Journal articles on the topic 'Acidic patch'
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Skrajna, Aleksandra, Dennis Goldfarb, Katarzyna M. Kedziora, Emily M. Cousins, Gavin D. Grant, Cathy J. Spangler, Emily H. Barbour, et al. "Comprehensive nucleosome interactome screen establishes fundamental principles of nucleosome binding." Nucleic Acids Research 48, no. 17 (July 7, 2020): 9415–32. http://dx.doi.org/10.1093/nar/gkaa544.
Full textCucinotta, Christine E., A. Elizabeth Hildreth, Brendan M. McShane, Margaret K. Shirra, and Karen M. Arndt. "The nucleosome acidic patch directly interacts with subunits of the Paf1 and FACT complexes and controls chromatin architecture in vivo." Nucleic Acids Research 47, no. 16 (June 21, 2019): 8410–23. http://dx.doi.org/10.1093/nar/gkz549.
Full textKalashnikova, Anna A., Mary E. Porter-Goff, Uma M. Muthurajan, Karolin Luger, and Jeffrey C. Hansen. "The role of the nucleosome acidic patch in modulating higher order chromatin structure." Journal of The Royal Society Interface 10, no. 82 (May 6, 2013): 20121022. http://dx.doi.org/10.1098/rsif.2012.1022.
Full textOleinikov, Pavel D., Anastasiia S. Fedulova, Grigoriy A. Armeev, Nikita A. Motorin, Lovepreet Singh-Palchevskaia, Anastasiia L. Sivkina, Pavel G. Feskin, et al. "Interactions of Nucleosomes with Acidic Patch-Binding Peptides: A Combined Structural Bioinformatics, Molecular Modeling, Fluorescence Polarization, and Single-Molecule FRET Study." International Journal of Molecular Sciences 24, no. 20 (October 14, 2023): 15194. http://dx.doi.org/10.3390/ijms242015194.
Full textNavarro Negredo, Paloma, James R. Edgar, Antoni G. Wrobel, Nathan R. Zaccai, Robin Antrobus, David J. Owen, and Margaret S. Robinson. "Contribution of the clathrin adaptor AP-1 subunit µ1 to acidic cluster protein sorting." Journal of Cell Biology 216, no. 9 (July 25, 2017): 2927–43. http://dx.doi.org/10.1083/jcb.201602058.
Full textDebelouchina, Galia T., Karola Gerecht, and Tom W. Muir. "Ubiquitin utilizes an acidic surface patch to alter chromatin structure." Nature Chemical Biology 13, no. 1 (November 21, 2016): 105–10. http://dx.doi.org/10.1038/nchembio.2235.
Full textBirrane, Gabriel, Anne P. Beigneux, Brian Dwyer, Bettina Strack-Logue, Kristian Kølby Kristensen, Omar L. Francone, Loren G. Fong, et al. "Structure of the lipoprotein lipase–GPIHBP1 complex that mediates plasma triglyceride hydrolysis." Proceedings of the National Academy of Sciences 116, no. 5 (December 17, 2018): 1723–32. http://dx.doi.org/10.1073/pnas.1817984116.
Full textBatchelor, Lucinda K., Louis De Falco, Paul J. Dyson, and Curtis A. Davey. "Viral peptide conjugates for metal-warhead delivery to chromatin." RSC Advances 14, no. 13 (2024): 8718–25. http://dx.doi.org/10.1039/d4ra01617c.
Full textCROWLEY, Peter B., David M. HUNTER, Katsuko SATO, William McFARLANE, and Christopher DENNISON. "The parsley plastocyanin-turnip cytochrome f complex: a structurally distorted but kinetically functional acidic patch." Biochemical Journal 378, no. 1 (February 15, 2004): 45–51. http://dx.doi.org/10.1042/bj20031423.
Full textHaneburger, Ina, Andreas Eichinger, Arne Skerra, and Kirsten Jung. "New Insights into the Signaling Mechanism of the pH-responsive, Membrane-integrated Transcriptional Activator CadC of Escherichia coli." Journal of Biological Chemistry 286, no. 12 (January 6, 2011): 10681–89. http://dx.doi.org/10.1074/jbc.m110.196923.
