Dissertations / Theses on the topic 'Chickens'

Hematocrit and hematocrit regulation have the potential to affect developing embryos. To examine the ability of chicken embryos at day 15 to regulate hematocrit, they were subjected to either repeated saline injections (5% of total blood volume) or repeated blood removal (5% of total blood volume). Embryos showed an ability to maintain hematocrit (~20%) despite blood volume increases up to 115% of initial blood volume. Embryos were not able to maintain hematocrit in the face of dramatic blood volume loss. Oxygen consumption of embryos could be affected by their level of hematocrit. To examine this, chicken embryos at day 15, 16, and 17 of incubation were given a high hematocrit (~50-60%) sample of blood (400 μl) to artificially increase the hematocrit of the embryos (~10-12%). Despite the increase in oxygen availability, when monitored over a period of six hours, embryos showed no difference (0.36 ± 0.01 (ml O2 - min-1- egg-1) in metabolism from baseline measurements at day 15, 16 and 17.

Thesis (MSc. Agriculture (Animal Production)) -- University of Limpopo, 2014
Two experiments were conducted to determine the effect of moringa seed meal supplementation on productivity and carcass characteristics of Ross 308 broiler chickens. The first experiment determined the effect of moringa seed meal supplementation on productivity of Ross 308 broiler chickens aged one to 21 days. Two hundred and fifty unsexed day-old Ross 308 broiler chicks were randomly allocated to five dietary treatments, replicated five times, and each replication having 10 chickens. A completely randomized design was used. The chickens were fed on a grower diet supplemented with 0 (M0), 5 (M5), 10 (M10), 15 (M15) and 20 (M20) g of moringa seed meal/bird/day. Moringa seed meal supplementation had no effect (P>0.05) on feed intake, metabolisable energy intake, nitrogen retention, feed conversion ratio and live weight of unsexed Ross 308 broiler chickens. Moringa seed meal supplementation improved (P<0.05) growth rates of unsexed Ross 308 broiler chickens aged one to 21 days. A moringa seed meal supplementation level of 13.3 g/kg DM feed optimized growth rate of Ross 308 broiler chickens aged one to 21 days. The second experiment determined the effect of moringa seed meal supplementation on productivity and carcass characteristics of female Ross 308 broiler chickens aged 22 to 42 days. The chickens weighing 558 ± 10 g/bird were randomly allocated to five treatments with five replications having 10 birds. The chickens, aged 21 days, were allocated to the treatments in a completely randomized design. The chickens were fed on a grower diet supplemented with 0 (FM0), 5 (FM5), 10 (FM10), 15 (FM15) and 20 (FM20) g of moringa seed meal per kg DM. Moringa seed meal supplementation had no effect (P>0.05) on feed intake, growth rate, feed conversion ratio, live weight, metabolisable energy intake, carcass weight, breast meat weight, abdominal fat pad weight, liver weight, heart weight, thigh weight, meat flavour, juiciness and tenderness of female Ross 308 broiler chickens. However, moringa seed meal supplementation improved (P<0.05) nitrogen retention and gizzard weights of female Ross 308 broiler chickens. vi It was concluded that moringa seed meal supplementation improved growth rate of unsexed Ross 308 broiler chickens aged one to 21 days. Similarly, moringa seed meal supplementation increased nitrogen retention and gizzard weights of female Ross 308 broiler chickens aged 22 to 42 days.

Thesis (M.Sc. (Animal Production)) -- University of Limpopo, 2014
Two experiments were conducted to determine the effects of supplementing diets with effective microorganisms on intake, growth and carcass characteristics of Ross 308 broiler chickens. The first experiment determined the effect of supplementing diets with effective microorganisms on performance of unsexed Ross 308 broiler chickens aged one to three weeks. Two hundred unsexed day-old chicks were randomly assigned to five treatments with four replications, each replication having ten birds. A complete randomized design was used. The chickens were fed a grower diet supplemented with 0 (EM0), 30 (EM30), 50 (EM50), 70 (EM70) or 100 (EM100) ml of effective microorganisms per litre of water. Effective microorganism supplementation did not improve (P>0.05) diet and metabolisable energy intakes of the chickens. Effective microorganism supplementation reduced (P<0.05) growth rate and live weight of the chickens. Poorer (P<0.05) feed conversion ratios were observed in chickens supplemented with effective microorganisms. However, effective microorganism supplementation improved (P<0.05) crude protein retention of the chickens. Supplementation with effective microorganisms reduced (P<0.05) mortality rate of the chickens from 10 to 0 %. The second experiment determined the effect of supplementing diets with effective microorganisms on performance of male Ross 308 broiler chickens aged 22 to 42 days. The chickens were randomly allocated to five treatments with four replications, each replication having 10 birds. The chickens aged 21 days, weighing 474 ± 2g, were allocated to the treatments in a complete randomized design. The chickens were fed a grower diet supplemented with 0 (EMM0), 30 (EMM30), 50 (EMM50, 70 (EMM70) or 100 (EMM100) ml of effective microorganisms per litre of water. Effective microorganism supplementation did not improve (P>0.05) intake, DM digestibility, metabolisable energy, feed conversion ratio, fat pad weight and meat sensory attributes of the chickens. Effective microorganism supplementation reduced (P<0.05) growth rate, live weight and carcass weight of the chickens. However, effective microorganism supplementation improved (P<0.05) crude protein retention and crude protein content of meat of the chickens. Supplementation with effective microorganisms reduced (P<0.05) mortality of the chickens from 5 to 0 %. v It is concluded that effective microorganism supplementation to the diets of Ross 308 broiler chickens reduced growth rate and live weight of the chickens. However, effective microorganism supplementation improved crude protein retention and crude protein content of the meat of broiler chickens. Supplementation with effective microorganisms reduced mortality of the chickens to zero.

Thesis (PhD (Animal Sciences))--Stellenbosch University, 2011.
ENGLISH ABSTRACT: The current study was undertaken to determine the effectiveness of the current South African chicken conservation programmes in conserving the genetic diversity of village chicken populations. Village chicken farmer’s production constraints such as feed availability, chicken mortality, prevalence of diseases and chicken sales were influenced by gender, age, wealth status, production system, chicken flock size, type of chicken breed owned, accessibility of veterinary services, availability of supplements, vaccines and shelter. Considerable phenotypic heterogeneity in qualitative traits of indigenous chicken populations and their distributions in different regions of South Africa revealed the absence of selection on a preferred phenotype, showing that the population is not standardized. Genetic diversity studies using both microsatellites and mtDNA markers demonstrated that the conservation flocks of South African chickens displayed considerable genetic variability that is different from that of the assumed founder populations (field chicken populations). The indigenous chicken mtDNA further revealed multiple maternal lineages in South African chickens, where conservation flocks and field chicken populations shared these major haplotypes A, D and E which are presumed to be of Chinese, South East Asia and Indian subcontinent origin, respectively. The overall findings of the study increased awareness of the importance of genetic management and utilization of indigenous chicken genetic resources of South Africa. As a result, the study provides a base-line dataset to complement the decision-making process on designing proper conservation strategies for South African indigenous chicken genetic resources.
AFRIKAANSE OPSOMMING: Die huidige studie is onderneem om die doeltreffendheid van die Suid-Afrikaanse hoenderbewarings programme in die bewaring van genetiese diversiteit in dorphoender bevolkings. Dorp hoenderboere se produksie beperkinge soos voerbeskikbaarheid, hoender mortaliteit, die voorkoms van siektes en hoenderverkope word beïnvloed deur geslag, ouderdom, rykdom status, produksie sisteem, hoender kudde grootte, tipe hoenderras, toegang tot veeartsenydienste, beskikbaarheid van supplemente, inentstowwe en skuiling. Merkbare fenotipiese variasie in kwalitatiewe eienskappe van die inheemse hoenderbevolking en hul verspreiding in verskillende areas van Suid-Afrika, is aanduidend dat daar nie seleksie plaasvind vir ‘n voorkeur fenotipe nie, wat dus toon dat die bevolking nie gestandardiseer is nie. Genetiese diversiteit studies met behulp van beide mikrosatelliete en mtDNA merkers het getoon dat die bewaringskuddes van Suid- Afrikaanse hoenders vertoon merkbare genetiese variasie wat verskil van die veronderstelde stigter bevolkings (veldhoender populasies). Die inheemse hoenders mtDNA het verder onthul dat verskeie moederlike afstammelinge in die Suid Afrikaanse hoenders, major haplotipes A, D, E wat afkomstig is vanaf die Chinese, Suid-Oos Asië en die Indiese subkontitent onderskeidelik; gedeel word saam met die bewaringskuddes en die veldhoender populasie. Die algemene bevindige van die studie verhoog die bewustheid van die belangrikheid van genetiese bestuur en benutting van inheemse hoender genetiese hulpbronne van Suid-Afrika. As gevolg hiervan, verskaf die studie ‘n basis-lyn datastel vir die besluitnemingproses oor die ontwerp van ‘n ordentlike bewaring strategieë vir die Suid-Afrikaanse inheemse hoender genetiese hulpbronne.

In 1957, strains 3 and 4, two highly selected but unrelated strains of Single Comb White Leghorn chickens from Agriculture Canada's Animal Research Station at Ottawa were crossed to establish the Agassiz strain (strain 6). Further selection was imposed on strain 6 for improvements in hen-housed egg production (HHEP) based on part-records to 273 days and maintenance of egg weight, fertility, hatchability and viability. Data from 1957 to 1963 were analysed utilizing the SAS programs. There were no significant improvements in performance for HHEP, but egg weight, fertility, hatchability and viability were maintained. The lack of response to selection for HHEP was probably due to the following reasons: 1) too many traits were considered in the selection program at the same time, 2) negative genetic correlations existed among the selected traits, 3) strict adherence to a selection scheme was not practiced, 4) most of the traits under selection had low heritabilities, 5) the duration of the study was not long enough, and 6) the population size of strain 6 may not have been large enough. There was a significant decrease in body weight at 365 days (-4.33 ± 0.48, p < 0.0009). This decrease may be because of selection within full-sibs for more refined birds with better conformation as parents of the next generation. There were significant decreases in egg specific gravity at 225 and 450 days, and in Haugh units at 225 days, although Haugh units were increasing when measured at 450 days. The mean h²s for HHEP was 0.45, and the mean h²s for egg production to 273 days was 0.20 and the mean h²d for the same trait was 0.33. The mean h²s and h²d estimates for egg weight at 225 days were 0.60 and 0.50, respectively. The mean h²s and h²d for age at sexual maturity were 0.22 and 0.33, respectively, and those for body weight at 365 days were 0.53 and 0.62, respectively. The mean h²s and h²d for egg specific gravity at 225 were 0.64 and 0.33, respectively while those for Haugh units at 225 days were 0.57 and 0.68, respectively. These estimates were consistent with those found in the literature. The sctual selection differentials showed that selection was positive for egg production, while those for egg weight at 225 days were zero, and those for body weight at 365 days showed that selection was in the downward direction on the sires.
Land and Food Systems, Faculty of
Graduate

