Relevant bibliographies by topics / Bacteria – Analysis

Academic literature on the topic 'Bacteria – Analysis'

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Published: 4 June 2021
Last updated: 19 February 2022

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Journal articles on the topic "Bacteria – Analysis"

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Kim, Su Yeong, and Dae Yong Yi. "Analysis of the human breast milk microbiome and bacterial extracellular vesicles in healthy mothers." Experimental & Molecular Medicine 52, no. 8 (August 2020): 1288–97. http://dx.doi.org/10.1038/s12276-020-0470-5.

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Abstract The microbiota of human breast milk (HBM) contribute to infant gut colonization; however, whether bacterial extracellular vesicles (EVs) are present in HBM or might contribute to this process remains unknown. In this study, we characterized the HBM microbiota of healthy Korean mothers and measured the key bacteria likely affecting infant gut colonization by analyzing both the microbiota and bacterial EVs. A total of 22 HBM samples were collected from lactating mothers. The DNA of bacteria and bacteria-derived EVs was extracted from each sample. In alpha-diversity analyses, bacterial samples showed higher richness and evenness than bacterial EV samples, and beta-diversity analyses showed significant differences between bacteria and bacterial EVs within identical individual samples. Firmicutes accounted for the largest proportion among the phyla, followed by Proteobacteria, Bacteroidetes, and Actinobacteria, in both bacteria and bacterial EV samples. At the genus level, Streptococcus (25.1%) and Staphylococcus (10.7%) were predominant in bacterial samples, whereas Bacteroides (9.1%), Acinetobacter (6.9%), and Lactobacillaceae(f) (5.5%) were prevalent in bacterial EV samples. Several genera, including Bifidobacterium, were significantly positively correlated between the two samples. This study revealed the diverse bacterial communities in the HBM of healthy lactating mothers, and found that gut-associated genera accounted for a high proportion in bacterial EV samples. Our findings suggest the existence of key bacteria with metabolic activity that are independent of the major bacterial populations that inhabit HBM, and the possibility that EVs derived from these bacteria are involved in the vertical transfer of gut microbiota.
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Kulakov, Leonid A., Morven B. McAlister, Kimberly L. Ogden, Michael J. Larkin, and John F. O'Hanlon. "Analysis of Bacteria Contaminating Ultrapure Water in Industrial Systems." Applied and Environmental Microbiology 68, no. 4 (April 2002): 1548–55. http://dx.doi.org/10.1128/aem.68.4.1548-1555.2002.

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ABSTRACT Bacterial populations inhabiting ultrapure water (UPW) systems were investigated. The analyzed UPW systems included pilot scale, bench scale, and full size UPW plants employed in the semiconductor and other industries. Bacteria present in the polishing loop of the UPW systems were enumerated by both plate counts and epifluorescence microscopy. Assessment of bacterial presence in UPW by epifluorescence microscopy (cyanotolyl tetrazolium chloride [CTC] and DAPI [4′,6′-diamidino-2-phenylindole] staining) showed significantly higher numbers (10 to 100 times more bacterial cells were detected) than that determined by plate counts. A considerable proportion of the bacteria present in UPW (50 to 90%) were cells that did not give a positive signal with CTC stain. Bacteria isolated from the UPW systems were mostly gram negative, and several groups seem to be indigenous for all of the UPW production systems studied. These included Ralstonia pickettii, Bradyrhizobium sp., Pseudomonas saccharophilia, and Stenotrophomonas strains. These bacteria constituted a significant part of the total number of isolated strains (≥20%). Two sets of primers specific to R. pickettii and Bradyrhizobium sp. were designed and successfully used for the detection of the corresponding bacteria in the concentrated UPW samples. Unexpectedly, nifH gene sequences were found in Bradyrhizobium sp. and some P. saccharophilia strains isolated from UPW. The widespread use of nitrogen gas in UPW plants may be associated with the presence of nitrogen-fixing genes in these bacteria.
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Djokic, Lidija, M. Savic, Tanja Narancic, and Branka Vasiljevic. "Metagenomic analysis of soil microbial communities." Archives of Biological Sciences 62, no. 3 (2010): 559–64. http://dx.doi.org/10.2298/abs1003559d.

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Ramonda serbica and Ramonda nathaliae, rare resurrection plants growing in the Balkan Peninsula, produce a high amount of phenolic compounds as a response to stress. The composition and size of bacterial communities in two rhizosphere soil samples of these plants were analyzed using a metagenomic approach. Fluorescent in situ hybridization (FISH) experiments together with DAPI staining showed that the metabolically active bacteria represent only a small fraction, approximately 5%, of total soil bacteria. Using universal bacteria - specific primers 16S rDNA genes were amplified directly from metagenomic DNAs and two libraries were constructed. The Restriction Fragment Length Polymorphism (RLFP) method was used in library screening. Amongst 192 clones, 35 unique operational taxonomic units (OTUs) were determined from the rhizosphere of R. nathaliae, and 13 OTUs out of 80 clones in total from the library of R. serbica. Representative clones from each OTU were sequenced. The majority of sequences from metagenomes showed very little similarity to any cultured bacteria. In conclusion, the bacterial communities in the studied soil samples showed quite poor diversity. .
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Perumal, Balaji, John Andrew Carlson, and Dale Robert Meyer. "A Pathological Analysis of Canaliculitis Concretions: More Than JustActinomyces." Scientifica 2016 (2016): 1–4. http://dx.doi.org/10.1155/2016/6313070.

