Dissertations / Theses on the topic 'Atmospheric sciences not elsewhere classified'

In today’s world, antimicrobial resistance is one of the biggest global health issues that mankind is facing. This most effective way to ensure a wound does not become infected is through cleanliness and continued disinfection of the wound site. There is a lack of new antimicrobial drugs coming to the market due to economical and clinical reasons, this is evident in Lord O’Neill’s 2016 report and is addressed by Professor Dame Sally Davies in Parliament, (“We have reached a critical point and must act now on a global scale to slow down antimicrobial resistance”2). Prescription drugs have led to this epidemic that was highlighted by O’Neill. The latest report (2016) by O’Neill states, it is critical to improve sanitation and hygiene, refrain from overusing antibiotics in agriculture and the environment as well as introducing rapid diagnostics and vaccines3. This is leading to the need for photodynamic antimicrobial chemotherapy (PACT) that involves the use of a reactive oxygen species (ROS), photosensitiser, and light to cause microbial death. PACT is a treatment for resistant and non-resistant pathogens that is included in the treatment of multidrug resistant infections. The approach is to use novel antimicrobial drugs topically, avoiding systemic photo-toxicity, thus leading itself towards topical infection control. Herein, we report the development of a range of novel photosensitisers based on the second generation photodynamic therapeutic dyes (PDT) that are based on the tricyclic isoalloxazine structure of riboflavin, vitamin B2. Photosensitisers were synthesised using similar strategies to the isoalloxazine for a number of reasons: e.g. photoactivity and capability of degradation. In order to investigate which photosensitisers gave the highest reactive oxygen yield, functional group changes were made on the N-phenyl ring by substituting a range of electron withdrawing/donating substituents at different positions (ortho, meta, para). The free amide moiety was used to attach the photosensitiser to a solid support that would act as proof of principal of a photosensitiser attached to a bandage. These dyes show a phototherapeutic response via a Type I and II mechanism upon illumination by light of a selected wavelength. The mechanisms produce highly toxic oxygen-species, such as radical production via Type I pathway and singlet oxygen generation by Type II, thus causing terminal damage to microbes in a short time period. The synthesised photosensitisers are illuminated using blue light (440 - 490 nm) and white light in order to monitor and compare the singlet oxygen and radical yields generated as they absorb approximately at 440 nm, thus blue light being ideal for irradiation. The outstanding singlet oxygen result generated by compound 12c of 172% and a radical production by 11c of 227% show promising generators of cytotoxic species, resulting in microbial death. The synthesised photosensitisers have been tested against two opportunistic microbes (Gram positive and Gram negative bacteria; Staphylococcus aureus (S. aureus), and Escherichia coli (E.coli). They have proven to be problematic from its presence within the healthcare system especially when found on surgical site infections. From the statistics generated for the National Health Service (NHS) in the UK we can see that 52.4 % of S. aureus, and 43.1 % E.coli originates within the hospital environment. Antimicrobial activity was observed for several compounds under different light regimes on and off the solid support. As a result, the best observed MIC value of 0.25 mM/mL was achieved for S. aureus in darkness and in blue light without the polymer support. Additionally, when these compounds were linked to a polymer support (mimicking a bandage), antimicrobial activity was retained when irradiated using blue light at 1.0 mM/mL. These results show potential towards the next generation of antimicrobial disinfection agents. In time, these compounds could be integrated into the healthcare system for use as a new generation of self- cleaning bandages towards post-operative wound disinfection rather than employing front line antimicrobials. This is a moot subject under review in parliament and former UK prime minister has highlighted the concern. In a statement recently released, he states “If we fail to act, we are looking at an almost unthinkable scenario where antibiotics no longer work and we are cast back into the dark ages of medicine" – David Cameron, UK Prime Minister2.

Stroke is the third leading cause of death in the western world, and the primary cause of adult disability. There is a great need for methods to identify patients at risk of stroke and decide appropriate treatment. The main criterion for identifying patients at risk of stroke is the percentage of the narrowing in the carotid arteries, which lead blood from the heart to the brain, which currently is quantified manually. This project is in collaboration with Blackpool Victoria Hospital and Christies Hospital in Manchester. The aim of this project is to develop software methods to improve computer-assisted carotid artery stenosis measurement based on Magnetic Resonance Images. A methodology is therefore presented, based on 3D geometry extracted from Contract-Enhanced MR Angiograms, to identify and segment the internal carotid arteries for stenosis quantification. The MRA data volume is initially automatically reduced, by locating the carotid arteries and creating two volumes of interest, each including a single set of carotids (either left or right). The artery of interest (Internal Carotid Artery - ICA) is identified in each sub-volume automatically, by tracking the carotid bifurcation and selecting the artery branch with no further arterial branches. The central axis of the ICA is consequently determined by calculating and connecting together the centres of gravity (centroids) of the 2D contours of the carotid in the axial plane. Segmentation of the ICA is carried out, perpendicular to the central axis, by applying adaptive thresholds along the ICA central axis based on local image characteristics. Hence, the cross-sectional area of the segmented ICA is then measured at different points along the vessel. The most stenotic area is identified, and a reference region is manually selected. The degree of stenosis is then quantified based on the reference and stenosed area measurements, according to the NASCET criterion. This provides a fully automated methodology to locate, identify, and measure the internal carotid stenosis. It is the first time that such complete methodology that covers the processing of the MRI data until the stenosis measurement is taken is developed and is fully automatic. The segmentation results are thoroughly evaluated against the manual delineations of two clinical experts (each performed the delineations twice), and against two popular segmentation techniques. The results were found successful and perform better than manual measurements and other current techniques. They present smaller variability than manual measurements and are able to deal with irregularities in the arterial structure, where other computerised techniques fail. The suggested methodologies seem promising and able to improve considerably both current clinical practice and other existing methodologies.