Hypomelanosis, a severe reduction in pigmentation, is a widespread phenomenon which affects many different vertebrate species, including humans and chickens. The cause(s) of various forms of hypomelanosis is (are) not known. The aim of this study was to determine the cause of hypomelanosis in a breed of white chickens (White Plymouth Rock x Pile Game). It was hoped that this hypomelanotic breed may provide insight into the etiopathogenesis of certain human hypomelanotic disorders, such as vitiligo and albinism. To determine whether melanocytes are present in the hypomelanotic skin, two melanocyte-specific assays were carried out, in situ DOPA histochemistry and a sensitive radiometric assay for tyrosinase. The results show that active tyrosinase was present in 8, 9 and 10 day skins. However, unlike normal black skin, the level of tyrosinase did not increase with age, suggesting that the melanocytes either die or that they do not continue to synthesise tyrosinase. Ultrastructurally, these melanocytes appeared to be morphologically normal and they did not show signs of premature degeneration. Unlike black chick melanocytes, however, they contained very few premelanosomes and fully melanised melanosomes were never observed, suggesting that hypomelanosis results from the arrested development (melanisation) of melanosomes in vivo. Two different experiments were carried out to determine whether this blockage in melanogenesis is intrinsic in the melanocyte or whether it is caused by extrinsic environmental factors. The outcome of these studies were conflicting: 1) In culture, white chick neural crest cells produced pigment, suggesting that the melanocyte is not defective. However, ultrastructural examination of these cultured melanocytes showed that they contained a large proportion of partially melanised melanosomes. 2) Black chick neural crest cells migrated into white skin explants and contributed towards pigment in the developing feathers, suggesting that the white chick tissue environment is also not defective. The results hint that hypomelanosis in the white chicks is caused by the interaction of at least two genetic defects: an intrinsic mutation of the melanocyte, as well as an extrinsic mutation in the melanocyte environment that, in combination, exert an inhibitory influence on melanin synthesis. This study shows that, in situ, white chick melanocytes share some features with ty-pos albino melanocytes and may be representative of this pigmentary disorder. White Plymouth Rock x Pile Game chicks may also be useful as a model for the multi-faceted disorder, vitiligo.

Thesis (MA. Agric. (Animal Production)) -- University of Limpopo, 2014
This study determined the effect of carrot meal supplementation on productivity and carcass characteristics of Arbor acres broiler chickens aged one to six weeks. Experiment I determined the effect of carrot meal supplementation on productivity of Arbor acre broiler chicks aged one to 21 days. Two hundred unsexed Arbor acre broiler chickens were randomly assigned to five treatments with five replicates, each replicate having ten birds. A completely randomized design was used in the first experiment. The treatments were 0 (UA0), 20 (AU20), 50 (AU50), 75 (AU75) or 100 (AU100) g of carrot meal supplementation per kg DM feed. Quadratic equations were used to determine levels of carrot meal supplementation for optimal feed intake, metabolisable energy intake and nitrogen retention of Arbor acre broiler chickens aged one to 21 days. Linear equations were used to determine relationships between carrot meal supplementation and productivity variables. Dietary carrot meal supplementation had no (P>0.05) effect on growth rate, live weight and feed conversion ratio of unsexed Arbor acre broiler chickens aged one to 21 days. Carrot meal supplementation, however, improved (P<0.05) metabolisable energy intake and nitrogen retention of the chickens. Dietary metabolisable energy intake and nitrogen retention of the chickens were optimized at different carrot meal supplementation levels of 40.5 and 53.57 g/kg DM feed, respectively. No chicken deaths were recorded. Experiment II determined the effect of carrot meal supplementation on productivity and carcass characteristics of female Arbor acre broiler chickens aged 22 to 42 days. The chickens were randomly allocated to five treatments with five replicates, each having 10 birds, in a completely randomized design. The supplementation levels were 0 (FA0), 20 (FA20), 50 (FA50), 75 (FA75), or 100 (FA100) g of carrot meal per kg DM feed. Quadratic equations were used to determine levels of carrot meal supplementation for optimal feed intake, feed conversion ratio, live weight, metabolisable energy intake and nitrogen retention of broiler chickens aged 22 to 42 days. Linear equations were used to determine relationships between carrot meal supplementation and production variables. Dietary carrot meal supplementation had no (P>0.05) effect on growth rate, live weight and carcass parts of female Arbor acre broiler chickens aged 22 to 42 days. Carrot meal supplementation improved (P<0.05) feed intake, feed conversion ratio, metabolisable energy intake and nitrogen retention of Arbor acre broiler chickens aged vi 22 to 42 days. Dietary feed intake, feed conversion ratio, live weight, metabolisable energy intake and nitrogen retention were optimized at different dietary carrot meal supplementation levels of 52.8, 63.8, 38.0, 42.0 and 44.3 g/kg DM feed, respectively. Dietary carrot meal supplementation had no effect (P>0.05) on tenderness and flavour of female Arbor acre broiler meat. Broiler chickens on diets supplemented with 20, 50 or 100 g of carrot meal per kg DM feed produced meat with better (P<0.05) juiciness values than those of meat from chickens not supplemented with dietary carrot meal and those supplemented with 75 g/kg DM feed. There was a positive relationship between carrot meal supplementation and chicken meat juiciness. It is concluded that carrot meal supplementation improved (P<0.05) metabolisable energy intake and nitrogen retention of unsexed Arbor acre broiler chickens aged one to 21 days. However, carrot meal supplementation had no effect (P>0.05) on growth rate, live weight and feed conversion ratio of unsexed Arbor acre broiler chickens aged one to 21 days. Carrot meal supplementation improved (P<0.05) intake, feed conversion ratio, metabolisable energy and nitrogen retention of female Arbor acre broiler chickens aged 22 to 42 days. However, carrot meal supplementation did not (P>0.05) improve growth rate and live weights of the chickens.

Characterization of village chicken phealth and management practices in the Amatola Basin of the Eastern Cape Province, South Africa By Njongenhle M. B. NYONI The majority of rural households in South Africa own village chickens which contribute significantly to their livelihoods. However, limited research has been conducted to characterize, understand and develop village chicken production in South Africa. This hinders the designing and implementation of village chicken-based developmental programmes that will benefit farmers in rural areas. Thus, it is imperative to initiate studies to describe village chicken production. This study was conducted to characterize village chicken production in Amatola Basin of the Eastern Cape Province of South Africa. Baseline information was gathered using a questionnaire survey of 81 identified from 7 out of 13 villages using snowball sampling technique. Consequently, 20 households were selected to participate in a monitoring study (from July 2010 to June 2011) through purposive sampling. Most (60%) chicken flocks were owned by women and mainly raised to meet household food requirements. Some (28.4%) farmers occasionally sold cocks and hens to neighbours, at an average price of R50 (USD7.55) per bird, as a way of culling their flocks and generating income. However, village chickens were mainly kept for food security rather than for their terminal benefit of cash. Although, all chicken flocks were produced under the scavenging feeding system, most (96%) flocks were provided with supplementary feed and drinking water. A majority (93.8%) of households also provided some form of shelter for their chickens. The mean cock to hen to chick ratio was 1:5:15. On average, iii each household owned 17 (±2 S.E.M.) chickens, and hens had 3.3 clutches per annum. Chicks hatched and chickens received as gifts represented the flock entries, while exits included mortality, consumption, sales and gifts or donations, in that order. Generally, both exits and entries were more pronounced in the summer season than in other seasons. Most (81.5%) farmers experienced chicken losses due to predation and health related problems. Parasitism ranked high amongst the village chicken health challenges. During monitoring, the endoprasites identified included nematodes, cestodes and protozoa. Coccidia were the most prevalent endoparasites. The chickens were also infested with a variety of ectoparasites namely: mites, lice, fleas and ticks. The sticktight flea Echidnophaga gallinacean was the most prevalent species. Although ectoparasite infestations were most pronounced in summer, almost all chickens harbored one or more of these parasites throughout the study period. The prevalence and intensity of parasite infestations were significantly (P<0.05) higher in the summer season compared to the other seasons. This was followed by the autumn, spring and winter seasons, respectively. The majority (77.5%) of farmers resorted to alternative remedies, mostly medicinal plants, for treating diseases and controlling parasites. Medicinal plants were used because they were locally available, cheap and perceived to be effective. Therefore, village chicken production in the rural Eastern Cape Province is characterised by several challenges which counter the significant role chickens play in the livelihood of rural households.

This thesis explores the genetic characterization of the mechanisms underlying complex traits in chicken through the use and development of bioinformatics tools. The characterization of quantitative trait loci controlling complex traits has proven to be very challenging. This thesis comprises the study of experimental designs, annotation procedures and functional analyses. These represent some of the main ‘bottlenecks’ involved in the integration of QTLs with the biological interpretation of high-throughput technologies. The thesis begins with an investigation of the bioinformatics tools and procedures available for genome research, briefly reviewing microarray technology and commonly applied experimental designs. A targeted experimental design based on the concept of genetical genomics is then presented and applied in order to study a known functional QTL responsible for chicken body weight. This approach contrasts the gene expression levels of two alternative QTL genotypes, hence narrowing the QTL-phenotype gap, and, giving a direct quantification of the link between the genotypes and the genetic responses. Potential candidate genes responsible for the chicken body weight QTL are identified by using the location of the genes, their expression and biological significance. In order to deal with the multiple sources of information and exploit the data effectively, a systematic approach and a relational database were developed to improve the annotation of the probes of the ARK-Genomics G. gallus 13K v4.0 cDNA array utilized on the experiment. To follow up the investigation of the targeted genetical genomics study, a detailed functional analysis is performed on the dataset. The aim is to identify the downstream effects through the identification of functional variation found in pathways, and secondly to achieve a further characterization of potential candidate genes by using comparative genomics and sequence analyses. Finally the investigation of the body weight QTL syntenic regions and their reported QTLs are presented.

Thesis (MSC. Agriculture (Animal Production)) --University of Limpopo, 2014
Two experiments were conducted to determine the effect of moringa seed meal supplementation on productivity and carcass characteristics of Ross 308 broiler chickens. The first experiment determined the effect of moringa seed meal supplementation on productivity of Ross 308 broiler chickens aged one to 21 days. Two hundred and fifty unsexed day-old Ross 308 broiler chicks were randomly allocated to five dietary treatments, replicated five times, and each replication having 10 chickens. A completely randomized design was used. The chickens were fed on a grower diet supplemented with 0 (M0), 5 (M5), 10 (M10), 15 (M15) and 20 (M20) g of moringa seed meal/bird/day. Moringa seed meal supplementation had no effect (P>0.05) on feed intake, metabolisable energy intake, nitrogen retention, feed conversion ratio and live weight of unsexed Ross 308 broiler chickens. Moringa seed meal supplementation improved (P<0.05) growth rates of unsexed Ross 308 broiler chickens aged one to 21 days. A moringa seed meal supplementation level of 13.3 g/kg DM feed optimized growth rate of Ross 308 broiler chickens aged one to 21 days. The second experiment determined the effect of moringa seed meal supplementation on productivity and carcass characteristics of female Ross 308 broiler chickens aged 22 to 42 days. The chickens weighing 558 ± 10 g/bird were randomly allocated to five treatments with five replications having 10 birds. The chickens, aged 21 days, were allocated to the treatments in a completely randomized design. The chickens were fed on a grower diet supplemented with 0 (FM0), 5 (FM5), 10 (FM10), 15 (FM15) and 20 (FM20) g of moringa seed meal per kg DM. Moringa seed meal supplementation had no effect (P>0.05) on feed intake, growth rate, feed conversion ratio, live weight, metabolisable energy intake, carcass weight, breast meat weight, abdominal fat pad weight, liver weight, heart weight, thigh weight, meat flavour, juiciness and tenderness of female Ross 308 broiler chickens. However, moringa seed meal supplementation improved (P<0.05) nitrogen retention and gizzard weights of female Ross 308 broiler chickens. vi It was concluded that moringa seed meal supplementation improved growth rate of unsexed Ross 308 broiler chickens aged one to 21 days. Similarly, moringa seed meal supplementation increased nitrogen retention and gizzard weights of female Ross 308 broiler chickens aged 22 to 42 days.