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Purpose.Canaliculitis is classically associated withActinomycesspecies, which are filamentous bacteria; the purpose of this study was to evaluate the extent to which nonfilamentous bacteria colonize canalicular concretions by using graded histopathological analysis.Methods.This is a series of 16 cases. The percentage of Gram-positive/Gomori’s methenamine silver-positive filamentous bacteria (Actinomyces) versus the total bacteria identified was graded, and the types of bacteria seen were recorded. Nonfilamentous bacteria were categorized based upon Gram stain (positive or negative) and morphology (cocci or rods).Results. There were 11 females and 5 males. Nonfilamentous bacteria were identified in 16 of 16 (100%) specimens and filamentous bacteria were identified in 15 of 16 (94%) specimens. The mean percentage of filamentous bacteria relative to total bacteria was 57%. Regarding the nonfilamentous bacteria present, 69% of specimens had Gram-positive cocci only, 25% had Gram-positive and Gram-negative cocci, and 6% had Gram-positive cocci and Gram-positive rods.Conclusion. In the current study, there was a mix of filamentous and nonfilamentous bacteria in almost all canalicular concretions analyzed. Nonfilamentous bacteria may contribute to the pathogenesis of canaliculitis. In addition, the success of bacterial culture can be variable; therefore, pathological analysis can assist in determining the etiology.
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Tsibakhashvili, N. Ya, L. Mosulishvili, E. Kirkesali, T. Kalabegishvili, S. Kerkenjia, M. V. Frontasyeva, Gh Duca, and I. Zinicovscaia. "Epithermal Neutron Activation Analysis for Bacterial Transformations of Chromium." Chemistry Journal of Moldova 4, no. 2 (December 2009): 8–13. http://dx.doi.org/10.19261/cjm.2009.04(2).18.

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Most powerful primary analytical technique, neutron activation analysis, was applied to study indigenous bacteria, namely, Arthrobacter genera which can be successfully used in detoxification and immobilization of toxic substances. In the present study the effect of Cr(VI) on the elemental content of these bacteria has been examined. The concentrations from 12 to 19 elements such as Na, Al, Cl, K, Fe, Co, Zn, As, Br, Rb, Sr, Sb, Ba, Tb, Th, U were determined in the bacterial cells. The high rate of Cr accumulation in the tested bacterial cells was shown. In bacteria treated with chromate some similarity in the behaviour of the following essential elements − potassium, sodium, chlorine − was observed. Such non-essential elements as Ag, As, Br and U were determined in all bacteria and have to be considered by cells as toxins.
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Vinay, Oraon, Prasad Bhupendra, and Singh Kiran. "16S rDNA-RFLP analysis of phylogenetic tree of Rhizobium bacteria." Indian Journal of Applied Research 3, no. 12 (October 1, 2011): 474–76. http://dx.doi.org/10.15373/2249555x/dec2013/145.

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Bhattacharyya, Neil. "Bacterial Infection in Chronic Rhinosinusitis: A Controlled Paired Analysis." American Journal of Rhinology 19, no. 6 (November 2005): 544–48. http://dx.doi.org/10.1177/194589240501900602.

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Background The aim of this study was to determine if pathogenic bacteria are involved in the pathogenesis of chronic rhinosinusitis (CRS). Methods A consecutive series of adult patients with unilateral sinus disease determined by unilateral radiographic involvement or unilateral purulent secretions was microbiologically studied. Aerobic and anaerobic bacterial and fungal cultures were obtained during endoscopic sinus surgery from purulent secretions or tissue culture. Positive culture rates were compared between the diseased sinus and the contralateral nondiseased (control) sinus to determine if pathogenic bacteria were more commonly recovered from the diseased sinuses. Results Forty-nine adult patients completed the study with appropriate microbiological data. Coagulase-negative staphylococci were the most commonly recovered bacteria followed by Staphylococcus aureus from the diseased side of the sinuses with similar findings for the control sinus. Bacterial species were recovered from 87.8% of the diseased side of the sinuses versus 85.7% from the control sinuses (p = 0.50). Reanalysis with coagulase-negative staphylococci considered as non-pathogen showed a 46.9 and 49.0% positive bacterial culture rate in diseased and control groups, respectively (p = 0.50). No significant difference in positive anaerobic culture rates were identified between groups (59.1% diseased versus 55.1% control, respectively, p = 0.61). Antibiotic resistance rates were no different between bacteria cultured from diseased sinuses versus control (p = 0.115). Conclusion Both aerobic and anaerobic bacterial species may be recovered from both diseased and nondiseased sinuses in patients with CRS. These findings cast some doubt on the exact etiologic role of bacteria in CRS, suggesting other factors or other agents also may be responsible in CRS pathogenesis.
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Kahlisch, L., K. Henne, L. Groebe, J. Draheim, M. G. Höfle, and I. Brettar. "Molecular analysis of the bacterial drinking water community with respect to live/dead status." Water Science and Technology 61, no. 1 (January 1, 2010): 9–14. http://dx.doi.org/10.2166/wst.2010.773.

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The assessment of the physiological state of the bacteria in drinking water is a critical issue, especially with respect to the presence of pathogenic bacteria. Though molecular methods can provide insight into the taxonomic composition of the drinking water microflora, the question if a bacterial species is alive or dead still needs to be addressed. To distinguish live and dead bacteria at the taxonomic level, we combined three methods: i) a staining procedure indicating membrane-injured cells (using SYTO9 and Propidium Iodide) that is considered to distinguish between live and dead cells, ii) Fluorescence Activated Cell Sorting (FACS) of the membrane injured and intact bacteria, and iii) molecular analyses of the RNA extracted from the bacteria before and after sorting to analyse the bacterial community at the species level. By staining and FACS analysis the drinking water bacteria could be separated according to their different membrane integrities, and RNA could be extracted from the live and dead sorted bacterial fractions. 16S rRNA based fingerprints revealed a diverse bacterial community in the drinking water samples with the majority being represented by 31 identified phylotypes. Most of the phylotypes referenced belonged to the phyla Proteobacteria (Alpha-, Beta-, Gamma-), Cyanobacteria and Bacteroidetes, and were mostly related to freshwater bacteria. 90% of the total phylotypes could be recovered after FAC-Sorting; 32% of the phylotypes occurred only in the “live” sorted fraction, 21% only in the “dead” sorted fraction, and 46% occurred in both fractions.
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Carels, Nicolas, Marcial Gumiel, Fabio Faria da Mota, Carlos José de Carvalho Moreira, and Patricia Azambuja. "A Metagenomic Analysis of Bacterial Microbiota in the Digestive Tract of Triatomines." Bioinformatics and Biology Insights 11 (January 1, 2017): 117793221773342. http://dx.doi.org/10.1177/1177932217733422.