There are currently several evaluation methods suited to children within the Child-Computer Interaction (CCI) community. However, these methods are user based leaving a gap in inspection method suited to children, that is, where children will act as the inspection method evaluators. This research focused on how to design an effective and easy to use inspection method where children will perform the evaluation based on their values. To ensure that the above is met, a user centred approach and a mixed methodology was explored and finally resulted in the creation of the Inspection Method for Children (IMCH) with an accompanying guideline. This six stages method could be used by CCI researchers as a guide to develop similar methods for children, by industries to perform inspection method evaluation with children on technologies designed for children and could be used by designers to gather design criteria for children’s technology. The process undertaken within this research to develop the new method is also novel and could be adapted by new and old researchers when adapting method to suit children. Future work will focus on carrying out evaluation with wider age range of children in the method to ensure suitability of the method for more children. Comparative studies of the method with other usability method to determine the effectiveness of the method and as a refinement process to produce a validated and refined IMCH method.

The use of lipid profiles from the immobilised alga Selenastrum capricornuizim was investigated as a potential indicator of heavy metal pollution in freshwater environments. The toxicity of Cu", Zn 2 and Cd2t on algal growth was determined and the effective concentration inhibiting specific growth rate by 50 % (EC5 0) for each metal was found to be 124 pM Cu, 20 pM Zn and 5.7 pM Cd respectively. The Cu 24 EC50 value for immobilised cells was also shown to be 124 j.tM, suggesting that Cu exhibits similar toxic effects on growth in both free and immobilised cells. Studies of the effects of temperature and heavy metal exposure (Cu21, Zn 2 and Cd2 +) on S. caprzcornutum demonstrated that these factors altered the fatty acid and free sterol composition of free algal cells in batch culture. A shift in temperature from 25°C to 10°C led to an increase in the relative proportion of oleate and decrease in linoleate and parinate (18:4), together with a significant increase in the composition of ergostenol. Exposure to heavy metal ions led to an increase in oleate (with all three metals) and altered relative proportions of linoleate and parinate (changes being metal specific). Metal ion treatment also increased a22 desaturation of chondrillasterol. This characteristic lipid signature when S. capricornutum was exposed to heavy metal ions was significantly different from changes associated with other environmental factors. These changes in lipid composition upon heavy metal treatment were also observed during exposure of S. capricornuiwn to lower metal concentrations typically found in polluted environments. Studies of cells immobilised within alginate beads showed that gel confinement significantly affected the biochemistry and physiology of algal cells, with a reduction in growth rate and final cells numbers. Scanning electron microscopy demonstrated that growth was mainly limited to the bead periphery. Immobilisation altered the lipid of composition of cells as a consequence of alterations in membrane fluidity and membrane disruption. The Cu uptake from solution was greater in immobilised cells than free cells, thus gel confinement did not confer any protection to cells. The characteristic and significant changes within the lipid composition of free cells with Cu treatment were similarly observed in immobilised cells but were only apparent at 124 pM Cu. Thus lipid profiles, especially sterol composition of immobilised algal cells, may potentially be utilised as sensitive and novel indicators of heavy metal pollution in freshwater environments.