Thesis (MSc. Agriculture (Animal Production)) -- University of Limpopo, 2015
Three experiments were conducted to determine the effect of in ovo glucose injection on egg hatchability, chick hatch-weight, productivity and carcass characteristics of indigenous Potchefstroom koekoek chickens. A complete randomized design was used in all the three parts of the study (from incubation, 1-49 days old unsexed chickens and 50-91 days old female chickens). On day 18 of incubation the developing eggs were subjected to the following treatments: 0- (no glucose or water injected), 0+ (only water injected), 5, 10, 15 or 20 mg of glucose per egg. Each treatment had three replications and there were 20 eggs per replicate. A quadratic model was used to determine in ovo glucose injection levels for optimal egg hatchability, chick hatch-weight and chick to egg weight ratio of Potchefstroom koekoek chickens. In ovo glucose injection improved (P<0.05) egg hatchability, chick hatch-weight and chick to egg weight ratio of the chickens. Egg hatchability, chick hatch-weight and chick to egg weight ratio Potchefstroom koekoek chickens were optimized at different injection levels of 4.50, 10.43 and 12.00 mg of glucose per egg, respectively. Unsexed day-old chicks from the first experiment (according to their initial treatments and replicates) were used in a complete randomized design having six treatments, replicated three times, and having ten birds per replicate. Glucose injection levels increased (P<0.05) feed intake, growth rate, feed conversion ratio, live weight, metabolisable energy and nitrogen retention of female Potchefstroom koekoek chickens aged 1 to 49 days. However, growth rate, live weight, metabolisable energy intake and nitrogen retention of the chickens were optimized at glucose injection levels of 3.92, 4.36, 10.67 and 13.50 mg per egg, respectively. Female chickens from the second part of the study (according to their initial treatments and replicates) were used in a complete randomized design having six treatments, replicated three times, and having five birds per replicate. In ovo glucose injection levels improved (P<0.05) on feed intake, growth rate, feed conversion ratio, live weight, metabolisable energy and nitrogen retention of female Potchefstroom koekoek chickens aged 50 to 91 days. However, only feed conversion ratio and metabolisable energy intake of the chickens were optimized at glucose injection levels of 12.15 and 5.57 mg per egg, respectively. Injection level also improved (P<0.05) carcass, breast, v drumstick, thigh, wing, gizzard and liver weights of female Potchefstroom koekoek chickens aged 13 weeks. In ovo glucose injection increased (P<0.05) breast meat tenderness, juiciness and flavour of female Potchefstroom koekoek chickens aged 91 days. However, breast tenderness, juiciness and flavour of female Potchefstroom koekoek chickens were optimized injection levels of 13.50, 19.25 and 10.83 mg of glucose per egg, respectively. No chicken deaths were observe

Genomic prediction (GP) is a novel tool used for prediction of EBVs by using molecular markers. Within the last decade, GP has been widely introduced into routine evaluations of cattle, pig and sheep populations, however, its application in poultry has been somewhat delayed, and studies published to date have been limited in terms of population size and marker densities. This study shows a thorough evaluation of the benefits that GP could bring into routine evaluations of broiler chickens, with particular attention given to the accuracy and bias of Genomic BLUP (GBLUP) predictions. The data used for these evaluations exceeds the numbers of both individuals and marker genotypes of previously published reports, with the studied population consisting of up to 23,500 individuals, genotyped for up to 600K SNPs. The evaluation of GBLUP is preceded by evaluation of the variance components using traditional restricted maximum likelihood (REML) approach sourcing information from phenotypic records and pedigree, which provide an up to date reference for the estimates of variance components. Chapter 2 tested several models exploring potential sources of genetic variation and revealed the presence of significant maternal genetic and environmental effects affecting several commercial traits. In Chapter 3, a vast dataset containing 1.3M birds spread over 24 generations was used to evaluate changes in genetic variance of juvenile body weight and hen housed production over time. The results showed a slow but steady decline of the variance. Chapter 4 provided initial estimates of the accuracy and bias of genomic predictions for several sex-limited and fitness traits, obtained for a moderately sized population of over 5K birds, genotyped with 600K Affymetrix Axiom panel from which several chips of varying marker densities were extracted. The accuracy of those predictions showed a great potential for most traits, with GBLUP performance exceeding that of traditional BLUP. Chapter 5 investigated the effect of marker choice, with two chips used: one created from GWAS hits and second from evenly spaced markers, both with constant density of 27K SNPs. The two chips were used to calculate genomic relationship matrices using Linkage Analysis and Linkage Disequilibrium approaches. Markers selected through GWAS performed better in Linkage Analysis than in Linkage Disequilibrium approach. The optimum results however were found for relationship matrices which regressed the genomic relationships back to expected pedigree-based relationships, with the best regression coefficient dependent on the chip used. Chapter 6 formed a comprehensive evaluation of the utility of GBLUP in a large broiler population, exceeding 23,500 birds genotyped using 600K Affymetrix Axiom panel. By splitting the data into variable scenarios of training and testing populations, with several lower density chips extracted from the full range of genotypes available, the effect of population size and marker density was evaluated. While the latter proved to have little effect once 20K SNPs threshold was exceeded, the effect of the population size was found to be the major limiting factor for the accuracy of EBV predictions. The discrepancy between empirical results found and theoretical expectations of accuracy based on the similar genomic and population parameters showed an underestimation of the previously proposed requirements.

Thesis (MA.Agricultural Management (Animal Production)) -- University of Limpopo, 2013
The objectives of the study were to evaluate the productivity of the Vhembe egg production project and determine the management and socio-economic factors affecting productivity. The data were collected from 2005 to 2007. Thirty-two farmers from four municipalities were randomly selected. Each household received a once-off unit consisting of a cage with eighteen point of lay chickens 4x50 bags of laying mesh, feeding and drinking troughs. Production records from sampled farmers were used in the analysis. Data included monthly egg production, eggs consumed, eggs sold, income from eggs, production costs, monthly feed utilization and mortality. Primary data on educational standards, socio-economic characteristics (age and gender of the household head, farming size, level of education and alternative income, were collected using a questionnaire. The study revealed that sex, age and educational level had impact on production as low production was associated with older farmers and low level of education. These factors should be considered when planning community projects. Chicken rearing and ownership is often shared among the family members, in this study, the management was predominantly by women (63%) and children (18%). This may be an indication that if assistance efforts are targeted towards women, village poverty could be significantly reduced. It is concluded that the low income accrued from the project explains the reason for high abandonment or neglect of the project. The income received from the project is smaller than the government grants and as such not attractive. It is not surprising that presently most farmers have abandoned the project. It is noted that if labour costs had been taken into consideration, the project would be running at a serious loss and the resultant output would discourage even the most enthusiastic farmers.

This study was designed was to determine the effects of additive supplementation of Moringa oleifera leaf meal on growth performance, digestibility, digestive organ size, intestinal integrity, bone ash content and bone breaking strength, as well as meat yield and quality of broiler chickens. A total of 2400 day-old unsexed Cobb-500 broiler chicks were randomly allocated to 5 treatment groups: T1, positive control, 668 g/ton Salinomycin and 500 g/ton Albac; T2, T3 and T4 contained graded levels of MOLM at 1 percent, 3 percent and 5 percent of dry matter (DM) intake, respectively; and T5, a negative control (0 percent additives) in a complete randomized design experiment. Except for week one, FI and FCR was highest (P < 0.05) in T4 birds; while T1 birds had the highest FI in the period of 22 to 27d (P < 0.05). Throughout the production period, birds supplemented with MOLM had the highest BW (P < 0.05) than the birds fed the control diets. Feed intake (FI) and feed conversion ratio (FCR) among treatments was highest (P < 0.05) in T4 birds during the period of 8 to 14 d; and was highest (P < 0.05) for T1 birds in the period of 22 to 27d. Protein efficiency ratio (PER) and energy utilization efficiency (EEU) ratios were statistically significant among treatments (P < 0.05). However, dietary treatments had no effect (P > 0.05) on the weights of the heart, liver, spleen, or the gizzard, although the bursa for T2 birds was the lightest (P < 0.05); while gizzard erosion score was highest in T2 birds. All of the nutrients measured, except for fat, had negative intercepts that were significantly different (P < 0.05) from zero, indicating the presence of endogenous fecal losses. Tibiae length (TL) was highest in T2. The dried defatted weight (DW) was heaviest (P < 0.05) for T3 (11.20 ± 0.347) and T5 (11.08 ± 0.328). A positive correlation (r = 0.667; P < 0.01) between TW and DW was observed. There were no dietary effects on bone breaking strength (BBS), but T1 tibiae had highest resistance to breaking force (T1 > T4 > T3 > T2 > T5). Calcium was highest (P < 0.05) in T1; and lowest inT2 and T5. Phosphorus levels were lowest (P < 0.05) in T1; and highest (P < 0.05) in T5 compared. The highest Ca: P ratio was obtained in T4 (P < 0.05); while the ash percent was highest (P < 0.05) in T1. Drip loss increased as L* values increased; and a negative correlation was observed between L* and pH. On D1, C18: 0 and C22 in T2, while C15:0 was highest in T4. On D1, C20:2, C20:3n6 and C22:6n3 were highest in T2 (P < 0.05); T4 had the highest C18:3n6 (P < 0.05), while C20:2 was highest in T5 (P < 0.05). The P/S ratio on D1 was highest in T4; while n-6/n-3 was highest in T1; and n-3 was highest in T3. On D8, the n-3 was highest in T1 (P < 0.05). Results of the current study show that supplementation of M. oleifera leaf at additive levels of up to 5 percent of the bird’s DMI does have the potential to influence the bird performance without any detrimental effects on nutrient utilization, bird health, bone strength and/or meat quality, which can be concluded that MOLM enhanced the bird’s genetic potential for optimal productivity.