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The digestive tract of triatomines (DTT) is an ecological niche favored by microbiota whose enzymatic profile is adapted to the specific substrate availability in this medium. This report describes the molecular enzymatic properties that promote bacterial prominence in the DTT. The microbiota composition was assessed previously based on 16S ribosomal DNA, and whole sequenced genomes of bacteria from the same genera were used to calculate the GC level of rare and prominent bacterial species in the DTT. The enzymatic reactions encoded by coding sequences of both rare and common bacterial species were then compared and revealed key functions explaining why some genera outcompete others in the DTT. Representativeness of DTT microbiota was investigated by shotgun sequencing of DNA extracted from bacteria grown in liquid Luria-Bertani broth (LB) medium. Results showed that GC-rich bacteria outcompete GC-poor bacteria and are the dominant components of the DTT microbiota. In addition, oxidoreductases are the main enzymatic components of these bacteria. In particular, nitrate reductases (anaerobic respiration), oxygenases (catabolism of complex substrates), acetate-CoA ligase (tricarboxylic acid cycle and energy metabolism), and kinase (signaling pathway) were the major enzymatic determinants present together with a large group of minor enzymes including hydrogenases involved in energy and amino acid metabolism. In conclusion, despite their slower growth in liquid LB medium, bacteria from GC-rich genera outcompete the GC-poor bacteria because their specific enzymatic abilities impart a selective advantage in the DTT.
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Crump, Byron C., E. Virginia Armbrust, and John A. Baross. "Phylogenetic Analysis of Particle-Attached and Free-Living Bacterial Communities in the Columbia River, Its Estuary, and the Adjacent Coastal Ocean." Applied and Environmental Microbiology 65, no. 7 (July 1, 1999): 3192–204. http://dx.doi.org/10.1128/aem.65.7.3192-3204.1999.

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ABSTRACT The Columbia River estuary is a dynamic system in which estuarine turbidity maxima trap and extend the residence time of particles and particle-attached bacteria over those of the water and free-living bacteria. Particle-attached bacteria dominate bacterial activity in the estuary and are an important part of the estuarine food web. PCR-amplified 16S rRNA genes from particle-attached and free-living bacteria in the Columbia River, its estuary, and the adjacent coastal ocean were cloned, and 239 partial sequences were determined. A wide diversity was observed at the species level within at least six different bacterial phyla, including most subphyla of the classProteobacteria. In the estuary, most particle-attached bacterial clones (75%) were related to members of the genusCytophaga or of the α, γ, or δ subclass of the classProteobacteria. These same clones, however, were rare in or absent from either the particle-attached or the free-living bacterial communities of the river and the coastal ocean. In contrast, about half (48%) of the free-living estuarine bacterial clones were similar to clones from the river or the coastal ocean. These free-living bacteria were related to groups of cosmopolitan freshwater bacteria (β-proteobacteria, gram-positive bacteria, andVerrucomicrobium spp.) and groups of marine organisms (gram-positive bacteria and α-proteobacteria [SAR11 andRhodobacter spp.]). These results suggest that rapidly growing particle-attached bacteria develop into a uniquely adapted estuarine community and that free-living estuarine bacteria are similar to members of the river and the coastal ocean microbial communities. The high degree of diversity in the estuary is the result of the mixing of bacterial communities from the river, estuary, and coastal ocean.
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Dissertations / Theses on the topic "Bacteria – Analysis"

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Ji, Boyang. "Comparative and Functional Genome Analysis of Magnetotactic Bacteria." Thesis, Aix-Marseille, 2013. http://www.theses.fr/2013AIXM4065.