Despite improved knowledge and advanced treatments of high-grade gliomas, the overall survival rate of glioma patients remains low due to the recurrences and locations of the tumour. Evidence shows that the existence of a subpopulation of cells - cancer stem cells (CSCs) may be the major obstacle in treating gliomas. CD133 and nestin have been suggested as the markers of CSCs and natural stem cells. The primary focus of this study was to identify CD133+/nestin+ stem-like cells and discover their association with multidrug resistance (MDR) related genes, i.e. multiple drug resistance I (mdrl) gene and anti-apoptotic gene (bcl-2) in human glioma compared to normal brain tissues and cell lines. Glioma and normal astrocyte cell lines have been employed for CD133 isolating purposes to characterise the association with MDR related genotype and phenotype. The chemosensitivity of the isolated CD 133 population was investigated using chemosensitivity assay. Meanwhile, a serum deprivation method was established in this study to enrich and select CD 133+ CSCs in a glioma (GOS-3) cell line. As a secondary focus of this project, the possibility of immortalisation enzyme hTERT being a discriminative masker between normal and cancer brain stem cells and the transcriptional correlation between cd133 and bmi-lIc-myc oncogenes were investigated. For the first time, findings of the current study demonstrated that 1) there was an evident increase of CD133 gene expression in glioma compared to normal brain tissues where the latter expressed low levels of CD133, P-gp and Bcl-2 than glioma tissues, with an exception of nestin expression, 2) serum deprivation enriched CD133 expression and demonstrated a direct coexpression between CD133 and drug resistance in GOS-3 cells, 3) hTERT may not be a discriminative marker for normal and cancer brain stem cells, 4) although there was a strong transcriptional association between bmil and cmyc, there was an inverse transcriptional association between these genes and cd133 in serum deprived glioma cells, suggesting that bmil may not be essential for the maintenance of glioma stem cells, and 5) CD133+ glioma and normal brain cells showed a significantly high resistance towards chemotherapeutic drugs compared to the autologous CD133- cells. In conclusion, an improved understanding of molecules contributing to the maintenance of CSCs may lead to a combined treatment, targeting both CSCs and their protective MDR phenotypes leading eventually to attractive strategies for the treatment of gliomas.

In the mammal, anaesthetics are known to act via two distinct mechanisms, either increasing inhibition via GABAA receptors (eg. Na-thiopentone) or decreasing excitation via NIvIDA receptors (eg. ketamine). The aim of this thesis is to investigate the effects of both increased inhibition and decreased excitation at the synaptic level within an invertebrate model system, something which cannot readily be done in vertebrate systems. This was achieved by carrying out experiments using both the above mentioned anaesthetics on the whole animal, isolated brain and cultured neurons. In invertebrates it has been shown that GABA and Glutamate can be both excitatory and inhibitory, and injection of GABA into Lymnaea has been shown to result in behavioural changes in feeding, locomotion, escape reactions, male mating and respiration. Injection of Na-thiopentone into the whole animal was carried out in this investigation, in order to establish the anaesthetic response of the animal model to this barbiturate. The presence of gamma-aminobutyric acid (GABA) receptors has been demonstrated in a respiratory interneuron (RPeD1) both electrophysiologically and via molecular techniques, however inmiunostaining has proved negative in RPeD1 and follower cells VD2/3 (unidirectional excitatory synapse) and VD4 (mutual inhibitory synapse). This suggests that these neurons are not themselves GABAergic, although this investigation shows the responses of these neurons to bath and direct application of GABA. Na-thiopentone did not reliably anaesthetise Lymnaea upon injection into the sole of the foot, suggesting that Na-thiopentone binds to proteins within the snail, andlor has a low affininty for the GABAA receptor in Lymnaea. Other anaesthetic studies using propofol and ketaniine have also demonstrated a lack of anaesthetic response. RPeD1 hyperpolarised and became quiescent in response to the application of high concentrations of GABA (10 3-104M), however at lower doses (1O 8-1O 5M), no effect was observed (p < 0.05). Under these conditions simultaneous recordings from VD4 showed hyperpolarisation in response to the application of GABA, whereas VD2 and VD3 exhibited excitatory responses. Presynaptic picoinjection of GABA also resulted in hyperpolarisation and quiescence in RJeD1, but the simultaneous response in VD3 was not observed. Postsynaptic application of GABA directly to 'VD2, and VD4 however, resulted in responses similar to those seen in the whole brain. VD2 and 3 also receive input 2, which hyperpolarises RPeD1 and elicits an excitatory EPSP in VD2 and 3 as this is similar to the response observed in this experiment it is possible that the effects of input 2 on RPeD1 and VD2 & 3 are mediated by GABA. As RPeDI does not stain positively for GABA and hyperpolarises in response to the drug, it seems unlikely that the postsynaptie effects are due to presynaptic release of GABA. RPeD1 has been shown to form reciprocal synapses with VD4 both in vivo and in vitro. When perfused with GABA (lmJ'i4), both cells hyperpolarised reversibly. The postsynaptic response could be due to the action of GABA presynaptically inhibiting RPeDI, or directly on postsynaptic GABA receptors. However VD4 forms connections with other cells in the brain such as input 3 which may also have resulted in this inhibitory response. RPeD1 would however have received a simultaneous excitatory input from this interneuron. Attempts were made to establish the nature of the RPeD1JVD4 synapse in these experiments, but no synapses were evident. These experiments therefore confirm the presence of GABA receptors in RPeD1 and suggest theft presence in VD2, and VD4. This investigation confirms the findings of previous studies, that injection and bath perfusion of barbiturates does not lead to responses in Lymnaea comparable to that of the mammal. In addition to it's main target site, ketamine (a frequently used intravenous anaesthetic) has also been shown to act at cholinergic receptors. The effects of ketamine on learning and memory and apoptosis in the mammalian CNS are well recognised. Within the Lymnaea CNS, VD4 and LPeD1 form a unidirectional excitatory cholinergic synapse, and this was chosen to investigate the effects of ketamine on excitatory synaptic transmission, short term potentiation and synapse formation in the invertebrate animal model. Ketamine decreased synaptic transmission between VD4 and LPeD1 in a concentration dependent manner, but did not significantly affect short term synaptic plasticity (pc0.05). While neurite outgrowth remained extensive, actual sprouting was diminished by all doses of ketamine. Cells exhibited extensive veiling, which was not present in control cells. Percentage chemical synapse formation was reduced by all doses of ketamine, and in some cases inappropriate inhibitory chemical synapses were formed. Furthermore acute, clinically relevant levels of ketamine reduce excitatory cholinergic transmission between VD4 and LPeD1, but short term plasticity is unaffected. Nerve regeneration was seriously compromised, and formation of appropriate chemical synapses greatly reduced. This data has serious implications for the clinical - use of ketamine, particularly in pregnant women, children or critical care patients where nerve regeneration and synapse formation are of great importance and long term exposure common practice. In conclusion, this work supports that of other studies which have showed that invertebrates appear to be relatively insensitive to barbiturates, whereas ketamine appears to effect excitation in a manner similar to that in the mammal.

