Academic literature on the topic 'Ancestral recombination graphs, phylogenesis, algorithms'

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Journal articles on the topic "Ancestral recombination graphs, phylogenesis, algorithms"

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Wu, Yufeng. "Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms." Journal of Computational Biology 15, no. 7 (2008): 667–84. http://dx.doi.org/10.1089/cmb.2007.0116.

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Cen, Shi, and David A. Rasmussen. "Exploring the accuracy and limits of algorithms for localizing recombination breakpoints." Molecular Biology and Evolution, June 25, 2024. http://dx.doi.org/10.1093/molbev/msae133.

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Abstract Phylogenetic methods are widely used to reconstruct the evolutionary relationships among species and in dividuals. However, recombination can obscure ancestral relationships as individuals may inherit different regions of their genome from different ancestors. It is therefore often necessary to detect recombination events, locate recombination breakpoints and select recombination-free alignments prior to reconstructing phylogenetic trees. While many earlier studies examined the power of different methods to detect recombination, very few have examined the ability of these methods to a
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Dissertations / Theses on the topic "Ancestral recombination graphs, phylogenesis, algorithms"

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CARRIERI, ANNA PAOLA. "Sampling Ancestral Recombination Graphs and Reconstruction of Phylogenetic Trees for Explaining Evolution." Doctoral thesis, Università degli Studi di Milano-Bicocca, 2016. http://hdl.handle.net/10281/102072.

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The aim of the thesis is the development of algorithms to study the evolution of genomic information starting from data produced by Next Generation Sequencing (NGS) technologies. We address the problem of reconstructing evolutionary histories following two research directions which both explore algorithms for the generation (or reconstruction) of ancestral recombination graphs (or phylogenetic trees) modeling the evolution in presence of evolutionary events, such as recombination and Single Nucleotide Polymorphisms (SNPs). The first research direction regards the development of efficient algor
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Books on the topic "Ancestral recombination graphs, phylogenesis, algorithms"

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Gusfield, Dan. ReCombinatorics: The Algorithmics of Ancestral Recombination Graphs and Explicit Phylogenetic Networks. MIT Press, 2014.

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Gusfield, Dan. ReCombinatorics: The Algorithmics of Ancestral Recombination Graphs and Explicit Phylogenetic Networks. MIT Press, 2014.

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Gusfield, Dan. ReCombinatorics: The Algorithmics of Ancestral Recombination Graphs and Explicit Phylogenetic Networks. MIT Press, 2014.

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Gusfield, Dan. ReCombinatorics: The Algorithmics of Ancestral Recombination Graphs and Explicit Phylogenetic Networks. The MIT Press, 2014.

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