Five experiments were conducted to study genetic influences on growth and early egg production in chickens. Parental lines included White Plymouth Rocks divergently selected 25 generations for high (H) and for low (L) 56-day body weight and a closed population of Jersey Black Giants (JJ). F₁ generation crosses (sire listed first) included HL, LH, JL, and JH, and an F₂ generation from HL x HL matings. Comparisons also include dwarf and nondwarf chickens from the H and L lines. Symbols for dwarfs and nondwarfs within the high line were HD and HN and within the low line were LD and LN. Growth patterns of dwarfs more closely approximated that of the H than that of the L line, regardless of whether measured in a chronological or physiological context. Although body components were usually smaller for dwarfs than their within-line nondwarf counterparts, on a relative body weight basis, dwarfs were more uniform than nondwarfs. Dwarfs were also more uniform than normals for age at first egg. The dw allele reduced yolk formation and ovulation rate, resulting in less erratic ovulation and lowering the incidence of defective eggs. Differences between reciprocal crosses were minor as were recombination effects for the traits measured. There was little, if any, evidence of heterosis for body weight and skeletal and lean traits prior to 57 days of age, at sexual maturity, or 60 days after the onset of lay. When present, heterosis was general for most traits measured with the exception of those associated with adiposity which were population dependent. Modest heterosis was observed for the age of inflection of the growth curve, age at sexual maturity, egg production traits, and body weight change during a 60-day laying period. Hybrid vigor for egg production traits resulted in more normal eggs via regularity of yolk development and synchronization of ovulation. The onset of sexual maturity was accompanied by the achievement of a population-dependent body composition, which was generally independent of age and body weight. Under ad libitum feeding, lean carcass traits appeared to be more critical to the onset of sexual maturity than adiposity, as evidenced by greater differences between mature and immature pullets for the former than for the latter traits. The exception to this pattern was the line selected for low juvenile body weight where adiposity traits appeared to be primary.
Ph. D.

Fetal programming results from stressors during fetal development and may influence the occurrence of disease later in life. Maternal nutritional status and/or environment can affect renal development by inducing limited nephron endowment at birth, which results in diseases such as hypertension and coronary heart disease in mammals. Birds are likely to be effective models for this process because, like mammals, they have high pressure cardiovascular systems, mammalian-type nephrons and are homeothermic. This project uses the chicken embryo to explore physiological responses of disrupted hydration state thereby providing insights into renal fetal programming. Under normal conditions the chorioallantoic membrane (CAM) and developing avian kidney work in unison to ensure a proper balance of ions and water within the egg. White leghorn chicken eggs were incubated at 37.5oC±0.5oC and either <35%, 55-60% (normal) or >85% relative humidity. Amniotic fluid serves as the drinking source for the embryo late in development; its composition is important to salt and water homeostasis. High amniotic fluid osmolality increased the blood osmolality for embryos exposed to low humidity incubation thereby indirectly influencing the renal developmental program of the embryos from this group. Indeed estimated filtering capacity was doubled in the low humidity group (6.77 ± 0.43 mm3) compared to normal (4.80 ± 0.33 mm3) and high (3.97 ± 0.30 mm3) humidity groups. The increased filtering capacity seen for those embryos from low humidity may indicate the ability for more efficient recovery of water if similarly stressed as an adult bird. All embryo populations maintained similar oxygen consumption (0.075 ml/min - 0.37 ml/min), hematocrit (15 % - 32 %) and hemoglobin values (4 g/dl - 9 g/dl), thus displaying control over these aspects of the internal environment despite the obvious environmental insult of extreme incubation humidity. These results signify the embryo's immature kidney, along with lower gastrointestinal tract, functions much like the adult form maintaining homeostasis, although the mechanisms may differ. The overall benefits of this research included better understanding of the role the kidney during embryonic development and determining whether environmental factors, such as humidity, leave an imprint on morphological and physiological aspects of the urinary system of the embryo and water compartments of the egg.

Egg production in the domestic chicken, Gallus domesticus has been improved over the last 60 years to around 300 eggs per year or an egg every 28.8 hours. Response to selection for egg production by standard, however, has reached a plateau and many researchers agree that further improvement is unlikely by conventional selective breeding strategies. This thesis describes the identification and sequencing of the chicken homologue of the mouse Clock gene and its characterisation by polymorphism detection, chromosomal location, and expression in a variety of adult tissues and embryos.Several tests were conducted and results given. The study contributes substantially to the knowledge of the structure of the CLOCK gene in the chicken and its expression as a circadian rhythm gene in adults and embryos. Further, the work provides evidence for function of CLOCK outside the circadian system and has provided molecular markers with future applications in developmental biology and egg production in Gallus domesticus

Due to the importance of insulin-like growth factor-I (IGF-I) in regulating many physiological and metabolic processes, the IGF-I gene was chosen as a candidate gene to study trait associated polymorphisms in chickens. A PstI restriction fragment length polymorphism (RFLP) was detected at the 5' region of the gene and mapped to about 7 Kb upstream of the published promoter sequence. Analysis for association of the marker with traits of economic importance in an unselected, random-bred population of 359 White Leghorns revealed a significant association with egg weight (P ≤ 0.05) and specific gravity (P ≤ 0.05). There was also a trend for association with juvenile body weight (P = 0.08) but not adult body weight. For egg weight the PstI (-/-) genotype was associated with lower egg weight as compared to the heterozygote or the PstI (+/+) genotype. The PstI marker also was found to be significantly associated with differences in trait correlations. A regulatory loop that co-ordinated feed consumption, body weight, egg weight and rate of egg laying was detected, and this regulatory loop differed among the IGF-I genotypic classes. In the PstI (+/-) genotype, the degree of correlation between some of the traits was time dependent, while in the PstI (+/+) genotype it remained constant through the different periods of measurement. Since IGF-I is known to play an important role in immune functions, the association of the IGF-I genotypes with immune traits was also investigated. A significant association was found for delayed type hypersensitivity, interferon production and T-cell count (P ≤ 0.05). Individuals belonging to the PstI (+/-) genotypic class exhibited higher immune response, reflected by the delayed type hypersensitivity reaction and antibody the interactive effects of marker genotypes in the GH, GH-receptor and IGF-I genes on traits and trait correlations indicated that the three are part of an epistatic pathway, wherein the phenotypic consequences of

A four-chamber indirect calorimeter was constructed to evaluate energy utilization by laying hens as affected by dietary energy, protein and amino acid levels and by housing temperature. Heat production was measured by indirect calorimetry and metabolizable energy was determined for each diet. Net energetic efficiency was calculated as the slope of the regression of energy balance (metabolizable energy intake - heat production) on metabolizable energy intake. Hens fed diets formulated without protein specifications to provide amino acid levels equivalent to those provided by 14.5 or 16% protein, had higher (P < .05) net energetic efficiencies than hens fed diets formulated with specified protein levels. Addition of 3% animal fat to the higher (16% protein) amino acid diets produced the greatest increases (P < .05) in net efficiency, but decreased (P < .05) efficiency in the lower (14.5% protein) amino acid diet formulated without a protein specification. Metabolizable energy available for production was improved (P < .05) with animal fat additions to all but the diet formulated to the higher (16% protein) amino acid levels. Animal fat, cottonseed oil, corn oil, cod liver oil and safflower oil were used to determine effects of fat source on energy utilization by laying hens at 21.1 C. Higher net efficiencies were obtained for the cottonseed and safflower oil diets (99.1 and 99.8%, respectively) than for the basal diet (90.6%) or the other fat sources (cod liver oil = 86.0%, corn oil = 87.3%, animal fat = 91.1%). Full vs. meal (two 1-hr periods daily) feeding and total sulfur amino acid deficiency effects on energy utilization were evaluated. Meal feeding reduced (P < .05) metabolizable energy available for production while increasing (P < .05) maintenance metabolizable energy requirements. Feeding regime did not reverse the decline (P < .05) in net efficiency (89.2-89.7 to 81.7-82.6%) observed with total sulfur amino acid deficiency. Hens were fed either 7% animal fat or 7% corn oil and maintained at 10, 21.1 and 32.2 C to study effects of fat source and temperature on energy utilization. From 10 to 32.2 C, net energetic efficiency increased from 87.6 to 92.6% with animal fat. Corn oil showed the highest net efficiency (93.9%) at 10 C, while animal fat was highest (92.6%) at 32.2 C. Hens fed animal fat required the most (P < .05) maintenance metabolizable energy and had the highest (P < .05) fasting heat productions at each temperature.

A procedure was developed to examine factors contributing to skin strength of meat-type chickens. Skin breaking strength was initially measured in lines of chickens divergently selected for high (H) and low (L) juvenile body weight, their reciprocal crosses (HL and LH), and an F₂ generation derived from HL and LH matings. Skin of chicks from the LL line was weakest, that from the HH and LH matings strongest, and that from HL and F₂ matings was intermediate. Percentage heterosis for breaking strength was significantly positive while percentage recombination was not significant. Skin breaking strength and protein, fat, moisture, and total collagen concentrations of skin from the breast, thigh, and back of male and female commercial broilers were then examined in response to diets containing relatively wide or narrow ratios of calories to protein (C:P). Comparisons were made at 28, 42, and 56 days of age. Chickens fed diets containing wider C:P ratios had weaker skin than those fed diets with narrower C:P ratios, with the differences being greater at older than at younger ages. Males had stronger skin than females. Among body sites, breast skin was stronger than thigh skin with that from the back being intermediate in strength. Skin breaking strength did not appear to be consistently associated with either the protein, fat, or collagen concentrations in the skin. Skin from broiler chicks fed diets with differing C:P ratios was also examined histologically. Males had stronger and thinner skin than females, with the differences in thickness due primarily to differences in the thickness of the hypodermis. Regardless of sex, feeding diets containing wider C:P ratios resulted in weaker and thicker skin. The thicker skin was associated with an increase in the thickness of the hypodermis and a decrease in the thickness of the dermis and epidermis. With the exception of differences between back and thigh skin, increases in breaking strength occurring between skin from different sites were associated with a reduction in total skin thickness and in the thickness of the hypodermis. It was concluded that increased hypodermis thickness and/or decreased thickness of the dermis and epidermis reduced skin strength. Two experiments were conducted in which skin strength was examined in relation to heat stress and supplemental ascorbic acid. In the first experiment, chicks fed diets containing 0 or 100 mg of ascorbic acid per kg of diet were subjected to either a constant ambient temperature of 23C, a constant ambient temperature of 32C, or a treatment consisting of 32C from 1600 to 1200 hr and 400 from 1200 to 1600 hr (32/400). Both heat stress and supplemental ascorbic acid tended to increase collagen concentrations in the skin, but differences in breaking strength were inconsistent in response to these treatments. Supplemental ascorbic acid, however, partially alleviated reductions in body weight due to heat stress but did not decrease body temperatures of heat-stressed chicks. In the final experiment, diets containing either 0, 200, or 400 mg/kg of supplemental ascorbic acid were fed to chicks maintained at ambient temperatures of 23 and 34C. Contrary to previous observations, ascorbic acid failed to ameliorate the depressive effect of heat stress on body weight. Supplemental ascorbic acid tended to reduce adrenal, bursa of Fabricius, and spleen weights but had no effect on heterophil and lymphocyte numbers or ratios. Adrenal ascorbic acid concentrations were not significantly affected by supplemental ascorbic acid and plasma ascorbic acid levels were inconsistent among treatment groups. Neither supplemental ascorbic acid nor heat stress significantly influenced skin strength. It was concluded that supplemental ascorbic acid was not beneficial in improving skin strength in commercial broiler chicks.
Ph. D.