Antiulcer agents, notably inhibitors of gastric acid secretion, have been the most successful category of drugs to be discovered in recent years; and moreover, there are currently four such agents in the world list of top 25 best selling drugs. Histamine H2 antagonists have been the number one selling pharmaceutical product for more than a decade and inhibitors of the parietal cell HIC-ATPase, so called "proton pump inhibitors" (PPI), look set to continue this success. The proposed study was designed to establish the relative efficacy and mechanisms of action of three novel agents using both in vitro and in vivo models. The three compounds namely AG-1749 (Lansoprazole), PD-136450 and transforming growth factor alpha (TGF(x) were studied to evaluate their antisecretory and antiulccr activities. Lansoprazole, the second PPI to be developed for clinical use, is a non-competitive inhibitor of the H1C-ATPase and has recently been launched in a number of countries. PD-136450 is a competitive antagonist of central and peripheral cholecystokinin-B (CCK-B) receptors (gastrin receptor) and it under clinical development as an anxiolytic but which has actions on the stomach and pancreas. Anxiolytic drug is otherwise known as anti-anxiety drugs, which are used to treat anxiety disorders, like depression, panic disorders, phobias and many personality disorders. TOFu is a polypeptide growth factor, which acts at the EGF receptor and displays potent mitogenic and antisecretory activity. The initial study deals with the comparison of the three compounds with omeprazole and ranitidine in terms of their ability to inhibit acid secretion and their activity in a range of experimental ulcer models. Potency, duration of action and activity against a range of stimulants of acid secretion (histamine, pentagastrin and basal) was determined in anaesthetized rat models by establishing dose-response relationships. The compounds represent a spectrum of activities in as much as lansoprazole is a potent, long acting inhibitor, PD-136450 is an orally active but selective inhibitor, while TOFu has a very short duration and is only active after parenteral administration. In a view to find out the mechanism of action of these drugs on gastric acid secretion, isolated gastric glands from rabbits were employed as an in vitro technique using radiolabeled 14C-aminopyrine as a marker. The results show that lansoprazole was the most potent antisecretory agent compared to other two drugs. The second phase of the study deals with the activity of the three compounds against gastric ulcers induced by acid hypersecretion, indomethacin and stress. This study enabled us to assess the extent to which antisecretory activity per se compared with other actions such as wound healing (TGFa) or anxiolytic activity (PD-136450) contribute to ulcer healing. As other workers already established that prostaglandins and nitric oxide are involved in the cytoprotective activity, the present study investigated the influence of prostaglandin and nitric oxide by using indomethacin and L-NAME pretreatment on the cytoprotective activity of lansoprazole, PD-136450 and TGFcz. Moreover, the three drugs were tested for their activities on the mucus and bicarbonate production in the stomach. It was found that lansoprazole and TGFc increased the gastric mucus secretion while PD-136450 did not show any change. Moreover it was evidenced from this study that the protective activity of PD-136450 is associated with the influence of bicarbonate secretion from the pancreas. In conclusion, the results of this study have indicated that lansoprazole, PD- 136450 and TGFct are potent antisecretory and antiulcer agents which have great therapeutic importance.