Full textGuiney, Evan L., Till Klecker, and Scott D. Emr. "Identification of the endocytic sorting signal recognized by the Art1-Rsp5 ubiquitin ligase complex." Molecular Biology of the Cell 27, no. 25 (December 15, 2016): 4043–54. http://dx.doi.org/10.1091/mbc.e16-08-0570.
Full textNakabayashi, Yu, and Masayuki Seki. "Functional Analyses of an Evolutionarily Conserved Acidic Patch on the Nucleosome." Biological and Pharmaceutical Bulletin 46, no. 11 (November 1, 2023): 1619–24. http://dx.doi.org/10.1248/bpb.b23-00480.
Full textKujirai, Tomoya, Christian Zierhut, Yoshimasa Takizawa, Ryan Kim, Lumi Negishi, Nobuki Uruma, Seiya Hirai, Hironori Funabiki, and Hitoshi Kurumizaka. "Structural basis for the inhibition of cGAS by nucleosomes." Science 370, no. 6515 (September 10, 2020): 455–58. http://dx.doi.org/10.1126/science.abd0237.
Full textHo, Cheng-Han, Yoshimasa Takizawa, Wataru Kobayashi, Yasuhiro Arimura, Hiroshi Kimura, and Hitoshi Kurumizaka. "Structural basis of nucleosomal histone H4 lysine 20 methylation by SET8 methyltransferase." Life Science Alliance 4, no. 4 (February 11, 2021): e202000919. http://dx.doi.org/10.26508/lsa.202000919.
Full textLesbats, Paul, Erik Serrao, Daniel P. Maskell, Valerie E. Pye, Nicola O’Reilly, Dirk Lindemann, Alan N. Engelman, and Peter Cherepanov. "Structural basis for spumavirus GAG tethering to chromatin." Proceedings of the National Academy of Sciences 114, no. 21 (May 10, 2017): 5509–14. http://dx.doi.org/10.1073/pnas.1621159114.
Full textGallego, Laura D., Medini Ghodgaonkar Steger, Anton A. Polyansky, Tobias Schubert, Bojan Zagrovic, Ning Zheng, Tim Clausen, Franz Herzog, and Alwin Köhler. "Structural mechanism for the recognition and ubiquitination of a single nucleosome residue by Rad6–Bre1." Proceedings of the National Academy of Sciences 113, no. 38 (September 6, 2016): 10553–58. http://dx.doi.org/10.1073/pnas.1606863113.
Full textDao, Hai T., Barbara E. Dul, Geoffrey P. Dann, Glen P. Liszczak, and Tom W. Muir. "A basic motif anchoring ISWI to nucleosome acidic patch regulates nucleosome spacing." Nature Chemical Biology 16, no. 2 (December 9, 2019): 134–42. http://dx.doi.org/10.1038/s41589-019-0413-4.
Full textSato, Katsuko, Takamitsu Kohzuma, and Christopher Dennison. "Pseudospecificity of the Acidic Patch of Plastocyanin for the Interaction with Cytochromef." Journal of the American Chemical Society 126, no. 10 (March 2004): 3028–29. http://dx.doi.org/10.1021/ja038188k.
Full textBortoluzzi, Alessio, Anastasia Amato, Xavier Lucas, Manuel Blank, and Alessio Ciulli. "Structural basis of molecular recognition of helical histone H3 tail by PHD finger domains." Biochemical Journal 474, no. 10 (May 4, 2017): 1633–51. http://dx.doi.org/10.1042/bcj20161053.
Full textZhu, Michael X. "A well-known potassium channel plays a critical role in lysosomes." Journal of Cell Biology 216, no. 6 (May 16, 2017): 1513–15. http://dx.doi.org/10.1083/jcb.201704017.
Full textLehmann, Laura C., Luka Bacic, Graeme Hewitt, Klaus Brackmann, Anton Sabantsev, Guillaume Gaullier, Sofia Pytharopoulou, et al. "Mechanistic Insights into Regulation of the ALC1 Remodeler by the Nucleosome Acidic Patch." Cell Reports 33, no. 12 (December 2020): 108529. http://dx.doi.org/10.1016/j.celrep.2020.108529.
Full textWong, Won Fen, Kuan Ping Ang, Gautam Sethi, and Chung Yeng Looi. "Recent Advancement of Medical Patch for Transdermal Drug Delivery." Medicina 59, no. 4 (April 17, 2023): 778. http://dx.doi.org/10.3390/medicina59040778.
