Relevant bibliographies by topics / Acidocella

Academic literature on the topic 'Acidocella'

Author: Grafiati
Published: 10 December 2022
Last updated: 28 January 2023

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Journal articles on the topic "Acidocella"

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Kimoto, Ken-ichiro, Tomoko Aizawa, Makoto Urai, Nguyen Bao Ve, Ken-ichiro Suzuki, Mutsuyasu Nakajima, and Michio Sunairi. "Acidocella aluminiidurans sp. nov., an aluminium-tolerant bacterium isolated from Panicum repens grown in a highly acidic swamp in actual acid sulfate soil area of Vietnam." International Journal of Systematic and Evolutionary Microbiology 60, no. 4 (April 1, 2010): 764–68. http://dx.doi.org/10.1099/ijs.0.011569-0.

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An aluminium-tolerant bacterium, strain AL46T, was isolated from a waterweed, Panicum repens, grown in a highly acidic swamp (pH 3) at an actual acid sulfate soil area of Vietnam. Cells were Gram-negative, aerobic, non-spore-forming, non-motile rods (0.3 μm wide and 1.2–1.6 μm long). 16S rRNA gene sequence analysis indicated that strain AL46T belongs to the genus Acidocella, class Alphaproteobacteria. Strain AL46T was related most closely to the type strains of Acidocella facilis and Acidocella aminolytica (99.4 and 97.8 % 16S rRNA gene sequence similarity, respectively). Levels of DNA–DNA relatedness between strain AL46T and the above type strains were 40 %. The results of physiological and biochemical tests allowed the novel strain to be differentiated phenotypically from the two recognized Acidocella species. Data for predominant cellular fatty acids (cyclopropyl C19 : 0 and C18 : 1), major isoprenoid quinone (Q-10) and DNA G+C content (65.6 mol%) were in accordance with those reported for the genus Acidocella. Therefore, strain AL46T is considered to represent a novel species of the genus Acidocella, for which the name Acidocella aluminiidurans sp. nov. is proposed. The type strain is AL46T (=NBRC 104303T =VTCC-D9-1T).
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Yeung, C. William, Monica Woo, Kenneth Lee, and Charles W. Greer. "Characterization of the bacterial community structure of Sydney Tar Ponds sediment." Canadian Journal of Microbiology 57, no. 6 (June 2011): 493–503. http://dx.doi.org/10.1139/w11-032.

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The Sydney Tar Ponds is one of the largest toxic waste sites in Canada. The bacterial diversity and abundance in the Sydney Tar Ponds sediment was examined using a 16S rRNA gene clone library and denaturing gradient gel electrophoresis (DGGE) with four different primer sets. The clone library was grouped into 19 phylotypes that could be divided into five phyla: Proteobacteria (56.9%), Actinobacteria (35%), Acidobacteria (4.9%), Firmicutes (2.4%), and Verrucomicrobia (0.8%). Members of the phyla Actinobacteria (represented mainly by Mycobacterium spp.) and Alphaproteobacteria (represented by Acidocella spp.) comprised the majority of the clone library. This study also revealed that the phylogenetic results obtained from clone library analysis and from DGGE analysis, with all the primer sets, showed some variability. However, similar Mycobacterium spp. and Acidocella spp. were found in all the different DGGE analyses, again suggesting that these two genera are dominant in the Sydney Tar Ponds sediment. In addition, DGGE analysis indicated that primer sets targeting the V3 region produced results that were the most similar to those obtained with the clone library.
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Okibe, Naoko, Masashi Maki, Daisuke Nakayama, and Keiko Sasaki. "Microbial recovery of vanadium by the acidophilic bacterium, Acidocella aromatica." Biotechnology Letters 38, no. 9 (May 26, 2016): 1475–81. http://dx.doi.org/10.1007/s10529-016-2131-2.

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., Ajanta Saha, Samarendra K. Singh ., Anil K. Ghosh ., and Pataki C. Banerjee . "Detection of Insertion Sequences in the Chromosome of an Acidocella Strain." Research Journal of Microbiology 2, no. 10 (October 1, 2007): 756–62. http://dx.doi.org/10.3923/jm.2007.756.762.