Mature skeletal muscle fibres can be classified as type I, type IIa, type IIx or type IIb fibres according to the myosin heavy chain (MHC) isoform that they express. More broadly, type I fibres are classified as slow fibres and type IIa, IIx and IIb fibres as fast fibres. However, the phenotype of an adult skeletal muscle fibre is not fixed: it displays plasticity being capable of adapting to changing activity and loading levels by either transition towards a slower phenotype or transition towards a faster phenotype. Overall, the aims of these studies were to further investigate and define the signal transduction pathways implicated in the control of skeletal muscle fibre phenotype. The ability of a fast muscle to undergo a transition towards a slower phenotype in response to chronic low-frequency stimulation (CLFS) was assessed, via metabolic enzyme activity assays and NADH-TR staining, following blockade of the calcineurin signalling pathway. Metabolic enzyme assays and northern blots were employed to assess the changes in enzyme activities and MEC isoform expression levels following blockade of the calcineurin and ERK1/2 signalling pathways in primary cultures of rat myotubes. Differences in the levels of various signal transduction proteins/transcription factors between slow and fast muscle were investigated using western blotting. The nuclear translocation kinetics of NFAT and NF-κB in response to treatment with the calcium ionophore A23187 were investigated in L6 myotubes using immunocytochernistry. Calcineurin blockade using cyclosporin A failed to prevent a decrease in lactate dehydrogenase activity and an increase in NADH-TR staining intensity, both characteristics of a transition towards a slower phenotype, following CLFS of the fast rat tibialis anterior muscle. Blockade of the ERK1/2 pathway in primary cultures of rat myotubes using U0126 significantly decreased MHC Iβ mRNA levels and significantly increased MIHC IIx, MEC IIb and perinatal MHC mRNA levels. Calcineurin blockade significantly decreased MHC Iβ and embryonal mRNA levels and significantly increased MHC IIx mRNA levels. Calcineurin blockade also significantly increased the activities of lactate dehydrogenase and creatine kinase while ERK1/2 blockade significantly increased the activities of lactate dehydrogenase, creatine kinase, hexokinase, malate dehydrogenase and β-hydroxyacyl-CoA deydrogenase. ERK1/2 and NF-κB levels were found to be higher in slow muscle compared to fast muscle while calcineurin and p38α,β levels were higher in fast muscle compared to slow muscle. No nuclear translocation of NF-κB and only limited evidence for NFAT nuclear translocation was seen in L6 myotubes following treatment with A23187. Overall these studies further characterize the roles of the ERK1/2 and calcineurin pathways in the regulation of muscle phenotype suggesting that each pathway controls some, but not all, of the genes that are differentially expressed between slow and fast muscle fibres. Western blotting suggests further signal transduction protein/transcription factor targets, the functions of which may be explored in the future.

Findings presented in this dissertation show that polyunsaturated fatty acids of soybean oil effectively reacted with high voltage atmospheric cold plasma gas species of various gases including hydrogen, nitrogen, and oxygen at room temperature without a catalyst. Hydrogenation, nitration, and epoxidation reactions were observed along with polymerization. Unexpectedly, hydrogen gas was not the primary source of atomic hydrogen observed under these experimental conditions. Rather, it is suggested that water vapor, present as an impurity, supplied hydrogen ions to the hydrogenation reactions. Nitrogen gas modified atmosphere is an electron-rich medium that catalyze reactions. Further investigation is suggested for optimizing the process of oil hydrogenation, as well as for exploring the potential to produce bio-based gels, lubricants, and greases.

Aerosols are solid or liquid particles that span in size from a few nanometers to tens of micrometers. They are important in both outdoor and indoor environments due to their impact on climate and human health. Many aerosol processes of interest to the environment, health, and filtration are strongly size-dependent. Aerosol particle size distributions (PSDs) provide a basis to better understand outdoor and indoor air pollution sources, evaluate human exposure to air pollution, and aerosol deposition in the human respiratory tract and filters in building ventilation systems. Monitoring the temporal evolution of aerosol PSDs enable for characterization of dynamic aerosol transport and transformation processes, such as direct emissions, nucleation, condensation, coagulation, resuspension, deposition, and filtration. This thesis presents three studies on the PSDs of: (i.) urban aerosols in cities around the world in order to identify geographical trends in the shape and magnitude of PSDs and to frame future research needs for PSD observations at a global-scale, (ii.) synthesized salt particles from a novel thermal aerosol generator to evaluate its suitability for air filter testing, and (iii.) indoor biological particulate matter (bioPM) to characterize transient inhalation exposures of infants and adults to resuspended bioPM from carpet dust induced by crawling and walking.

First, this thesis presents the current state-of-knowledge of urban aerosol PSDs by critically analyzing n=793 urban aerosol PSD observations made between 1998 to 2017 in n=125 cities in n=51 countries across the following regions of the world: Africa (AF), Central, South, and Southeast Asia (CSSA), East Asia (EA), Europe (EU), Latin America (LA), North America, Australia, and New Zealand (NAAN), and West Asia (WA). Prominent geographical variations in the shape and magnitude of urban aerosol number and mass PSDs were identified and significant variations in number PSDs were found between cities in EU and NAAN with those in CSSA and EA. Most PSD observations published in the literature are short-term, with only 14% providing data for longer than six months. There is a paucity of PSDs measured in AF, CSSA, LA, and WA, demonstrating the need for long-term aerosol measurements across wide size ranges in many cities around the globe. Inter-region variations in PSDs have important implications for population exposure, driving large differences in the urban aerosol inhaled deposited dose rate received in each region of the human respiratory system. Similarly, inter-region variations in the shape of PSDs impact the penetration of urban aerosols through filters in building ventilation systems, which serve as an important interface between the outdoor and indoor atmospheres. The results of this critical review demonstrate that global initiatives are urgently needed to develop infrastructure for routine and long-term monitoring of urban aerosol PSDs spanning the nucleation to coarse modes.