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Les bactéries magnétotactiques (MTB) appartiennent à différents phyla procaryotes et ont la capacité de synthétiser des magnetosomes (cristaux de magnétite entourés par une membrane). Durant la thèse, nous avons procédé à l’analyse génomique de 2 bactéries magnétotactiques: Magnetospira sp. QH-2 et Magnetococcus MO-1. La synthénie et la correlation génique des gènes impliqués dans la formation des magnétosomes montrent que l'insertion de cet îlot chez QH-2 a eu lieu après la divergence entre les Magnetospirillum sp et Magnetospira sp. L'analyse comparative a mis en évidence trois groupes distincts de MTB : Groupe I, comprenant les souches Magnetospirillum spp. et Magnetospira; Groupe II avec MO-1 et M. marinus MC-1 et le Groupe III, avec D. magneticus RS-1. QH-2 montre aussi une évolution adaptative distincte par comparaison aux souches marines ou d'eau douce. L'analyse comparative des réseaux métaboliques révèle une très grande similitude intra-Groupe et une importante variabilité inter-Groupe. Cela est probablement dû aux enzymes impliqués dans les voies métaboliques anoxiques, qui représentent ainsi la contrainte à une distribution taxonomique large des MTB. Ces enzymes permettent ainsi de prédire le phénotype métabolique nécessaire à la production des magnétosomes. Différentes analyses (des protéines ribosomales au genome entier) indiquent une composition taxonomique chimérique des gènes de MO-1 et MC-1, et peut représenter une nouvelle lignée taxonomique chez les Protéobactéries. J’ai aussi participé à l'analyse des génomes de deux bactéries piezophiles, d’une bactérie photosynthétique pourpre et l’analyse phylogénomique des tyrosine-Kinases bactériennes
Magnetotactic bacteria (MTB) are a diverse group of aquatic prokaryotes, which synthesize membrane-Enclosed magnetic crystals known as magnetosomes. In this thesis, the genome sequences of two marine MTB strains, Magnetospira sp. QH-2 and magneto-Ovoid strain MO-1 were analyzed. The magnetosome gene cluster synteny and mam gene correlation indicate that the insertion of the magnetosome island into QH-2 chromosome occurred after divergence between freshwater and marine magnetospirilla. Comparative genomic analysis revealed three distinct groups of sequenced MTB strains: Group I with Magnetospirillum spp. strains and Magnetospira strain, Group II with MO-1 strain and M. marinus MC-1, and Group III including Desulfovibrio magneticus RS-1. In addition, it shows an adaptive evolution of two marine MTB strains to marine sediments in comparison with closely related freshwater species. Moreover, comparative metabolic network analysis reveals high level of intra-Group similarity and inter-Group variety in MTB. With anoxic network enzymes, potential “MTB” strains are predicted, and are consistent with recently isolated MTB strains. It suggested that the anoxic metabolic network might be one restricted constraint for MTB distribution in bacterial lineages. Interestingly, analyses from ribosomal proteins to the whole MTB genome strongly support a taxonomic chimeric nature of MO-1 and MC-1 genes, and may represent a novel Proteobacteria lineage. Additionally, I also participate to genome analyses of piezophilic Desulfovibrio and Phaeospirillum molischianum strains as well as genome-Wide analysis of bacterial tyrosine kinases
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Köhn, Oliver [Verfasser]. "Statistical analysis of bacteria locomotion / Oliver Köhn." Saarbrücken : Saarländische Universitäts- und Landesbibliothek, 2020. http://d-nb.info/121906873X/34.

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Hill, Susannah Margaret. "Analysis of tellurite resistance in aquatic bacteria." Thesis, University of Liverpool, 1988. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.329467.

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Hitchen, Paul Gareth. "Structural analysis of lipo-oligosaccharides from pathogenic bacteria." Thesis, Imperial College London, 2002. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.268463.

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Tran, Thi thanh tam. "Comparative and functional genome analysis of Acidithiobacillus bacteria." Thesis, Aix-Marseille, 2016. http://www.theses.fr/2016AIXM4060.

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Les bactéries acidophiles du genre Acidithiobacillus joue un rôle important dans les activités industrielles de récupération des métaux au sein des sites miniers. Dans cette thèse, la séquence du génome de la bactérie psychro-tolerante Acidithiobacillus ferrivorans CF27 a été re-séquencée. L’analyse comparative du génome de CF27 et des autres bactéries du genre Acidithiobacillus a permis de montrer: (i) une synthénie conservée entre 2 clusters de tRNAs trouvés dans les génomes de At. ferrivorans CF27 et At. ferrooxidans ATCC 23270, et qui ont contribué à la redondance génique des tRNAs chez ces 2 organismes. Notre analyse in silico à grande échelle de ces clusters de tRNAs au sein des génomes procaryotes a montré que les clusters de tRNAs sont présents dans très peu de phyla bactériens; (ii) la présence d’une importante proportion de gènes spécifiques chez CF27 et SS3, ce qui indique la très grande variabilité du contenu génique dans les génomes d’Acidithiobacillus et ainsi la nature unique de chaque groupe d’espèces. L’expression de ces gènes spécifiques a été confirmée chez CF27 cultivés en présence de Fer et soufre; et (iii) une composition taxonomique chimérique des génomes de la classe des Acidithiobacillia, confirmant ainsi que ce groupe appartient à une classe taxonomique particulière. Ces résultats apporte de nouvelles connaissances sur l’adaptation de CF27 à son environnement, ainsi que la nature chimérique des génomes de la classe taxonomique Acidithiobacillia. J’ai participé au projet ‘Thioredoxine réductase (TR)’ dont l’objectif est de définir la fonction biochimique, la structure moléculaire, ainsi que l’histoire évolutive de TRi, une réductase atypique
The acidophilic Acidithiobacillus bacteria play an important role in industrial biomining operations for metal recovery. In this thesis, the genome sequence of a psychrotolerant Acidithiobacillus ferrivorans CF27 were first refined. The comparative genome analysis between CF27 and the closely related Acidithiobacillus genomes revealed: (i) a syntenic conservation of two tRNA array units which are only present in At. ferrivorans CF27 and At. ferrooxidans ATCC 23270 genomes and mainly contribute to the tRNA gene redundancy in both organisms. Moreover, our large-scale genome survey of the tRNA array units in prokaryotic organisms showed that tRNA arrays appear in few phyla; (ii) a high proportion of species-specific genes in CF27 and SS3 strains indicated the high variability of gene content in Acidithiobacillus genomes and therefore the unique nature of each group of species. Given that mRNA expression of some CF27 specific genes were confirmed in Fe(II)-grown cells and sulfur attached cells in CF27, these results highlighted the functional importance of specific genes for CF27 lifestyle; and (iii) the mosaic taxonomic composition of members of the Acidithiobacillia class, and thus confirmed that this group belongs to a particular taxonomic class, distinct to other proteobacterial groups. Taken together, our results provide insights into At. ferrivorans lifestyle as well as the chimeric genome nature of the Acidithiobacillus organisms. In addition, I also participated to the ‘Thioredoxin reductase’ project which aims to define the biochemical function, molecular structure and evolution of TRi, an atypical thioredoxin reductase
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Fukuyama, Yuto. "Genomic and transcriptional studies on hydrogenogenic carboxydotrophic bacteria." Kyoto University, 2019. http://hdl.handle.net/2433/242689.

