennial grasses and therefore their removal speed recovery of Garry oak meadows. Despite advances in invasion ecology, scientists and managers are disconnected and research is rarely implemented. I conclude by proposing seven solutions to facilitate the integration of science into management.
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Hyder, Jennifer A. "An Investigation of the Effects of Increased Tidal Inundation, Competition, and Facilitation on Salt Marsh Systems." Thesis, University of South Florida, 2015. http://pqdtopen.proquest.com/#viewpdf?dispub=3700275.

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The low-lying topographic nature of salt marshes makes plants in these communities particularly vulnerable to increased salinity and inundation exposure associated with sea level rise. Both increased salinity and inundation have been cited as major causes of reduced plant performance and survival in marsh and areas fringing marsh. In addition to limitations imposed by physical stress, interspecific interactions have also been shown to mediate the performance and survival of salt marsh and salt marsh fringing species. The Stress Gradient Hypothesis (SGH) postulates that species interactions shift from competitive to facilitative as stress levels increase and predicts that (a) the frequency and intensity of facilitative interactions increase as conditions become more stressful for plants and (b) the strength of competitive interactions increases as abiotic stress levels diminish. The SGH has been rigorously tested to examine how both the frequency and intensity of species interactions change under varying physical stress levels. Studies conducted in salt marsh systems have shown facilitation to be as strong of a driving force as competition in influencing plant performance and survival and have shown that while competition appears to be the pervasive force in the less physically stressful terrestrial zones fringing salt marshes, facilitation influences the performance and survival of species in harsher marsh areas. Under conditions of sea level rise, it remains unclear if the nature of interspecific interactions would shift as stress levels change. This research endeavors to examine the interplay between abiotic stresses and biotic interactions under conditions of increased salinity and inundation exposure.

The first study presented here investigated the effects of increased inundation and soil salinity associated with sea level rise on four salt marsh fringing species, and assesses how competition and facilitation impact survival of salt marsh fringing plant survival under these changing conditions. All plant species experienced reduced growth and photosynthetic inhibition below their current distributional positions, both in the presence and absence of neighboring above ground vegetation. The findings also signal a potential shift in the nature of interspecific interactions from competition to facilitation to neutral as plants begin to experience increased salt and inundation exposure.

The second study aimed to disentangle the effects of increased soil salinity and increased soil moisture on four salt marsh fringing species, and to examine the effects of plant neighbors. The results showed that fringe plants exposed to increased inundation experienced a two-fold reduction in performance and survival over 750 g pure salt addition, suggesting that inundation may be a more important limiting factor than salinity with rising sea levels. Landward transplants at the forest-fringe margin exposed to lower soil salinity and decreased inundation exhibited a three-fold increase in performance and survival when compared to controls. Neighbor manipulation studies, which consisted of trimming neighboring vegetation to ground level, again suggested that interspecific interactions in salt marsh fringing species may shift from competitive to facilitative with climate-induced sea level rise. Overall, our findings suggest that salt marsh fringing species may not be able to tolerate changing conditions associated with sea level rise and their survival may hinge on their ability to migrate towards higher elevations.

The final experiment tested the Stress Gradient Hypothesis and investigated the relative importance of facilitation and competition in a salt marsh system under varying stress levels. This study also ascertained whether salt or inundation exposure is the primary influence on salt marsh plant performance and survival. As in previous studies, our findings suggest that many salt marsh plants don't require, but merely tolerate harsher abiotic conditions. The results showed that plants at higher elevations were depressed by strong competitive pressure from neighboring fringe species while plants at lower elevations benefited from the presence of neighbors. Collectively, the results of these studies indicate that species interactions are an integral driver of plant distribution in salt marsh communities. Furthermore, our findings indicate that changing stress levels may not always result in a shift in the nature of interspecific interactions. These studies have endeavored to show that the interplay between competition and facilitation interacts with physical processes to determine the growth and performance of both fringe and marsh plant species. The paucity of studies examining the roles of species interactions and changing abiotic stress levels on multiple salt marsh and salt marsh fringing species warrants the need for additional research. The responses of salt marsh and salt marsh fringing species to sea level rise can not only serve as very valuable and sensitive indictors of climate change, but will also aid in predicting the future location of the marsh-fringe-forest ecotone, which is predicted to shift inland as sea levels continue to rise.

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Mutton, Thomas Y. "Evolutionary biology of the Australian carnivorous marsupial genus Antechinus." Thesis, Queensland University of Technology, 2017. https://eprints.qut.edu.au/104321/6/Thomas_Mutton_Thesis.pdf.

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Antechinus is an Australian genus of small carnivorous marsupials. Since 2012, the number of described species in the genus has increased by 50% from ten to fifteen. The systematic relationships of these new species and others in the genus have not been well resolved and a broad phylogeographic study of the genus is lacking. Moreover, little ecological information is known about these new species. Therefore, the present thesis examined the evolutionary biology of Antechinus in two complimentary components. The first component aimed to resolve the systematics and phylogeography of the genus Antechinus. The second component, at a finer spatiotemporal scale, aimed to improve understanding of the autecology, habitat use and risk of extinction within the group, with a focus on the recently named buff-footed antechinus, A. mysticus and a partially sympatric congener, A. subtropicus.
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MacDonald, G. Blake. "Comparative responses of black spruce and jack pine seedlings to interspecific competition." Thesis, University of British Columbia, 1990. http://hdl.handle.net/2429/30617.