Second, this thesis evaluates a newly designed commercially available thermal aerosol generator for ageing air filters in building heating, ventilation, and air-conditioning (HVAC) systems. The physical characteristics of the synthesized salt aerosol (NaCl and KCl) under different generator operational conditions were evaluated. The shape of the number and mass PSD output of the thermal aerosol generator are similar to those found in outdoor (urban) and indoor air and can be modulated by varying the rate at which the salt stick is fed into the flame. The morphology of the NaCl and KCl particles varied with size, with compact spherical or cubic structures observed below 100 nm and agglomerates observed above 100 nm. The thermal aerosol generator is a cost-effective technique for rapid ageing of HVAC filters with a PSD that more accurately represents, compared to conventional loading dusts, what filters encounter in real HVAC installations.

Lastly, this thesis characterizes infant and adult inhalation exposures and respiratory tract deposited dose rates of resuspended bioPM from carpets. Chamber experiments were conducted with a robotic crawling infant and an adult performing a walking sequence. Breathing zone (BZ) size distributions of resuspended fluorescent biological aerosol particles (FBAPs), a bioPM proxy, were monitored in real-time. FBAP exposures were highly transient during periods of locomotion. Both crawling and walking delivered a significant number of resuspended FBAPs to the BZ, with concentrations ranging from 0.5-2 cm^-3. Infants and adults are primarily exposed to a unimodal FBAP size distribution between 2 and 6 μm, with infants receiving greater exposures to super-10 μm FBAPs. In just one minute of crawling or walking, 10²-10³ resuspended FBAPs can deposit in the respiratory tract, with an infant receiving much of their respiratory tract deposited dose in their lower airways. Per kg body mass, an infant will receive nearly four times greater respiratory tract deposited dose of resuspended FBAPs compared to an adult.

Methane (CH₄) is the second most powerful greenhouse gas (GHG) behind carbon dioxide (CO₂), and is able to trap a large amount of long-wave radiation, leading to surface warming. Carbon monoxide (CO) plays an important role in controlling the oxidizing capacity of the atmosphere by reacting with OH radicals that affect atmospheric CH₄ dynamics. Terrestrial ecosystems play an important role in determining the amount of these gases into the atmosphere. However, global quantifications of CH₄ emissions from wetlands and its sinks from uplands, and CO exchanges between land and the atmosphere are still fraught with large uncertainties, presenting a big challenge to interpret complex atmospheric CH₄ dynamics in recent decades. In this dissertation, I apply modeling approaches to estimate the global CH₄ and CO exchanges between land ecosystems and the atmosphere and analyze how they respond to contemporary and future climate change.

Firstly, I develop a process-based biogeochemistry model embedded in Terrestrial Ecosystem Model (TEM) to quantify the CO exchange between soils and the atmosphere at the global scale (Chapter 2). Parameterizations were conducted by using the CO in situ data for eleven representative ecosystem types. The model is then extrapolated to global terrestrial ecosystems. Globally soils act as a sink of atmospheric CO. Areas near the equator, Eastern US, Europe and eastern Asia will be the largest sink regions due to their optimum soil moisture and high temperature. The annual global soil net flux of atmospheric CO is primarily controlled by air temperature, soil temperature, SOC and atmospheric CO concentrations, while its monthly variation is mainly determined by air temperature, precipitation, soil temperature and soil moisture.

Secondly, to better quantify the global CH₄ emissions from wetlands and their uncertainties, I revise, parameterize and verify a process-based biogeochemical model for methane for various wetland ecosystems (Chapter 3). The model is then extrapolated to the global scale to quantify the uncertainty induced from four different types of uncertainty sources including parameterization, wetland type distribution, wetland area distribution and meteorological input. Spatially, the northeast US and Amazon are two hotspots of CH₄ emissions, while consumption hotspots are in the eastern US and eastern China. The relationships between both wetland emissions and upland consumption and El Niño and La Niña events are analyzed. This study highlights the need for more in situ methane flux data, more accurate wetland type and area distribution information to better constrain the model uncertainty.

Thirdly, to further constrain the global wetland CH₄ emissions, I develop a predictive model of CH₄ emissions using an artificial neural network (ANN) approach and available field observations of CH₄ fluxes (Chapter 4). Eleven explanatory variables including three transient climate variables (precipitation, air temperature and solar radiation) and eight static soil property variables are considered in developing the ANN models. The models are then extrapolated to the global scale to estimate monthly CH₄ emissions from 1979 to 2099. Significant interannual and seasonal variations of wetland CH₄ emissions exist in the past four decades, and the emissions in this period are most sensitive to variations in solar radiation and air temperature. This study reduced the uncertainty in global CH₄ emissions from wetlands and called for better characterizing variations of wetland areas and water table position and more long-term observations of CH₄ fluxes in tropical regions.