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., Rajdeep Chakravarty, Sanjukta Manna ., Anil K. Ghosh ., and Pataki C. Banerjee . "Morphological Changes in an Acidocella Strain in Response to Heavy Metal Stress." Research Journal of Microbiology 2, no. 10 (October 1, 2007): 742–48. http://dx.doi.org/10.3923/jm.2007.742.748.

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6

Jones, Rose M., Sabrina Hedrich, and D. Barrie Johnson. "Acidocella aromatica sp. nov.: an acidophilic heterotrophic alphaproteobacterium with unusual phenotypic traits." Extremophiles 17, no. 5 (July 25, 2013): 841–50. http://dx.doi.org/10.1007/s00792-013-0566-0.

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7

Xu, Zhifen, Hongrui Ma, Areeb Hassan, Chengtao Li, and Xihuai Qiang. "Impact of Non-Metallic Organic Tanning Agents with a Double-Triazine Structure on the Microbial Community Structure in Wastewater." Water 13, no. 17 (September 4, 2021): 2438. http://dx.doi.org/10.3390/w13172438.

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This study examined the correlation between non-metallic organic tanning agents (NOTAs) and wastewater containing double-triazine (bistriazine). Specifically, high-throughput sequencing was used to analyze how the physical and chemical properties of the bistriazine-containing wastewater affected the microbial community. In total, 9995 operating taxonomy units (OTUs) were detected at a similarity level of 97%. According to the taxonomy results and relative bacterial richness, the non-metallic organic tanning agent (NOTA) wastewater communities showed significant differences. Clostridium sensu stricto and Turicibacter bacteria were dominant in NOTA T2, T3, and the blank control (KB) wastewater; Trichococcus and Aeromonas were dominant in NOTA T4; and Pseudomonas was dominant in T2, T4, and the blank control (KB). Thus, the addition of bistriazine ring derivatives altered the composition of the bacterial community. Furthermore, Spearman’s correlation analysis revealed a substantial correlation in the composition of the communities and the physicochemical properties of the wastewater. Acidocella and norank c Cyanobacteria correlated positively with Total Phosphorus (TP) (p ≤ 0.001) and Mycobacterium showed a positively held correlation with pH (p ≤ 0.05). Conversely, norank_f__Elev-16S-1332 indicated a negative correlation with TP, Total Nitrogen (TN), and Total Organic Carbon (TOC) (p ≤ 0.05), whereas Zoogloea correlated negatively with NH3–N, TOC, and TN (p ≤ 0.05). Regarding water quality, a significant correlation between microbial communities and the physicochemical properties of bistriazine wastewater was also observed (p ≤ 0.05). We concluded that Trichococcus, Clostridium sensu stricto, Turicibacter, Pseudomonas, Intestinibacter, Acidocella, Bacillus, and Tolumonas showed a high tolerance for bistriazine wastewater, which could offer insight into its bioremediation.
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Lu, Shipeng, Stefan Gischkat, Marco Reiche, Denise M. Akob, Kevin B. Hallberg, and Kirsten Küsel. "Ecophysiology of Fe-Cycling Bacteria in Acidic Sediments." Applied and Environmental Microbiology 76, no. 24 (October 22, 2010): 8174–83. http://dx.doi.org/10.1128/aem.01931-10.