Feed accounts for the highest cost associated in poultry production, with energy-containing feedstuffs being the most expensive portion of the cost of feeding. The increasing demand for poultry meat gives reason to determine accurate apparent metabolizable energy (AME) values for various feedstuff through measuring energy utilization in the birds. The adaptation length of birds fed an experimental diet may affect the determined AME value due to the diet matrix and physiochemical properties of the feedstuff. Therefore, the objective of this thesis was to evaluate a select group of energy-containing feedstuff with different diets and with factors such as coccidia challenge and exogenous enzyme supplementation that may influence the determined AME values in broiler chickens.

Thesis (M.Sc. (Animal Production)) --University of Limpopo, 2019
Two experiments were conducted to determine the effect of dietary threonine level on production performance and carcass characteristics of Ross 308 broiler chickens. In each experiment the diets were isocaloric and isonitrogenous but with different dietary threonine levels.The first part of the study determined the effect of dietary threonine level on feed intake, growth rate, mortality and carcass characteristics of Ross 308 broiler chickens aged between Day 1-21. A total of 150 unsexed day-old chicks were used in a complete randomized design having 5 treatments (6.4, 7.5, 8, 8.5 and 9g of threonine/kg DM feed), replicated three times and having ten chickens per replicate. The second part of the study determined the effect of dietary threonine level on feed intake, digestibility, growth rate, mortality and carcass characteristics of male Ross 308 broiler chickens aged between Day 22-42. Seventy-five male chickens were used in a complete randomized design having 5 treatments (6.4, 7.5, 8, 8.5 and 9g of threonine/kg DM feed), replicated three times and having five chickens per replicate. A quadratic regression model was used to determine the optimal productivity of the chickens while a General Linear Model (GLM) procedures for the statistical analysis of variance was used to detect dietary treatment effects. Where there were significant differences (P<0.05), Turkey’s honestly significant difference test (HSD) was used for mean separation. The chickens were slaughtered at the ages of 21 and 42 days for Experiments 1 and 2, respectively, following ethical standards as recommended by the University of Limpopo Animal Research Ethics Committee (AREC/12/2017: PG). Two chickens per replicate for both studies were slaughtered for the determination of carcass characteristics (carcass and organ weights, gut organ digesta pH and gastro-intestinal length measurements). Dietary threonine levels used in this experiment affected (P<0.05) feed intake, growth rate, live weight, metabolisable energy (ME) intake, nitrogen retention, feed conversion ratio and gut organ weights and lengths of unsexed Ross 308 broiler chickens aged 21 days. Dietary threonine level did not affect (P>0.05) diet digestibility. Feed conversion ratio, pH of the proventriculus digesta, gut intestine length and caecum length of unsexed broiler chickens were optimized at different dietary threonine levels of 9.6, 8.5, 6.6 and 8.4 g/kg DM, respectively. Dietary threonine levels had an effect (P<0.05) on feed intake, diet digestibility, metabolizable energy, live weight, proventriculus pH values, GIT length, gut organ and carcass organ weights of male Ross 308 broiler chickens between 22 to 42 days of age. Proventriculus and large intestine weights were optimized at different dietary threonine levels of 7.5 and 9.1 g/kg DM feed, respectively. Dietary threonine level did not affect (P>0.05) growth rate, feed conversion ratio of male Ross 308 broiler chickens between 22 to 42 days of age. It is concluded that dietary threonine levels used in this study affected production performance of younger broilers (Day 1-21) more than that of older birds (Day 22-42). However, production variables were optimized at different dietary threonine levels. This has implication on diet formulation for the chickens and no linear response could be established
National Research Foundation (NRF), and the Department of Agriculture, Forestry and Fisheries (DAFF)

The experiments reported in this dissertation explored the effects of selection for antibody response on other immunological measures and on production traits. The role of thyroid hormones in antibody response was also studied. Selection for high (HA) and low (LA) antibody response to sheep erythrocytes altered subclasses of antibodies in different ways. In line LA antibody response was primarily mercaptoethanol-susceptible (IgM), while the line HA response was primarily mercaptoethanol-resistant antibody (IgG). Sublines of HA and LA were developed with all possible combinations of major histocompatibility complex haplotypes B¹³ and B²¹. An experiment was conducted to test Marek’s disease resistance of these haplotypes in line LA. Mortality from a natural exposure was high for all three groups, and there was no difference among haplotypes. Correlated responses of growth and reproductive traits in lines HA and LA were due to genetic correlations with antibody response. These genetic correlations were generally negative and are suggestive of differential allocation of resources. Phenotypic correlations were generally very small. Changes in allelic frequencies at alloantigen systems were also observed in response to selection. Experiments designed to study the role of thyroid hormones on antibody responses showed no direct relationship. Chickens from lines HA and LA fed thiouracil exhibited hypothyroidism but did not differ from controls in antibody response. Differences in thyroid hormone concentrations between lines of dwarf and non-dwarf White Rocks selected for high and low juvenile body weight bore no relationship to differences in antibody responses.
Ph. D.

Genetic Variation influencing reproduction and growth of White Rock chickens was studied. The populations used were lines high (HH) and low (LL) selected for 56-day body weight, reciprocal F₁ crosses (HL and LH), F₂ crosses of the F₁ and dwarf populations (HD and LD) originating from lines HH and LL. Inheritance of egg production and egg composition was examined (Experiment 1). Although reciprocal effects were generally unimportant, nonadditive genetic variation was evident for reproductive traits and egg component measures of shell and yolk. Comparisons in Experiment 2 involved dwarf and normal chickens from lines HH and LL. Yolk weight increased while the ratio of albumen to yolk decreased with age. Line and genotype differences were evident for egg shell and yolk traits while line by genotype interactions showed that genetic background influenced expression of dw. Embryo growth of dwarfs was similar to that of nondwarfs at all ages (Experiment 3). Reduced egg size of dwarf pullets did not reduce embryonic weights. Embryo length and weight and yolk sac weight were greater for line HH than LL. In Experiment 4, allometric growth and cellular content of brains were measured in normal and dwarf chickens from lines HH and LL and reciprocal F₁ crosses from hatch to maturity. Allometric slopes were similar for lines HH and LL with significant heterosis. Within an age, DNA, RNA and protein content (mg/g) were similar for all populations. Brain weight differences were due to equal filling of a greater number cells for line HH than LL. Final brain size was influenced more by embryonic hyperplasia than postembryonic hypertrophy. The final experiment measured growth and cellular content of pectoralis and gastrocnemius muscles in populations HH, LL and F₁ from hatch to day 273. HH chicks had a smaller DNA unit size and a greater unit number than LL chicks at hatch. During rapid muscle growth, cell size was larger for HH than LL chickens. Pectoralis muscle grew at a faster rate than gastrocnemius muscle. Also cellular filling as measured by the DNA unit size was higher for pectoralis than gastrocnemius muscle through day 4. By day 10 the pattern reversed with values greater for gastrocnemius than pectoralis muscle.
Ph. D.

Four experiments were conducted to examine the energetic responses of chicks from lines divergently selected for 56-day body weight to caloric intake. Caloric overconsumption or calorie-protein imbalances were induced by providing glucose solutions (16% w/v) in lieu of water in the first experiment, and by force-feeding the diet to crop capacity in the subsequent trials. Feed restriction was accomplished by providing 75% of ad libitum intake each day. Both low-weight (LN) and high-weight (HN) chicks reduced their voluntary feed intake when glucose solutions were provided; caloric intake was reduced by 25% and 10% in LN and HN chicks, respectively. Weight gain and the deposition of protein and ash in the carcass were reduced by the glucose treatment, but carcass lipid deposition was increased. The efficiency of energy deposition was improved in HN but unchanged in LN chicks. Feed restriction reduced feed intake, energetic efficiency, and gain of body weight, carcass dry matter, protein, lipid and ash. The suppression of lipid deposition was more severe in the LN chicks than in the HNs. Overfeeding of a complete diet increased body weight, the deposition of all carcass constituents, and energetic efficiency. Feed restriction exerted an opposite effect, with the LN chicks exhibiting more pronounced responses than the HNs. Determined metabolizable energy values of the diet differed among feeding treatments and between lines, and line by feeding treatment interactions were observed. Body core and surface temperatures demonstrated that the LN chicks were less able than the HNs to maintain homeothermy under treatments imposed. Heat production tended to be increased by overfeeding and reduced by feed restriction. Metabolic rates were higher in LN than in HN chicks when the chicks were fed ad libitum or subjected to restricted feeding, but not when force-fed. The latter observations were attributed to differences in physical activity. Plasma triiodothyronine (T₃) of LN chicks was increased by force-feeding and reduced by restricted feeding, but no significant differences in plasma T₃ occurred in HNs. Thyroxine (T₄) and the T₃:T₄ ratios were unchanged by feed intake, although LNs exhibited higher plasma T₃ and T₃:T₄ ratios than HNs. Although endocrinological changes to caloric consumption analogous to those observed in mammals occurred, energy balance did not confirm the existence of diet-induced thermogenesis in the fowl.
Ph. D.

The gene encoding chicken growth hormone (GH) was isolated from a chicken genomic library. The size of the gene was 4 kb. It was digested with PstI and subcloned into pUC18. Three of the PstI fragments were used for restriction fragment length polymorphisms (RFLPs) analysis at the GH locus in two chicken strains (fat and lean line). Four polymorphic sites were detected using a PstI fragment (PII) as a probe. One polymorphism was located at a SacI restriction site (PS1), and three at MspI sites (PM1, PM2 and PM3). A method based on polymerase chain reaction (PCR) was developed for detecting polymorphisms at PM3 site. A fragment of 823 base pairs which contained the PM3 polymorphic site was amplified. Three genotypes (+/+,$-$/$-$ and +/$-$) were distinguished by examining the MspI digested PCR products in either agarose or polyacrylamide gel.
Ten anonymous cDNA clones were also isolated from a chicken liver cDNA library and used for RFLPs analysis. Three of these clones were found to be able to detected RFLPs at MspI sites in chicken strains (strain 7, 8, 9, 8R, S and K) indicating that a high frequency of genes are polymorphic and can be used as markers in mapping experiments. One of the three clones was present on a haploid genetic element. Segregation analysis showed that the inheritance of this haploid gene was determined by the genotype of the female parent.