Finally, in order to study a new pathway of CH₄ emissions from palm tree stem, I develop a two-dimensional diffusion model. The model is optimized using field data of methane emissions from palm tree stems (Chapter 5). The model is then extrapolated to Pastaza-Marañón foreland basin (PMFB) in Peru by using a process-based biogeochemical model. To our knowledge, this is among the first efforts to quantify regional CH₄ emissions through this pathway. The estimates can be improved by considering the effects of changes in temperature, precipitation and radiation and using long-period continuous flux observations. Regional and global estimates of CH₄ emissions through this pathway can be further constrained using more accurate palm swamp classification and spatial distribution data of palm trees at the global scale.

Fruits play a necessary role in the human diet, and their cultivation is important to the prosperity of any country worldwide. However, fruit waste generated in large quantities in agricultural value chain is normally used to feed animals or directly disposed to landfill, ending up with low economic value and a heavy environmental burden. Agricultural waste that contains significant amounts of bioactive compounds can be utilized as byproducts and valorized through bioactives recovery. Conventional bioactive compounds extraction includes intensive uses of organic solvents and also has relatively low efficiency. Therefore, an environment-friendly alternative with higher extraction efficiency is needed. Cold plasma can convert gaseous medium to a highly reacting state with low energy cost, generating reactive species that are able to disrupt cell structures as well as modify material surfaces. This study has developed an innovative cold plasma-assisted extraction technology to enhance the recovery of bioactive compounds from fruit processing byproducts. The objectives of this study are to examine the effects of dielectric barrier discharge plasma on fruit pomaces, in terms of (i) surface microstructure and properties, (ii) extraction efficiency of their bioactive compounds, and (iii) bioactives composition and nutritional value of their extracts.

High voltage atmospheric cold plasmas (HVACP) generated with different working gases (air, argon, helium and nitrogen) were applied on tomato pomace (TP). In addition to creating ruptures on TP epidermal cells, HVACP treatments were found to decrease the water contact angles of tomato peels and accelerate the drying of tomato fruits, indicating the formation of more hydrophilic surfaces. Helium and nitrogen plasmas-treated TP showed increased PC extraction yields by 10%, and all HVACP-treated samples exhibited higher AA and changes in their phenolic compositions.

Grape pomace (GP) from red wine production was treated by helium-HVACP for different time periods (5, 10 and 15 min). Similar cell structure disruption and surface hydrophilicity enhancement were observed, and the effects became more significant as treatment extended. HVACP treatment also increased the total phenolic content in GP extracts, by 10.9−22.8%, which contained a higher anthocyanin concentration and showed an improved AA (16.7−34.7%). Furthermore, competitive effects of HVACP treatment on PC extractability enhancement and their degradation were observed.

The results of this study have proved that HVACP-assisted extraction successfully improved the extraction efficiency of bioactive compounds from fruit pomace and enhanced the nutritional quality of their extracts. This novel technology is a promising method for valorizing different agriculture byproducts into functional food ingredients and nutraceuticals with high nutritional values, which thus can bring significant economic benefits to the agricultural, food and nutraceutical industries.

Infant exposure to the microbial and allergenic content of indoor floor dust has been shown to play a significant role in both the development of, and protection against, allergies and asthma later in life. Resuspension of floor dust during infant locomotion induces a vertical transport of particles to the breathing zone, leading to inhalation exposure to a concentrated cloud of coarse (> 1μm) and fine (≤ 1μm) particles. Resuspension, and subsequent exposure, during periods of active infant locomotion is likely influenced by gait parameters. This dependence has been little explored to date and may play a significant role in floor dust resuspension and exposure associated with forms of locomotion specific to infants. This study explores associations between infant locomotion dynamics and floor dust resuspension and exposure in the indoor environment. Infant gait parameters for walking and physiological characteristics expected to influence dust resuspension and exposure were identified, including: contact frequency (steps min^-1), contact area per step (m²), locomotion speed (m s^-1), breathing zone height (cm), and time-resolved locomotion profiles. Gait parameter datasets for standard gait experiments were collected for infants in three age groups: 12, 15, and 19 months-old (m/o). The gait parameters were integrated with an indoor dust resuspension model through a Monte Carlo framework to predict how age-dependent variations in locomotion affect the resuspension mass emission rate (mg h^-1) for five particle size fractions from 0.3 to 10 μm. Eddy diffusivity coefficients (m² s^-1) were estimated for each age group and used in a particle transport model to determine the vertical particle concentration profile above the floor.