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ABSTRACT Using a combination of cultivation-dependent and -independent methods, this study aimed to elucidate the diversity of microorganisms involved in iron cycling and to resolve their in situ functional links in sediments of an acidic lignite mine lake. Using six different media with pH values ranging from 2.5 to 4.3, 117 isolates were obtained that grouped into 38 different strains, including 27 putative new species with respect to the closest characterized strains. Among the isolated strains, 22 strains were able to oxidize Fe(II), 34 were able to reduce Fe(III) in schwertmannite, the dominant iron oxide in this lake, and 21 could do both. All isolates falling into the Gammaproteobacteria (an unknown Dyella-like genus and Acidithiobacillus-related strains) were obtained from the top acidic sediment zones (pH 2.8). Firmicutes strains (related to Bacillus and Alicyclobacillus) were only isolated from deep, moderately acidic sediment zones (pH 4 to 5). Of the Alphaproteobacteria, Acidocella-related strains were only isolated from acidic zones, whereas Acidiphilium-related strains were isolated from all sediment depths. Bacterial clone libraries generally supported and complemented these patterns. Geobacter-related clone sequences were only obtained from deep sediment zones, and Geobacter-specific quantitative PCR yielded 8 × 105 gene copy numbers. Isolates related to the Acidobacterium, Acidocella, and Alicyclobacillus genera and to the unknown Dyella-like genus showed a broad pH tolerance, ranging from 2.5 to 5.0, and preferred schwertmannite to goethite for Fe(III) reduction. This study highlighted the variety of acidophilic microorganisms that are responsible for iron cycling in acidic environments, extending the results of recent laboratory-based studies that showed this trait to be widespread among acidophiles.
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Nagarajan, Viji, Hsin-Chi Tsai, Jung-Sheng Chen, Bashir Hussain, Cheng-Wei Fan, Aslia Asif, and Bing-Mu Hsu. "The Evaluation of Bacterial Abundance and Functional Potentials in the Three Major Watersheds, Located in the Hot Spring Zone of the Tatun Volcano Group Basin, Taiwan." Microorganisms 10, no. 3 (February 23, 2022): 500. http://dx.doi.org/10.3390/microorganisms10030500.

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The Tatun Volcanic Group (TVG), located in northern Taiwan, is characterized by acidic hot springs where the outflow of the hot springs may affect the properties of the associated lotic water bodies. We investigated the bacterial diversity and functional profiles of the Peihuang (PHC), HuangGang (HGC), and Nanhuang Creeks (NHC) located in the TVG basin using 16S rRNA gene sequencing coupled with statistical analyses. Water samples were collected from various streams of the creeks for two months of the year. The NHC showed the highest diversity, richness, and a unique number of phyla, which was followed by the HGC. A reduced number of phyla and a lower diversity was noticed in the PHC. The NHC was found to be abundant in the genera Armatimonas, Prosthecobacter, Pirellula, and Bdellovibrio, whereas the HGC was rich in Thiomonas, Acidiphilium, Prevotella, Acidocella, Acidithiobacillus, and Metallibacterium. The PHC was abundant in Thiomonsa, Legionella, Acidocella, and Sulfuriferula. The samples did not show any strong seasonal variations with the bacterial diversity and abundance; however, the relative abundance of each sampling site varied within the sampling months. The iron transport protein- and the sulfur metabolism-related pathways were predicted to be the key functions in all the creeks, whereas the heavy metal-related functions, such as the cobalt/nickel transport protein and the cobalt–zinc–cadmium efflux system were found to be abundant in the HGC and PHC, respectively. The abundance of Bdellovibrio in the NHC, Diplorickettsia in the HGC, and Legionella in the PHC samples indicated a higher anthropogenic impact over the creek water quality. This study provides the data to understand the distinct bacterial community structure, as well as the functional potentials of the three major watersheds, and helps the knowledge of the impact of the physicochemical properties of the TVG hot springs upon the watersheds.
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Okamoto, Rei, Hisaya Kojima, and Manabu Fukui. "Acidocella aquatica sp. nov., a novel acidophilic heterotrophic bacterium isolated from a freshwater lake." International Journal of Systematic and Evolutionary Microbiology 67, no. 11 (November 1, 2017): 4773–76. http://dx.doi.org/10.1099/ijsem.0.002376.

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Book chapters on the topic "Acidocella"

1

Ghosh, S., N. R. Mahapatra, and P. C. Banerjee. "Cloning of metal-resistance conferring genes from an Acidocella strain." In Biohydrometallurgy and the Environment Toward the Mining of the 21st Century - Proceedings of the International Biohydrometallurgy Symposium, 21–28. Elsevier, 1999. http://dx.doi.org/10.1016/s1572-4409(99)80089-3.

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