To examine if a rhythm can be entrained in either heart rate or oxygen consumption in late stage embryos (days 17-19.5) with light as a zeitgeber, chicken embryos were incubated in complete darkness (D:D) and 12:12 light:dark cycle (L:D). Light had no impact on oxygen consumption (390 µL O2∙min-1∙egg-1) but increased heart rate for non-internally pipped embryos (260 to 270 beats∙min-1 during light cycle). Oxygen consumption increased independent of pipping while heart rate increased (255 to 265 beats∙min-1) in D:D embryos due to pipping. A light-induced rhythm or effect occurred in heart rate but not oxygen consumption, suggesting heart rate and oxygen consumption may be uncoupled.

The objective of the study was to determine the effects of Aloe ferox inclusion in drinking water on growth performance, blood biochemistry, physico-chemical characteristics, fatty acid profile and oxidative stability of broiler meat. The importance of A. ferox as a medicinal plant and factors that influence its utilization by communal poultry farmers were also investigated by use of a questionnaire survey. The survey revealed that the majority of respondents (84.6%) faced health challenges in their chickens and many relied (96.2%) on A. ferox to treat diseases and control parasites. The study also revealed that the choice of medicine (traditional or conventional) was influenced (P<0.05) by level of education and income. In the second phase of the research, a total of 600 Ross 308 day-old broilers, were randomly put in 6 treatment groups with 4 replicates, each having 25 birds. Fresh aqueous A. ferox leaf juice (ALJ) was administered in drinking water at a dosage of 20ml/litre to T1, T2 and T3 from day one to day 35, day one to day 14 and day 15 to day 28, respectively. Birds in T4 and T5 (positive controls) were treated with terramycin at the recommended dosage of 14g/litre of drinking water from day one to day 6 and from day 15 to 20, respectively; and birds in T6 (negative control) received distilled water from day 1 to 35. Feed Intake (FI), average daily gain (ADG) and feed conversion ratio (FCR) were calculated for the 5 week trial. After slaughter, carcass characteristics particularly dressing percentage (DP) and relative organ weight (ROW) were calculated. Serum biochemistry was also determined. For meat quality, pH and color were recorded 45 minutes and 24 hours after slaughter from the breast muscle. Fatty acid profiling and oxidative stability were determined using meat samples from the breast and thigh muscles. The results for growth performance showed that thebirds which were given A. ferox for the first two weeks (T2) consumed significantly (P>0.05) more feed (189.4g) than those in the negative control (159.6g) at the beginning of the starter phase. Subsequently, their ADG recorded on day 7 (27.1g) and day 14 (43.1g) were significantly (P<0.05) higher than the negative control (22.8g and 36.2g, respectively). Significant treatment effects (P<0.05) for FCR were reported in the 4th week for the birds that received A. ferox throughout (T1: 3.5). Carcass characteristics were not significantly (P>0.05) affected by A. ferox inclusion in drinking water. The highest high density lipoprotein (HDL) values (2.78 mmol/L) were yielded in T2and T3 had the lowest values (0.61mmol/L) for low density lipoprotein (LDL). For physico-chemical properties, no significant effects (P>0.05) of treatment on pH, colour, cooking loss and tenderness were observed. However, the group treated with A.ferox throughout the production cycle, had the highest pH (6.2), lowest lightness (38.5), highest redness (4.1), highest tenderness (13.86N) and the lowest cooking loss (12.6%). Significant treatment effects (P<0.05) were observed on the composition of the PUFA eicosatrienoic acid (C20:3c8, 11, 14(n-6)) of the breast muscle which was significantly lower in the A. ferox treatment groups than the positive controls. For the thigh muscle, there were significant (P<0.05) treatment effects on composition of palmitoleic acid (C16:1c9) and g-linolenic acid (C18:3c6, 9, 12 (n-3)). No significant (P>0.05) effects were found on oxidative stability of both thigh and breast muscles. In conclusion, the wide use of A. ferox by communal chicken farmers showed its importance as a medicinal plant. Apart from it being an effective medicinal plant, A. ferox inclusion in drinking water results in improved FI, ADG, reduced in LDLC and better g-linolenic and palmitoleic acid composition in the meat.

Continuous multi-phase feeding of broiler chickens was evaluated to optimize broiler nutrition and minimize environmental impact related to excess nitrogen in poultry manure. Four experiments were conducted. Experiments 1 and 2 studied effects of continuous multi-phase feeding during a 3-week starting period using battery brooders while experiments 3 and 4 evaluated multi-phase feeding during a traditional 7-week growing period using both battery brooders and floor pens. In the first and second experiments, the nutrient content of the multi-phase diets was changed every 24 hours in comparison to single-phase feeding. Results indicated that during the starter period, continuous multi-phase feeding had no significant influence on feed consumption, daily gain, feed to gain ratio or fecal nitrogen. In the third and fourth experiments, a four phase industry type broiler feeding program was compared to intensive multi-phase feeding programs created by linearly blending three different diets based on typical industry nutrient values and a commercial nutrient modeling computer program (EFG Natal®). In both intensive multi-phase feeding programs, the diets were changed every three days over a 7-week growth period. Broilers in experiment 3 were raised in Petersime battery brooders to primarily access nitrogen balance while birds in experiment 4 were raised in a floor pen on pine shaving litter to resemble commercial broiler production. The results indicated that intensive multi-phase feeding improved body weight gain and feed to gain ratio only in weeks 5 and 6 but not during the overall 7-week period. Nitrogen excretion and nitrogen retention were unaffected by the intensive multi-phase feeding systems. Economic analysis indicated that intensive multi-phase feeding programs could potentially lower feed costs per kilogram of gain. However, the high cost of implementing a continuous multi-phase feeding system may not justify the relatively small gain in lower feed cost per kilogram of gain. In conclusion, continuous multi-phase feeding of broiler chickens using corn-soy diets does not appear to be justified by either increased performance or reduced nitrogen excretion.

Assignment (MPhil)--University of Stellenbosch, 2004.
ENGLISH ABSTRACT: The aim of this study was to evaluate the performance and profitability of different dietary specifications for broiler chickens slaughtered at 35 days of age. Two trials were performed to evaluate different production parameters. The results of these trials were compared to the predicted results of the EFG broiler model. No carcass data were available for the two trials mentioned above. Therefore, in order to evaluate the accuracy of the broiler model when predicting carcass characteristics, two published data sets (Leeson et al., 1996a) were used. Predicted and actual values were compared, evaluated and discussed. Two broiler trials were performed. In Trial One the amino acid density decreased throughout the range of three treatments from prestarter to finisher diets. In Trial Two the amino acid density decreased only in the four finisher diets. The main difference between predicted and actual results was the response to body weight. The model predicted a steady increase in feed intake to compensate for the lower dietary specifications while body weight did not change significantly. This increase in feed intake seems to be enough to maintain body weight. Trial birds also increased their feed intake as dietary amino acid density decreased, but this compensation seemed to be too low to maintain body weight compared to the control diet. The birds may find it easier to compensate when they have time to adapt to the specification. There is evidence in the literature that birds need seven days to adapt their feed intake to a lower feed specification (Leeson et al., 1996a). It can be speculated that the trial birds started to loose body weight due to a lower amino acid intake in this period. The model seems to adapt feed intake immediately after a change in diet specification. The simulation on literature data lead to the following conclusions: 1) Broilers posses the capacity to increase their feed intake with at least 65% should finisher diets with lower amino acid and energy concentrations be supplied. If only the energy concentration of finisher diets were decreased, the increase in feed intake will be around 30%. (see Table 16 and 23) 2) The accurate prediction of feed intake from the given dietary specification has a major influence on the accuracy of the prediction of broiler performance. 3) Amino acid density and DLys:ME ratio plays a significant role in the control and prediction of feed intake. The EFG broiler model is based on sound scientific principles. The model is comprehensive and can be used for a wide range of environmental and management conditions as well as dietary conditions. The nutritionist can use the model with confidence to assist in practical feed formulation. The actual strength of the model lies in the time and money being saved compared to practical trials.
AFRIKAANSE OPSOMMING: Die doel van hierdie studie is om die prestasie en winsgewendheid van braaikuikens te bepaal wanneer voere met verskillende digthede tot op 35 dae gevoer word. Twee eksperimente is uitgevoer om produksieresultate te evalueer. Die resultate van hierdie eksperimente is met die voorspelde waardes uit die EFG simulasie-model vergelyk. Aangesien geen karkasdata vir bogenoemde eksperimente beskikbaar was nie, is twee gepubliseerde datastelle gebruik om hierdie deel van die model te evalueer (Leeson et al., 1996a). Twee braaikuiken eksperimente is uitgevoer. Eksperiment Een het uit drie behandelings bestaan waarvan die aminosuur-konsentrasie vanaf dag een tussen behandelings verskil het. In Eksperiment Twee het die aminosuur-konsentrasie net in die vier afrondingsdiëte verskil. Liggaamsmassa op 35 dae het die grooste verskil tussen voorspelde- en werklike waardes getoon. Beide voorspelde en werklike innames het in albei eksperimente verhoog soos wat aminosuur-konsentrasie afgeneem het. Voorspelde liggaamsmassa het egter konstant gebly terwyl werklike data 'n afname in liggaamsmassa getoon het. Dit bleik dat die voorspelde toename in innames voldoende was om massa te onderhou terwyl die voëls in werklikheid nie genoeg gekompenseer het nie. Leeson et al., 1996a het tot die gevolgtrekking gekom dat braaikuikens minstens sewe dae benodig om hul voeriname by 'n nuwe spesifikasie aan te pas. So 'n stadige aanpassing kan daartoe lei dat energie- en aminosuur-inname daal indien 'n dieet met laer spesifikasie gevoer. Dit sal daartoe lei dat die kuikens liggaamsmassa verloor. Uit die literatuur simulasies is die volgende afleidings gemaak: 1) Braaikuikens besit die vermoeë om voerinname in die afrondingstyd met minstens 65% te verhoog indien 'n afrondingvoer met laer amiosuur- asook energiekonsentrasie gevoer word. Indien net die energiekonsentrasie verlaag word, sal die inname met sowat 30% verhoog. 2) Die akkurate voorspelling van inname is krities vir die akkurate voorspelling van produksieparameters. 3) Aminosuur-digtheid en DLys:ME speel 'n belangrike rol in die beheer en voorspelling van voerinname by braaikuikens. Die EFG braaikuikenmodel is op suiwer wetenskaplike beginsels geskoei. Die model is omvattend en kan vir 'n wye reeks van omgewings- en bestuurstoestande asook dieet-spesifikasies gebruik word. Die voedingkundige kan die model met vertroue gebruik om met praktiese voerformulering by te staan. Die model kan die formuleerder baie tyd spaar aangesien praktiese eksperimente ingeperk kan word.