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Kyoto University (京都大学)
0048
新制・課程博士
博士(農学)
甲第21812号
農博第2325号
新制||農||1066(附属図書館)
学位論文||H31||N5184(農学部図書室)
京都大学大学院農学研究科応用生物科学専攻
(主査)教授 左子 芳彦, 教授 澤山 茂樹, 准教授 吉田 天士
学位規則第4条第1項該当
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Chan, Yuen-piu. "Taxonomic analysis of a haloacid degrading Burkholderia species MBA4." Click to view the E-thesis via HKUTO, 2005. http://sunzi.lib.hku.hk/hkuto/record/B36096374.

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Chan, Yuen-piu, and 陳源標. "Taxonomic analysis of a haloacid degrading Burkholderia species MBA4." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2005. http://hub.hku.hk/bib/B36096374.

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Hatziioanou, Diane. "Discovery and analysis of novel bacteriocins from gut bacteria." Thesis, University of East Anglia, 2011. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.539358.

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Adams, Curtis W. "Analysis of regulatory systems in two different gram⁻ bacteria /." Thesis, Connect to this title online; UW restricted, 1998. http://hdl.handle.net/1773/11484.

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Books on the topic "Bacteria – Analysis"

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A, Lee H., and Morgan M. R. A, eds. Immunoassays for food-poisoning bacteria and bacterial toxins. London: Chapman & Hall, 1992.

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Maloy, Stanley R. Genetic analysis of pathogenic bacteria: A laboratory manual. Plainview, N.Y: Cold Spring Harbor Laboratory Press, 1996.

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Moir, James W. B. Nitrogen cycling in bacteria: Molecular analysis. Norfolk, UK: Caister Academic Press, 2011.

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The fecal bacteria. Washington, DC: ASM Press, 2011.

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(Firm), Knovel, ed. The fecal bacteria. Washington, DC: ASM Press, 2011.

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Faddin, Jean F. Mac. Biochemical tests for identification of medical bacteria. 3rd ed. Philadelphia: Lippincott Williams & Wilkins, 1999.

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Narasimhan, Ramesh. Developing a bacterial sampling plan: Guidance manual. Denver, Colo: Awwa Research Foundation, 2004.

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Muley, Vijaykumar Yogesh, and Vishal Acharya. Genome-Wide Prediction and Analysis of Protein-Protein Functional Linkages in Bacteria. New York, NY: Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4614-4705-4.

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Cherepova, Nadi͡a Vasileva. Elektronno-mikroskopska enzimot͡sitokhimii͡a pri bakterii. Sofii͡a: Izd-vo na Bŭlgarskata akademii͡a na naukite, 1989.

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Geological Survey (U.S.), Ohio Water Development Authority, and Delphos (Ohio), eds. Quantifying viruses and bacteria in wastewater: Results, interpretation methods, and quality control. Reston, Va: U.S. Dept. of the Interior, U.S. Geological Survey, 2011.

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Book chapters on the topic "Bacteria – Analysis"

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Srivastava, Sheela, and P. S. Srivastava. "Bacteria as Model Systems in Genetic Analysis." In Understanding Bacteria, 223–303. Dordrecht: Springer Netherlands, 2003. http://dx.doi.org/10.1007/978-94-017-0129-7_7.

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Brown, T. A. "Genetic analysis of bacteria." In Genetics: A Molecular Approach, 356–74. Dordrecht: Springer Netherlands, 1992. http://dx.doi.org/10.1007/978-94-011-2312-9_19.

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Gerwig, Gerrit J. "Structural Analysis of Exopolysaccharides from Lactic Acid Bacteria." In Lactic Acid Bacteria, 67–84. New York, NY: Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8907-2_7.

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Cerone, Antonio, and Enrico Marsili. "A Formal Model for the Simulation and Analysis of Early Biofilm Formation." In From Data to Models and Back, 134–51. Cham: Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-030-70650-0_9.

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AbstractBiofilms are structured communities of bacterial cells adherent to a surface. This bacterial state is called sessile.This paper focuses on the modelling of the transition between planktonic and sessile state using Real-time Maude as the modelling language. With more and more bacteria joining the sessile community, the likelihood of producing a biofilm increases. Once the percentage of bacterial cells that adheres to the surface reaches a threshold, which is specific for the considered bacterium species, a permanent biofilm is formed. An important challenge is to predict the time needed for the formation of a biofilm on a specific surface, in order to plan when the material infrastructure that comprises such a surface needs to be cleaned or replaced. We exploit the model-checking features of Real-time Maude to formally prove that a regular cleaning or replacement of the infrastructure prevents the biofilm formation.
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Van de Eynde, H., Y. Van de Peer, and R. De Wachter. "Inferring Eubacterial Phylogeny from SS Ribosomal RNA Structure Analysis." In Green Photosynthetic Bacteria, 217–21. Boston, MA: Springer US, 1988. http://dx.doi.org/10.1007/978-1-4613-1021-1_26.

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Fujimoto, D. K., and A. K. Vidaver. "Analysis of Strain Variation in Xanthomonas Campestris Pv. Phaseoli." In Plant Pathogenic Bacteria, 797. Dordrecht: Springer Netherlands, 1987. http://dx.doi.org/10.1007/978-94-009-3555-6_174.

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Preston, Gail M., David S. Guttman, and Ian Toth. "Genomic Analysis of Plant Pathogenic Bacteria." In Bacterial Pathogenomics, 392–418. Washington, DC, USA: ASM Press, 2014. http://dx.doi.org/10.1128/9781555815530.ch15.

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Sundin, G. W., Janette L. Jacobs, Ane Sesma, and Jesús Murillo. "Phylogenetic Analysis of the pPT23A Plasmid Family of Pseudomonas syringae." In Plant Pathogenic Bacteria, 141–43. Dordrecht: Springer Netherlands, 2001. http://dx.doi.org/10.1007/978-94-010-0003-1_29.