Probability density functions of contact frequency, contact area, locomotion speed, breathing zone height, and size-resolved resuspension mass emission rates were determined for infants in each group. Infant standard gait contact frequencies were generally in the range of 100 to 300 steps min^-1 and increased with age, with median values of 186 steps min^-1 for 12 m/o, 207 steps min^-1 for 15 m/o, and 246.2 steps min^-1 for 19 m/o infants. Similarly, locomotion speed increased with age, from 67.3 cm s^-1 at 12 m/o to 118.83 cm s^-1 at 19 m/o, as did the breathing zone height, which varied between 60 and 85 cm. Resuspension mass emission rates increased with both infant age and particle size. A 19 m/o infant will resuspend comparably more particles from the same indoor settled dust deposit compared to a 15 m/o or 12 m/o infant. Age-dependent variations in the resuspension mass emission rate and eddy diffusivity coefficient drove changes in the vertical particle concentration profile within the resuspended particle cloud. For all particle size fractions, there is an average of a 6% increase in the resuspended particle concentration at a height of 1 m from the floor for a 19 m/o compared to a 12 m/o infant. Time-resolved locomotion profiles were obtained for infants in natural gait during free play establish the transient nature of walking-induced particle resuspension and associated exposures for infants, with variable periods of active locomotion, no motion, and impulsive falls. This study demonstrates that floor dust resuspension and exposure can be influenced by the nature of infant locomotion patterns, which vary with age and are distinctly different from those for adults.

For decades there has been interest in understanding early prebiotic Earth, including its atmospheric chemistry. Saturn’s moon Titan is the only other body in our Solar System with an atmosphere thought to resemble that of early Earth’s, and for this reason it has garnered a lot of attention over the years. Much is now known about the smaller molecules present in that atmosphere, starting with the most abundant, N₂ and CH₄, and going up to slightly larger molecules such as cyanoacetylene and benzene. As the molecules get larger, however, so does the gap in knowledge, especially as it pertains to nitriles. This dissertation aims to add to the story of Titan’s nitriles by first characterizing a molecule thought to be the photochemical product of the reaction between cyanoacetylene and benzene, 3-phenyl-2-propyne-nitrile (PPN). The UV spectra of PPN proved immensely interesting due to the strong presence of in-plane and out-of-plane vibrations of b₂ and b₁ symmetry, respectively. This is possibly a result of strong vibronic coupling between several excited electronic states or Coriolis coupling between complementary b₁ and b₂ vibrational levels. The multi-layer extension of the multi-configuration time dependent Hartree (ML-MCTDH) algorithm was used to understand how the excited states and the vibrational levels might interact, and emission and absorption spectra were modeled and compared to the experimental spectra. The second group of molecules studied included the ortho-, meta-, and para-methyl PPN. Strong methyl rotor activity is seen in the m-methyl PPN, with some activity in the p-methyl PPN. The methyl rotor activity in the m-methyl PPN is similar to other meta-substituted toluenes, and allows us to describe the methyl rotor barrier height in both ground and excited electronic state. Additionally, in all three methylated PPNs we see evidence for strong vibronic coupling in the abundance of out-of-plane vibrations, as had been seen in PPN.

Plantation forests are susceptible to many pests, which can reduce the quality and value of the wood products they source. Certain species of the fungal genus Mycosphaerella are a concern in eucalyptus plantations around the world. Mycosphaerella leaf disease (referred to as MLD from here in) can cause significant leaf necrosis, discolouration and defoliation. In Australia severe outbreaks of MLD have been observed in various eucalyptus plantations. The three aspects of MLD research targeted in this Thesis were factors influencing its atmospheric ascospore concentrations, the effect of its symptoms on leaf spectral properties, and the use of remote sensing to detect MLD’s symptom distribution and severity.

Utilizing environmental DNA (eDNA) for the detection of species in the field is a potentially cost-effective and time-saving technology that may be useful in understanding the distribution and abundance of threatened or endangered species such as the Eastern Massasauga (Sistrurus catenatus). I describe the development of an eDNA assay for the species and evaluate its ability to detect eDNA in laboratory and field conditions. In the field samples, I also investigated the potential for abiotic conditions to influence eDNA detection. Species-specific primers and probe were designed to amplify a 152 bp segment of the massasauga COI gene. Target eDNA could be detected in samples containing as little as 100 copies of target DNA/μL. Water samples collected from laboratory housed snakes indicated that eDNA can be detected in water 56 days after massasauga removal. Field samples were taken from crayfish burrows, known overwintering habitat for the species, from four sites that vary in snake use as ascertained by traditional visual surveys. Of the 60 burrows sampled, seven had a positive detection for massasauga eDNA with no difference in detection rate between DNA extracted from burrow water and burrow sediment. Occupancy models fitted to burrow water indicated that larger amounts of total DNA in a sample may increase the probability of detection of a massasauga eDNA. Large confidence intervals in site occupancy (ѱ) and burrow detection (Θ) values suggest that a larger sample size is needed for more reliable occupancy models. Abiotic conditions within crayfish burrows varied among sites but correlation with eDNA detection was not supported. Estimates of qPCR detection within a burrow with eDNA (ρ) suggest that up to 10 qPCR replicates per burrow sample may be necessary. Further studies need to examine eDNA degradation in the field, improve upon the limit of detection, and sample a larger number of sites for eDNA sampling to be a stand-alone survey method for Eastern Massasaugas.