Chickens exhibit considerable variation in morphological traits, with some populations having undergone intensive selection for uniqueness and uniformity. These populations are a source of experimental material to study the genetics of morphological traits. An important first step in such studies is to map the genes and the causal mutations that influence these traits. This research focused on gene mapping of 12 morphological traits including 4 intra-feather color patterns (Pattern, Columbian, Melanotic, and mottling), 2 inter-feather color patterns (Blue and chocolate), 2 forms of feathered-legs, polydactyly, dark brown eggshell color, vulture hock, and creeper. Ten backcross and/or F2 populations were designed to produce 1,880 individuals. An additional 339 DNA samples from other populations were included. The procedures for gene mapping were: 1. Pooling of DNA samples of backcross or F2 individuals based on their shared phenotypes, followed by microarray assays for genotyping, a cost-effective initial screen for the candidate genomic regions, 2. Linkage mapping to narrow the range of candidate genes, 3. Sequencing to identify the candidate mutations, 4. Diagnostic tests to confirm the association between the candidate mutation and the phenotype. Of the 12 traits studied, 3 (mottling, Blue, and chocolate) made progress into step 4. Complexities due to genomic context, modifiers, and environmental factors precluded step 4 for the first form of the feathered-leg gene, step 3 for the mapping of Melanotic, and earlier stages for the mapping of Pattern, Columbian, dark brown egg, vulture hock, and the second form of feathered-leg. These findings provide insights of the complexity of how background genome can influence the phenotypic expression of single genes (gene genetic background interactions) and an understanding of cellular and molecular mechanisms involved in morphogenesis.
Ph. D.
Chickens, one of the major protein sources in diets for humans, have a long cultural, sport and religious history since their initial domestication during the neolithic period. Darwin wrote of the importance of variation, which today we see for example in size of body, length of shank, number of toes, distribution of feathers, comb types, and plumage color patterns resulting in a plethora of breeds of chickens that differ in appearance. Some of these traits are "simply" inherited, which in the molecular era facilitates the study of relationships between DNA sequences and phenotypes. This dissertation focuses on identification of differences in DNA sequences among chickens responsible for these "simply" inherited phenotypes. The 12 phenotypes that were studied included 6 plumage color patterns (Pattern, Columbian, Melanotic, mottling, Blue, and chocolate), 2 forms of feathered-legs, polydactyly, dark brown eggshell color, vulture hock, and creeper. Designed were ten 3-generation populations to produce 1,880 chickens. An additional 339 DNA samples from other populations were included. Of the 12 phenotypes, 8 involved genotyping of pooled DNA samples, a cost-effective initial screen to target DNA sequences. This was followed by genotyping individual samples in 5 of the more promising studies. Candidate genes identified as associated with these 5 phenotypes underwent further studies which identified differences in DNA sequences associated with 4 of them (mottling, feathered-leg, Blue, and chocolate). These findings provide insights of how DNA sequences contribute to the phenotypic appearance of animals.

Avian coccidiosis is caused by the intestinal protozoa Eimeria. The parasite's site of infection in the intestine is site specific. Eimeria acervulina mainly affects the duodenum, E. maxima the jejunum, and E. tenella the ceca. Lesions in the intestinal mucosa cause reduced feed efficiency and body weight gain in Eimeria-challenged chickens. My previous studies showed that the growth reduction may be due to changes in expression of digestive enzymes and nutrient transporters in the intestine. This can also lead to diminished intracellular pools of nutrients and inhibit pathogen replication. In this dissertation, further analysis of cellular events was performed. Expression of host defense peptides (HDPs), apoptosis and autophagy related genes were examined in Eimeria challenged broilers. The results showed that upon Eimeria infection, LEAP2 was consistently downregulated in the target tissues, while the avian beta-defensins (AvBDs) showed many variations in expression patterns. Downregulation of LEAP2 may be a mechanism for Eimeria to combat the host defense system, and to promote its survival inside the host cell. The in situ hybridization results showed that LEAP2 was expressed only along the villus in the small intestine and not in the crypt. This is the first time LEAP2 has been localized to epithelial cells of the chicken intestine. Eimeria infection can also induce an anti-apoptotic and anti-autophagy state in the host cells. This condition can be both favorable and unfavorable to parasite survival and replication inside the host cell. A comparison of gene expression between Ross and Eimeria resistant Fayoumi (line M5.1 and M15.2) chickens challenged with Eimeria maxima was conducted. The comparison among different lines of chickens showed differential gene expression patterns in lines with different resistance to Eimeria. The similar body weight reduction indicated that there may not be a significant Eimeria resistant line among the Ross, Fayoumi M5.1 and M15.2 birds. The interaction between Eimeria and the host cell is very complex. Studying the mechanisms behind the changes of gene expression during Eimeria infection may give rise to potential therapeutic targets of coccidiosis.
Ph. D.

La proventriculitis viral transmissible (TVP) és una malaltia infecciosa viral emergent que afecta principalment a les gallines de graella. Es caracteritza per una digestió de l’alimentació deficient, un creixement deficient i una taxa de conversió de l’alimentació deficient, causant pèrdues econòmiques a la indústria avícola. En casos de TVP s’observa l’ampliació, engrossiment, fragilitat i pal·lidesa del proventriculus, juntament amb debilitat i dilatació de l’istme gàstric. Tot i que les lesions greus proventriculars poden ser indicatives de TVP, no són específiques. La malaltia es caracteritza per les seves lesions histològiques: necrosi de cèl·lules oxinticopèptiques, inflamació amb predomini de limfòcits i substitució de l’epiteli glandular per epiteli ductal hiperplàsic. Per tant, l’objectiu principal d’aquesta tesi era determinar la presència de la malaltia i del nou agent viral a les granges avícoles espanyoles i caracteritzar encara més aquest agent viral mitjançant estudis ultraestructurals i tècniques de seqüenciació de propera generació. En el primer estudi, la presència de CPNV en casos clínics de TVP de granges avícoles espanyoles es va avaluar retrospectivament del 1999 al 2019 en teixit proventricular FFPE. L’examen histopatològic, la RT-PCR de CPNV i el genoma de seqüència parcial de casos positius obtinguts mitjançant la seqüència de Sanger es va dur a terme en 42 casos clínics. A més, es va configurar una nova tècnica ISH com a nou mètode per detectar el virus. L’estudi va identificar la presència de CPNV a les granges de pollastres espanyoles des de 1999 com a mínim. A més, deu proventriculi de set casos clínics diferents van ser positius per a CPNV RT-PCR i ISH, i tots ells van mostrar els trets histopatològics característics de TVP (necrosi de l’oxinticopèptic inflamació intersticial de les cèl·lules i de les glàndules). Els estudis filogenètics van demostrar que les seqüències parcials de CPNV espanyoles estaven molt relacionades amb les seqüències CPNV disponibles del Regne Unit i els EUA. El segon estudi d’aquesta tesi tenia com a objectiu identificar, visualitzar i localitzar l’agent causant de TVP mitjançant l’ús de TEM. Es van utilitzar mostres proventriculars de dotze casos clínics diferents. Vuit de les mostres van ser positives per RT-PCR i ISH a CPNV, mentre que les altres tres, tot i que presentaven una lesió brut i microscòpica coherent amb TVP, van ser negatives per a CPNV ISH i RT-PCR. Es van observar virus icosaèdrics de 70 nm, no embolcallats, intranuclears i / o intracitoplasmàtics en quatre mostres. Dues d’aquestes mostres van ser negatives per al CPNV mitjançant mètodes moleculars, mentre que les altres dues van donar resultats positius a les tècniques de RT-PCR i ISH CPNV. Aquests resultats, juntament amb la troballa de virions als nuclis de les cèl·lules infecetd, una troballa que no es sol veure en els virus d’ARN, van plantejar la qüestió de si TVP també podria ser causada per un altre agent viral simultàniament o sense la contribució de CPNV. Per entendre encara més aquesta última hipòtesi, es va fer un tercer estudi per caracteritzar encara més el genoma dels virus implicats en els casos de TVP. Es van estudiar vuit mostres de proventriculi de TVP per NGS i es van trobar seqüències parcials o completes del segment B de CPNV en tots ells, confirmant la implicació d’aquest virus en casos clínics de TVP. No obstant això, en cinc dels casos, es van trobar seqüències parcials d’adenovirus A aviari, en particular els dos casos en què s’havien observat virions intranuclears per TEM. Aquests resultats confirmen la hipòtesi que l’adenovirus A aviari pot estar present en casos clínics de TVP, tot i que el seu paper en el desenvolupament de la malaltia necessita estudis addicionals.
La proventriculitis viral transmisible (TVP) es una enfermedad infecciosa viral emergente que afecta principalmente a los pollos de engorde. Se caracteriza por una digestión deficiente de los alimentos, un crecimiento deficiente y una tasa de conversión de alimentos deficiente, lo que provoca pérdidas económicas para la industria avícola. En los casos de TVP se observa agrandamiento, engrosamiento, fragilidad y palidez del proventrículo, junto con debilidad y dilatación del istmo gástrico. Aunque las lesiones macroscópicas proventriculares podrían ser indicativas de TVP, no son específicas. La enfermedad se caracteriza por sus lesiones histológicas: necrosis de células oxinticopépticas, inflamación con predominio de linfocitos y sustitución del epitelio glandular por epitelio ductal hiperplásico. Por tanto, el objetivo principal de esta tesis fue determinar la presencia de la enfermedad y el nuevo agente viral en las granjas avícolas españolas y caracterizar este agente viral mediante estudios ultraestructurales y técnicas de secuenciación de última generación. En el primer estudio, se evaluó retrospectivamente la presencia de CPNV en casos clínicos de TVP de granjas avícolas españolas desde 1999 hasta 2019 en tejido proventricular FFPE. En 42 casos clínicos se realizó examen histopatológico, CPNV RT-PCR y secuencia parcial del genoma de casos positivos obtenidos mediante secuencia de Sanger. Además, se estableció una nueva técnica de ISH como un nuevo método para detectar el virus. El estudio identificó la presencia de CPNV en las granjas avícolas españolas desde al menos 1999. Además, diez proventrículos de siete casos clínicos diferentes fueron positivos a CPNV RT-PCR e ISH, y todos mostraron los rasgos histopatológicos característicos de TVP (necrosis de oxinticopeptic células e inflamación intersticial de la glándula). Los estudios filogenéticos mostraron que las secuencias parciales de CPNV españolas estaban muy relacionadas con las secuencias de CPNV disponibles en Reino Unido y EE. UU. El segundo estudio de esta tesis tuvo como objetivo identificar, visualizar y localizar el agente causante de TVP mediante el uso de TEM. Se utilizaron muestras proventriculares de doce casos clínicos diferentes. Ocho de las muestras fueron positivas por RT-PCR e ISH a CPNV, mientras que las otras tres, aunque mostraron lesiones macroscópicas y microscópicas compatibles con TVP, fueron negativas a CPNV ISH y RT-PCR. Se observaron virus icosaédricos, de 70 nm, no envueltos, intranucleares y / o intracitoplasma en cuatro muestras. Dos de estas muestras dieron negativo a CPNV por métodos moleculares, mientras que las otras dos dieron resultados positivos a las técnicas de RT-PCR e ISH CPNV. Estos resultados, junto con el hallazgo de viriones en los núcleos de las células infecciosas, un hallazgo que no suele observarse en los virus de ARN, plantearon la cuestión de si la TVP también podría ser causada por otro agente viral simultáneamente o sin la contribución del CPNV. Para comprender aún más esta última hipótesis, se realizó un tercer estudio para caracterizar aún más el genoma de los virus involucrados en los casos de TVP. Se estudiaron por NGS ocho muestras de proventrículos de TVP y en todas se encontraron secuencias parciales o completas del Segmento B de CPNV, confirmando además la participación de este virus en casos clínicos de TVP. Sin embargo, en cinco de los casos, se encontraron secuencias parciales de adenovirus aviar A, en particular los dos casos en los que se habían observado viriones intranucleares mediante TEM. Estos resultados confirman la hipótesis de que el adenovirus A aviar puede estar presente en casos clínicos de TVP, aunque su papel en el desarrollo de la enfermedad requiere más estudios.
Transmissible Viral Proventriculitis (TVP) is an emergent viral infectious disease that affects mainly broiler chickens. It is characterized by impaired feed digestion, poor growth, and poor feed conversion rate, causing economic losses to the poultry industry. Enlargement, thickening, fragility, and paleness of the proventriculus, together with weakness and dilation of gastric isthmus is observed in TVP cases. Although proventricular gross lesions could be indicative of TVP, they are not specific. The disease is characterized by its histologic lesions: necrosis of oxynticopeptic cells, inflammation with a predominance of lymphocytes, and replacement of glandular epithelium by hyperplasic ductal epithelium. Therefore, the main objective of this thesis was to determine the presence of the disease and the new viral agent in Spanish poultry farms and further characterize this viral agent by ultrastructural studies and next generation sequencing techniques. In the first study, the presence of CPNV in TVP clinical cases from Spanish poultry farms was retrospectively evaluated from 1999 to 2019 in FFPE proventricular tissue. Histopathological examination, CPNV RT-PCR, and partial sequence genome of positive cases obtained using Sanger sequence was carried out in 42 clinical cases. In adition, a new ISH technique was set up as a new method to detect the virus. The study identified the presence of CPNV in Spanish chicken farms since at least 1999. Moreover, ten proventriculi from seven different clinical cases were positive to CPNV RT-PCR and ISH, and all of them showed the characteristic histopathological features of TVP (necrosis of oxynticopeptic cells and gland interstitial inflammation). Phylogenetic studies showed that the Spanish CPNV partial sequences were very closely related to the available UK and USA CPNV sequences. The second study of this thesis aimed to identify, visualize, and localize the causative agent of TVP by using TEM. Proventricular samples from twelve different clinical cases were used. Eight of the samples were positive by RT-PCR and ISH to CPNV, while the other three, although showing gross and microscopic lesiosn consistent with TVP, were negative to CPNV ISH and RT-PCR. Icosahedral, 70 nm, non-enveloped, intranuclear and/or intracytoplasm viruses were observed in four samples. Two of these samples were negative to CPNV by molecular methods, while the other two gave positive results to RT-PCR and ISH CPNV techniques. These results, together with the finding of virions in the nuclei of infecetd cells, a finding which is not usually seen in RNA viruses, raised the question whether TVP could also be caused by another viral agent simultaneoulsy or without the contribution fo CPNV. To further undesrtand this last hypothesis, a third study was done to further characterize the genome of the virus/es involved in the TVP cases. Eight TVP proventriculi samples were studied by NGS and partial or complete sequences of CPNV Segment B were found in all of them, furter confirming the involvement of this virus in TVP clinical cases. However, in five of the cases, partial sequences of Avian adenovirus A were found, particularly the two cases where intranuclear virions had been observed by TEM. These results confirm the hypothesis that Avian adenovirus A can be present in TVP clinical cases, although its role in the development of the disease needs further studies.
Universitat Autònoma de Barcelona. Programa de Doctorat en Medicina i Sanitat Animals