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Wattam, Alice R., Joseph L. Gabbard, Maulik Shukla, and Bruno W. Sobral. "Comparative Genomic Analysis at the PATRIC, A Bioinformatic Resource Center." In Host-Bacteria Interactions, 287–308. New York, NY: Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-1261-2_17.

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Rouvière, P. E., L. C. Mandelco, and C. R. Woese. "Phylogenetic Analysis of Methanogenic Bacteria." In Microbiology and Biochemistry of Strict Anaerobes Involved in Interspecies Hydrogen Transfer, 467. Boston, MA: Springer US, 1990. http://dx.doi.org/10.1007/978-1-4613-0613-9_61.

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Conference papers on the topic "Bacteria – Analysis"

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Bucolo, Maide, Adriano Basile, Luigi Fortuna, and Mattia Frasca. "Motion analysis of flagellar bacteria." In Second International Symposium on Fluctuations and Noise, edited by Derek Abbott, Sergey M. Bezrukov, Andras Der, and Angel Sanchez. SPIE, 2004. http://dx.doi.org/10.1117/12.548626.

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Keasler, Vic, Brian Bennett, and Heather McGinley. "Analysis of Bacterial Kill Versus Corrosion From Use of Common Oilfield Biocides." In 2010 8th International Pipeline Conference. ASMEDC, 2010. http://dx.doi.org/10.1115/ipc2010-31593.

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Bacterial proliferation is a severe problem in many oilfield systems, especially in aging systems with high water cuts. Depending on the types of microorganisms present, they can cause microbiologically influenced corrosion (MIC) or biofouling of filters, membranes, and metal surfaces. Common oilfield bacteria include sulfate-reducing bacteria (SRB) that can generate hydrogen sulfide (H2S) and iron sulfide (FeS) as a by-product (iron sulfide can occur in different structural forms), acid producing bacteria that can secrete organic acids that lower the pH within the microenvironment of a biofilm, as well as general heterotrophic bacteria that are often important in biofilm formation and maintenance, amongst others. To prevent corrosion or biofouling caused by these organisms, biocides are commonly added to the production fluids. Some concern has arisen that common oilfield biocides may be inherently corrosive at high end use concentrations and could cause general corrosion in the assets they are protecting from MIC. Accordingly, it is important to understand the risk of MIC, souring, and biofouling versus general corrosion from the biocides themselves. To examine the killing efficiency of oilfield biocides versus their corrosive potential, laboratory work was undertaken with five biocide products including: Tetrakis (hydroxymethyl) phosphonium sulfate (THPS), glutaraldehyde, glutaraldehyde / alkyldimethylbenzyl ammonium chloride (ADBAC) mixture, 5-chloro-2-methyl-4-isothiazolin-3-one/2-methyl-4-isothiazolin-3-one (CMIT/MIT), and a cocodiamine (quaternary amine). Each biocide was evaluated at four different concentrations ranging from 10–100,000 ppm of product. Killing efficiency was determined via bacterial kill studies, while wheelbox and bubble cell testing examined corrosion rates. Corrosion rates varied quite substantially from one biocide to the next, especially at high concentrations. Some biocides were found to be only mildly corrosive even at high dosages, while other biocides were much more corrosive at high concentrations. In general, it was observed that biocide corrosivity is directly related to the dosage of the biocide, with higher dosages correlating with higher corrosion rates. On the other hand, biocides were shown to be effective at killing common oilfield bacteria at relatively low dosages. This data suggests that biocides can be effective at killing bacteria at concentrations that do not cause significant amounts of general corrosion. Additionally, the common practice of batch treating biocides minimizes contact time between the biocide and the metal surface, which is in turn expected to minimize any corrosion that would otherwise be attributed to the biocides themselves. Taken together, this data would suggest that the benefit of biocide treatment to prevent MIC and biofouling substantially outweighs any potentially negative impact on corrosion.
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Acharya, D. P., G. Panda, S. Mishra, and Y. V. S. Lakshmi. "Bacteria Foraging Based Independent Component Analysis." In International Conference on Computational Intelligence and Multimedia Applications (ICCIMA 2007). IEEE, 2007. http://dx.doi.org/10.1109/iccima.2007.126.

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Abdel Samad, Rim, Zulfa Al Disi, Mohammad Ashfaq, and Nabil Zouari. "The use of Principle Component Analysis and MALDI-TOF MS for the differentiation of mineral forming Virgibacillus and Bacillus species isolated from Sabkhas." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2020. http://dx.doi.org/10.29117/quarfe.2020.0069.

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Occurrence of mineral forming and other bacteria in mats is well demonstrated. However, their high diversity shown by ribotyping was not explained, although it could explain the diversity of formed minerals. Common biomarkers as well as phylogenic relationships are useful tools to clustering the isolates and predict their potential role in the natural niche. In this study, combination of MALDI-TOF MS with PCA was shown a powerful tool to categorize 35 mineral forming bacterial strains isolated from Dohat Fshaikh sabkha, at northwest of Qatar (23 from decaying mats and 12 from living ones). 23 strains from decaying mats belong to Virgibacillus genus as identified by ribotyping and are shown highly involved in formation of protodolomite and a diversity of minerals. They were used as internal references in categorization of sabkha bacteria. Combination of isolation of bacteria on selective mineral forming media, their MALDI TOF MS protein profiling and PCA analysis established their relationship in a phyloproteomic based on protein biomarkers including m/z 4905, 3265, 5240, 6430, 7765, and 9815. PCA analysis clustered the studied strains into 3 major clusters, showing strong correspondence to the 3 phyloproteiomic groups that were established by the dendrogram. Both clustering analysis means have evidently demonstrated a relationship between known Virgibacillus strains and other related bacteria based on profiling of their synthesized proteins. Thus, larger populations of bacteria in mats can be easily screened for their potential to exhibit certain activities, which is of ecological, environmental and biotechnological significance.
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Broeseker, T. A., M. D. P. Boyle, and R. Lottenberg. "PATHOGENIC BACTERIA HAVE HIGH AFFINITY RECEPTORS SPECIFIC FOR PLASMIN." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1644391.