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Competition from non-crop vegetation decreases the productivity of conifer plantations across Canada. The objectives of this research were: (1) to develop reliable indices of perennial, interspecific competition; (2) to compare the responses of black spruce and jack pine seedlings to tree and brush competition in northern Ontario; and (3) to identify the silvicultural implications of the responses. An examination of potential components of a competition index considered measures based on hemispherical photographs, fractal geometry, stand maps, and mensurational data from 360 seedling-centred plots for each of the two crop species. Reliable competition indices should be simple formulations which include horizontal and vertical dimensions and which express the amount of competition relative to the size of the seedling. The optimum index was found to be the area of competing canopy on hemispherical photographs, relative to the seedling leaf area. An alternate index, requiring no elaborate equipment, was the sum of the competing stem volumes (relative to the seedling stem volume) of the largest competitor in each quadrant surrounding the seedling. Comparisons of crop tree responses were made using functional growth analysis, replacing the conventional time axis with a competition axis. The relationship between growth and competition was adequately modelled with a power exponential composite function. Jack pine and bare root stock of both species maintained superior growth despite greater sensitivities to competition, compared to black spruce and container stock, respectively. Thus, jack pine or bare root stock of black spruce would outperform the alternatives if tending were delayed, but competition should be removed in all cases to capture the maximum growth potential. The rate of growth decline in response to competition was consistently greatest at the lowest competition levels, indicating that no beneficial effect on growth was provided by a light cover of non-crop vegetation. Allometric analyses indicated that black spruce had a greater morphological plasticity than jack pine. At high competition levels black spruce allocated more biomass to branches and foliage, at the expense of stem and roots. Jack pine demonstrated no such adjustment in allocation pattern, but followed a strategy of stress avoidance through sustained high growth rates.
Forestry, Faculty of
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Petrie, Mark Joseph. "The role of interspecific competition in the decline of the black duck /." free to MU campus, to others for purchase, 1998. http://wwwlib.umi.com/cr/mo/fullcit?p9974709.

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49

Widemo, Maria. "Mutual Mate Choice in the Deep Snouted Pipefish Syngnathus typhle." Doctoral thesis, Uppsala universitet, Zooekologi, 2003. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-3303.

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This thesis integrates the fields of sexual selection, parental investment and sex role theory by investigating mutual mate choice and mate competition in the sex role reversed deep snouted pipefish Syngnathus typhle (Pisces: Syngnathidae) through a series of laboratory experiments. In S. typhle, the female transfers her eggs to the male's brood pouch where they are nourished and oxygenated for about a month, when the male gives birth to the independent fry. Mate choice was found to be adaptive. Both sexes benefited from mating with preferred partners in terms of increased offspring viability and got larger, or faster growing, offspring when mating with large fish. Females were also shown to prefer males with thicker brood pouches. Thus, females, the more competitive sex, had multiple preferences. Both male and female choice behaviour was found to be flexible and influenced by available information on partner quality. In addition, males, but not females, copied the mate choice of consexuals. Both sexes were found to take their own quality in relation to surrounding competitors into account when deciding whether to display to potential partners. Male-male competition was found to influence both the mate choice of males and, potentially, overrule the mate choice of females. Males did not compete as intensely as females, nor did they use their sexual ornament in this context as females do. Rather, the ornament was used in interactions with females, and males that displayed more received more eggs. The findings in this thesis emphasise the importance of not viewing mate choice and competition as opposite behaviours, but rather to apply a dynamic approach in mate choice studies, integrating choice and competition in both sex
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Frame, George Walter. "Carnivore Competition and Resource use in the Serengeti Ecosystem of Tanzania." DigitalCommons@USU, 1986. https://digitalcommons.usu.edu/etd/2206.

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Coexisting ungulate-eating carnivores--lion, spotted hyena, cheetah, leopard, African wild dog, black-backed jackal, common jackal, and six species of vulture--are examined in East Africa's Serengeti ecosystem. Niche similarities year-round, by season, and by location are described using food, habitat, time of hunting, and other variables. Intraspecific niches of cheetah sex, age, and social groups show that male coalitions differ most from the others in hunting behavior and habitat use. Tests using the carnivore data failed to support hypotheses about niche breadth variation, niche overlap variation, range of food items, and niche inclusion. Densities of the five largest Carnivora in the 35,500 square kilometer ecosystem are 0.513/sq km; including the two jackals gives a density of 1.55/sq km. Their prey--30 ungulate species--are 84 .85/sq km. Prey and predator ratios suggest that the Serengeti Plains in 1977 had a three-fourthsdecrease in relative abundance of prey to predators from wet season to dry season . Year-round the Ngorongoro Crater had a prey:predator ratio s lightly larger than that of the dry season Serengeti Plains. Literature review suggests that cleptoparasitism and direct killing are very important forms of interference competition among and within carnivore species . Evidence for exploitation competition i s scant, but is inferred because local environments are unpredictable f or carnivores. Analysis of body sizes fails to support the hypothesized ratios of 2.0 for body weigh t and 1.28 for linear dimensions . Three methods of calculating multidimensional niche metrics (product, summation, and projection) are compared. Apparently the Serengeti's carnivores coexist because of their behavioral flexibility in an unpredictable environment . Niche descriptions were of little he l p in assessing the foci for potential and real competition among carnivores . Only the direct observations of interference competition in long-term field studies identified where competitive interactions are occurring with sufficient intensity to provide a numerical response in a population. Spotted hyenas some times competitively exclude African wild dogs locally . Management f or a high abundance and diversity of carnivores probably requires maintaining high densities of prey and varied habitats. Specific recommendations are made for cheetah and African wild dog conservation.
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