Thesis (MScFoodSc)--Stellenbosch University, 2013.
ENGLISH ABSTRACT: Modern consumers are health conscious and are shifting towards more naturally produced products such as free range chicken. Commercial broiler strains are not suitable for free range rearing and an alternative genotype is needed that will serve the South African market with the acceptable meat quality as a broiler. The objective of this study was to investigate the effect of production system (free range and intensive reared) and genotype (Broiler (COBB™), Ross 308 X Potchefstroom Koekoek hybrid and Potchefstroom Koekoek) on chicken meat quality. This was quantified on the morphological, physical (pH, colour, drip and cooking loss, water holding capacity and tenderness), chemical composition (moisture, protein, fat, ash contents and fatty acid profile), sensory quality and consumer preference of various chicken meat portions. The results of this study indicate that genotype had a more pronounced effect than production system on the morphological and growth properties of chicken meat, as well as on the sensory characteristics and consumer preference. The broilers had the best (P ≤ 0.05) feed conversion ratio (FCR), highest average daily gain (ADG) and European production efficiency factor (EPEF), followed by the Hybrid and then the Potchefstroom Koekoek. For each genotype, the free range chickens produced heavier (P ≤ 0.05) live weights than intensively reared chickens. Despite the poorer growth performance and efficiency of the medium growing Hybrid birds, they had less mortality and fewer leg disorders than the broiler. Additional to these factors, the Hybrid Free Range had higher thigh, drumstick and wing yields (P ≤ 0.05) than the broiler. When investigating the correlation between the chemical and sensory data, it was observed that the Hybrid scored significantly higher (P ≤ 0.05) in both flavour and aroma than the Broiler and Koekoek genotypes for both production systems. For colour, pH and polyunsaturated to saturated fatty acid ratio (PUFA:SFA), the effect of production system was more pronounced than the effect of genotype. Rearing chickens in a free range environment increased the PUFA:SFA ratio (P ≤ 0.05), making it beneficial to human health. Free range rearing resulted in lower muscle pHu (P ≤ 0.05), darker (L* value) (P ≤ 0.05), less red and yellow (a* and b* value) (P ≤ 0.05) chicken meat. It also influenced the chemical composition in different carcass portions; for example, a lower fat content in the thigh and higher protein in the breast of the Broiler. Correlation with the sensory results indicated that juiciness, tenderness, chicken aroma and chicken flavour are the main drivers of liking for consumer’s preference towards chicken meat. The consumers predominantly preferred the Hybrid (P ≤ 0.05) in a blind tasting session, but when information was given on the production system of a chicken product, the consumers lean more towards a free range reared product than an intensive reared product. This indicates that consumer perception plays an immense role in consumer decision making. Cluster analysis was also performed to ascertain whether the consumers differed in their degree of liking of the intrinsic character of the respective chicken samples. Three different clusters of consumers were identified: 1) Consumers that prefer free range reared chicken meat, 2) Consumers that prefer intensively reared chicken meat, 3) Consumers that prefer both free range and intensive reared chicken meat. In conclusion, the Hybrid seems to be a viable option for free range production systems in South Africa, without negatively affecting the overall quality of the meat or consumer acceptance.
AFRIKAANSE OPSOMMING: Moderne verbruikers is baie meer gesonheidsbewus en verkies meer natuurlik geproduseerde produkte soos vrylopende (free range) hoenders. Die kommersiële braaikuiken is nie geskik vir vrylopende produksie nie en `n ander genotipe word benodig wat die Suid-Afrikaanse mark sal kan voorsien met aanvaarbare vleiskwaliteit vergelykbaar met dié van die braaikuiken. Die doel van hierdie navorsing was om die effek van produksiestelsel (vrylopend en intensief) en genotipe (braaikuiken (COBB™), Potchefstroom Koekoek en Ross 308 X Potchefstroom Koekoek kruising) op die morfologiese, fisiese (pH, kleur, drip- en kookverlies, waterhouvermoë en taaiheid), chemiese samestelling (vog-, proteïen-, vet-, asinhoud en vetsuurprofiel), sensoriese kwaliteit en verbruikersaanvaarbaarheid van verskeie hoender vleis porsies te bepaal. Hierdie navorsing het getoon dat genotipe `n groter invloed gehad het as produksiestelsel op die groei en morfologiese eienskappe van die hoenders, asook op die sensoriese eienskappe en verbruikersaanvaarbaarheid. Die braaikuiken, gevolg deur die Ross X Koekoek kruising en dan die Koekoek, het die beste (P ≤ 0.05) voeromsetverhouding (FCR), gemiddelde daaglikse toename (GDT) en Europese produksie effektiwiteitsfaktor (EPEF) getoon. Vir elke genotipe het die vrylopende hoenders swaarder (P ≤ 0.05) lewende massa by slag getoon. Ten spyte daarvan dat die Ross X Koekoek kruising swakker groei en effektiwiteitsresultate getoon het, het hulle laer mortaliteite en minder been breuke en beserings as die braaikuiken gehad. Die Ross X Koekoek kruising wat vrylopend groot gemaak is, het ook swaarder dy, boud en vlerkie massa (P ≤ 0.05) as die braaikuiken getoon. Die navorsing het ook getoon dat kleur, pH en die poli-onversadigde tot versadigde vetsuur verhouding (PUFA:SFA) meer beïnvloed is deur die effek van produksiestelsel as genotipe. Die hoenders wat in ʼn vrylopende omgewing grootgemaak is se PUFA:SFA verhouding is hoër as dié van intensiewe boerdery, wat dit voordelig maak vir menslike gesondheid. Vrylopende hoenders se vleis is donkerder (L*) (P ≤ 0.05) en het ook laer rooi, geel (a* en b*) en pH (P ≤ 0.05) waardes getoon. Produksiestelsel effek het ook variërende chemiese waardes in verskillende karkas porsies tot gevolg gehad: ʼn laer vetinhoud is gevind in die dy en ʼn hoër proteïeninhoud in die borsies van die braaikuikens wat vrylopend grootgemaak is. Korrelasies met die sensoriese data het ook getoon dat sappigheid, taaiheid en hoendervleis geur die grootste dryfvere is in verbruikersaanvaarbaarheid. Tydens die verbruikerstoetse waar die verbruikers die gaar hoendervleis blind geproe het, het die verbruikers oor die algemeen meer gehou van die Ross X Koekoek kruising in vergelyking met die ander hoender genotipes (P ≤ 0.05), maar sodra inligting oor die verskillende produksiestelsels gegee is, het die verbruikers aangedui dat hulle hoenders wat vrylopend groot gemaak is, verkies. Dit dui daarop dat persepsies ʼn baie belangrike rol speel in die verbruiker se finale besluitnemingsproses. Statistiese segmentasietegnieke is ook op die data uitgevoer ten einde te bepaal of verbruikers in groepe verdeel kan word wat betref hul voorkeur van die sensoriese of intrinsieke eienskappe van die hoenderprodukte. Drie verskillende groepe is geïdentifiseer, nl. verbruikers wat 1) vrylopende hoender vleis verkies; 2) intensiewe hoender vleis verkies; 3) beide vrylopende en intensiewe hoender vleis verkies. In die lig van bogenoemde resultate wil dit voorkom of kruisteling tussen die gewone braaikuiken en die Potchefstroom Koekoek ʼn moontlike opsie is vir die Suid-Afrikaanse vryloop hoenderbedryf. Hierdeur word daar van vrylopende produksie stelsels gebruik gemaak sonder om die vleiskwaliteit of gebruikers aanvaarbaarheid negatief te beïnvloed.