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Binding of the key fibrinolytic enzyme, plasmin, to certain pathogenic group A streptococci was studied. In these experiments the ability of a group A streptococcal strain, 64/14, to bind either 125I-human plasminogen or the same label following activation with urokinase was measured. It was found that this strain bound <10% of the labeled plasminogen but >70% of labeled plasmin. This property distinguishes the plasmin receptor from streptokinase. These bacteria did not express a common serine protease receptor/inhibitor since they failed to bind labeled trypsin or urokinase. Maximal binding of plasmin occurred between pH 6.0 and 8.0 and in the ionic strength range of 50-200 mM salt. The Kd of plasmin binding to bacteria was approximately 10-10 M at pH 7.4 in 150 mM salt. This was determined by a non-linear least squares analysis of equilibrium binding data. Binding was reversibly inhibited by either epsilon aminocaproic acid (I50 of 0.2 mM) or lysine (I50 of 3.0 mM) suggesting the involvement of the high affinity lysine binding site of plasmin in its binding to bacteria. Bacterial bound plasmin retains its enzymatic activity, being capable of cleaving chromogenic substrates and solubilizing a fibrin- clot. The bacterial bound enzyme activity was inhibited by the low molecular weight inhibitors aprotinin and phe-pro-arg chloromethyl ketone but not by alpha-2 plasmin inhibitor. The ability of bacteria to acquire membrane associated proteolytic activity which cannot be physiologically inhibited may contribute to their tissue invasive properties.
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Ali, Muna Jalal, and Rasha H. Al-Rikabi. "Antibiotic and virulence profile of UTIs associated bacteria." In INTERNATIONAL CONFERENCE OF NUMERICAL ANALYSIS AND APPLIED MATHEMATICS ICNAAM 2019. AIP Publishing, 2020. http://dx.doi.org/10.1063/5.0029707.

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Hinz, Brandon J., Karim H. Muci-Küchler, and Pauline M. Smith. "Distribution of Bacteria in Simplified Surrogate Extremities Shot With Small Caliber Projectiles." In ASME 2013 International Mechanical Engineering Congress and Exposition. American Society of Mechanical Engineers, 2013. http://dx.doi.org/10.1115/imece2013-64803.

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Experiments were conducted to determine bacteria distribution trends in wound cavities of simplified surrogate extremities shot using small caliber projectiles. Two different shapes of targets, cylindrical and square, were used in this study. Cylindrical targets are more representative of an extremity but create difficulties while conducting tests due to inconsistent cavity lengths and optical distortions. Square targets, which are not as susceptible to the problems mentioned above, could be used in place of cylindrical ones if their shape does not significantly affect the distribution of bacteria within the wound cavity. Surface contamination of the targets in the experiments was represented using a circular piece of filter paper moistened with a solution with a known amount of Escherichia coli strain K-12. The projectiles used were 11.43-mm (0.45-in) caliber round nose projectiles shot from a commercially available air rifle. The permanent cavities were extracted from the targets and sliced into small, evenly spaced segments and the area surrounding the permanent cavities was removed with a biopsy punch. The radial tears that were made by the formation of the temporary cavity and surround the permanent cavity were removed using a scalpel. The permanent cavity and radial tears for each section were processed and plated on agar plates. Commercial software was used to count the number of colony forming units on each plate and the percentage of the total bacterial colony count per segment was determined. High speed video and motion analysis software was used to qualitatively and quantitatively compare the temporary cavities in the cylindrical and square targets. The data from the experiments showed that the bacteria distribution trends for the cylindrical and square targets were similar even though the maximum openings of the temporary cavity at the entrance and exit locations were higher for the cylindrical ones. For both target shapes, the bacterium was evenly distributed between the permanent cavity and the radial tears in the middle sections of the “wound tracks.” In addition, significantly higher amounts of bacterium were found in the entrance and exit segments compared with the rest of the segments in the “wound tracks”.
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Podbielska, Halina, Igor Buzalewicz, Agnieszka Suchwałko, and Alina Wieliczko. "Bacteria Classification by Means of the Statistical Analysis of Fresnel Diffraction Patterns of Bacteria Colonies." In Biomedical Optics. Washington, D.C.: OSA, 2012. http://dx.doi.org/10.1364/biomed.2012.bsu5a.5.

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Zheng, Zhouyuan, Parth Bansal, and Yumeng Li. "Numerical Study on Antibacterial Effects of Bio-Inspired Nanostructured Surface." In ASME 2020 International Mechanical Engineering Congress and Exposition. American Society of Mechanical Engineers, 2020. http://dx.doi.org/10.1115/imece2020-23594.

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Abstract Natural bactericidal surfaces are found on the wings of cicada and dragonfly that compose of nanopatterns such as nanopillar arrays. Experimental studies have unveiled that the nanopillars can penetrate the bacterial walls or stretch them, resulting in the cell death. This offers an attractive “chemical-free” and wide-spectrum strategy to fight against bacteria-related infections and fouling, especially for implant-associated infections (IAIs). However, what is the fundamental mechanism and key factors governing the bactericidal performance of the nanostructured surface is the critical research questions need to be answered to realize its full potential. In this work, we developed mechanical single cell model of bacteria based on finite element analysis (FEA) to simulate the interactions between different strains of bacteria and the nanostructured surface. The nanostructured surface contains nanopillar arrays, which are made of polymer materials. Different strains of bacteria are simulated by adopting the corresponding geometry and material properties from experimental values. The mechanical responses of the bacteria cell on the nanopillar arrays with various configurations are studied based on estimated stress and strain distributions within the cell.
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Siripornadulsil, Surasak, and Wilailak Siripornadulsil. "Characterization of Cadmium-Resistant Bacteria and Their Application for Cadmium Bioremediation." In ASME 2009 12th International Conference on Environmental Remediation and Radioactive Waste Management. ASMEDC, 2009. http://dx.doi.org/10.1115/icem2009-16072.

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On a global basis, trace-metal pollution is one of the most pervasive environmental problems. It is particularly difficult to prevent or clean up because the metals are toxic in their elemental form and cannot be decomposed. Bioremediation has been shown to be a powerful system for heavy metal pollution clean up and prevention. In this work, we characterized the cadmium (Cd)-resistant bacteria isolated from rice field soil downstream from zinc (Zn) mineralized area which the owners were contaminated at high level of cadmium content in their blood (&gt;10 μgCd/g creatinine). We found that all 24 isolated bacteria tolerated toxic Cd concentrations (2,500 μM). In order to determine whether the Cd toxicity affected the growth of isolated bacteria, we grew the isolated bacterial cells in the absence and presence of toxic concentrations of CdCl2 (500 μM). In the absence of Cd, all isolated bacterial cells grew slightly better than in the presence of toxic concentrations of Cd. In addition, the Cd binding capacity of all isolated bacteria were very high, ranging from 6.38 to 9.38 log[Cd(atom)]/cell when grown in the presence of 500 μM CdCl2. Furthermore, the stability of Cd-bacteria complex of all isolated bacteria was affected by 1mM EDTA. When grown in the presence of 500 μM CdCl2, Cd-resistant isolates S2500-6, -8, -9, -15, -17, -18, -19, and -22 increasingly produced proteins containing cysteine (SH-group) (from 1.3 to 2.2 times) as well as 11 isolates of Cd-resistant bacteria, including S2500-1, -2, -3, -5, -6, -8, -9, -11, -16, -20, and -21, increasingly produced inorganic sulfide (1.5 to 4.7 times). Furthermore, the Sulfur K-edge X-ray absorption near-edge structure (XANES) spectroscopy studies indicated that Cd-resistant isolated S2500-3 precipitated amounts of cadmium sulfide (CdS), when grown in the presence of 500 μM CdCl2. The results suggested that these Cd-resistant bacteria have potential ability to precipitate a toxic soluble CdCl2 as nontoxic insoluble CdS. Interestingly, Cd-resistant bacteria isolated S2500-3, -8, -9,and -20 increased cadmium tolerance of Thai jasmine rice (Kao Hom Mali 105) when grown in the presence of 200 μM CdCl2. These 4 isolates also decreased cadmium concentration accumulation in Kao Hom Mali 105 plant at 61, 9, 6, and 17%, respectively when grown in the presence of 200 μM CdCl2. They were identified by 16S rDNA sequence analysis and classified as Cupriavidus taiwanensis (isolate S2500-3) and Pseudomonas aeruginosa (isolates S2500-8, -9, and -20).
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Reports on the topic "Bacteria – Analysis"

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Jimenez, L. Molecular analysis of deep subsurface bacteria. Office of Scientific and Technical Information (OSTI), November 1989. http://dx.doi.org/10.2172/5291581.

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Eckdahl, Anthony J., and Todd J. Eckdahl. Mutational Analysis of Transcriptional Initiation in Bacteria. Journal of Young Investigators, September 2016. http://dx.doi.org/10.22186/jyi.31.3.1-8.

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Gala, John. Johnson Creek Bacteria TMDL Implementation: Status and Trend Analysis Study. Portland State University, November 2017. http://dx.doi.org/10.15760/mem.11.

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Sadowski, R. A., G. Chen, C. R. Clayton, J. R. Kearns, J. B. Gillow, and A. J. Francis. A Scanning Auger Microprobe analysis of corrosion products associated with sulfate reducing bacteria. Office of Scientific and Technical Information (OSTI), March 1995. http://dx.doi.org/10.2172/86945.

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Zhou, Jizhong, and Zhili He. Deduction and Analysis of the Interacting Stress Response Pathways of Metal/Radionuclide-reducing Bacteria. Office of Scientific and Technical Information (OSTI), February 2010. http://dx.doi.org/10.2172/1098145.

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Wong, Kwong-Kwok. Genetic Analysis of Stress Responses in Soil Bacteria for Enhanced Bioremediation of Mixed Contaminants. Office of Scientific and Technical Information (OSTI), June 2000. http://dx.doi.org/10.2172/827355.

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Wong, Kwong-Kwok. Genetic Analysis of Stress Responses in Soil Bacteria for Enhanced Bioremediation of Mixed Contaminants. Office of Scientific and Technical Information (OSTI), December 2000. http://dx.doi.org/10.2172/827357.

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Wear, Jr., John Edmund. Environmental diagnostic analysis of ground water bacteria and their involvement in utilization of aromatic compounds. Office of Scientific and Technical Information (OSTI), May 1993. http://dx.doi.org/10.2172/10136853.

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Wear, J. E. Jr. Environmental diagnostic analysis of ground water bacteria and their involvement in utilization of aromatic compounds. Office of Scientific and Technical Information (OSTI), May 1993. http://dx.doi.org/10.2172/6726984.

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Logan, Bruce E., and John M. Regan. Isolation and Analysis of Novel Electrochemically Active Bacteria for Enhanced Power Generation in Microbial Fuel Cells. Fort Belvoir, VA: Defense Technical Information Center, March 2009. http://dx.doi.org/10.21236/ada574405.

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