Full textMcBride, Matthew J., Nazar Mashtalir, Evan B. Winter, Hai T. Dao, Martin Filipovski, Andrew R. D’Avino, Hyuk-Soo Seo, et al. "The nucleosome acidic patch and H2A ubiquitination underlie mSWI/SNF recruitment in synovial sarcoma." Nature Structural & Molecular Biology 27, no. 9 (August 3, 2020): 836–45. http://dx.doi.org/10.1038/s41594-020-0466-9.
Full textSato, Shoko, Yoshimasa Takizawa, Fumika Hoshikawa, Mariko Dacher, Hiroki Tanaka, Hiroaki Tachiwana, Tomoya Kujirai, et al. "Cryo-EM structure of the nucleosome core particle containing Giardia lamblia histones." Nucleic Acids Research 49, no. 15 (August 5, 2021): 8934–46. http://dx.doi.org/10.1093/nar/gkab644.
Full textDhar, Surbhi, Ozge Gursoy-Yuzugullu, Ramya Parasuram, and Brendan D. Price. "The tale of a tail: histone H4 acetylation and the repair of DNA breaks." Philosophical Transactions of the Royal Society B: Biological Sciences 372, no. 1731 (August 28, 2017): 20160284. http://dx.doi.org/10.1098/rstb.2016.0284.
Full textUbbink, M., X. S. Gong, J. C. Gray, and D. S. Bendall. "Protein:protein interactions studied by NMR: does cytochrome c bind to plastocyanin on its acidic patch?" Journal of Inorganic Biochemistry 59, no. 2-3 (August 1995): 282. http://dx.doi.org/10.1016/0162-0134(95)97385-4.
Full textSubramanian, Vidya, Aprotim Mazumder, Lauren E. Surface, Vincent L. Butty, Paul A. Fields, Allison Alwan, Lillian Torrey, et al. "H2A.Z Acidic Patch Couples Chromatin Dynamics to Regulation of Gene Expression Programs during ESC Differentiation." PLoS Genetics 9, no. 8 (August 22, 2013): e1003725. http://dx.doi.org/10.1371/journal.pgen.1003725.
Full textShaytan, Alexey, Grigoriy A. Armeev, Pavel D. Oleinikov, Nikita A. Motorin, Lavprit Singh-Palchevskaya, Anastasiia L. Sivkina, Pavel G. Feskin, et al. "Interactions of nucleosomes with acidic patch binding peptides: Combining structural analysis, MD simulations, and experiments." Biophysical Journal 123, no. 3 (February 2024): 3a. http://dx.doi.org/10.1016/j.bpj.2023.11.150.
Full textWu, Yinsheng, Haoshen Xue, Fei Liu, Xinyue Wang, Ling Chen, Maoshen Chen, Bor-Sen Chiou, Xinghu Zhou, Xue Jiao, and Fang Zhong. "Improving stability of phycocyanin under acidic conditions by surface patch binding induced complexation with gelatin." Food Hydrocolloids 161 (April 2025): 110876. http://dx.doi.org/10.1016/j.foodhyd.2024.110876.
Full textEvlanenkov, Konstantin K., Maxim V. Nikolaev, Natalia N. Potapieva, Konstantin V. Bolshakov, and Denis B. Tikhonov. "Probing the Proton-Gated ASIC Channels Using Tetraalkylammonium Ions." Biomolecules 13, no. 11 (November 8, 2023): 1631. http://dx.doi.org/10.3390/biom13111631.
Full textMerchant, Mark, Felix F. Vajdos, Mark Ultsch, Henry R. Maun, Ulrich Wendt, Jennifer Cannon, William Desmarais, Robert A. Lazarus, Abraham M. de Vos, and Frederic J. de Sauvage. "Suppressor of Fused Regulates Gli Activity through a Dual Binding Mechanism." Molecular and Cellular Biology 24, no. 19 (October 1, 2004): 8627–41. http://dx.doi.org/10.1128/mcb.24.19.8627-8641.2004.
Full textGuce, Abigail, Sarah Mortimer, Elizabeth Mellins, Lars Karlsson, and Lawrence Stern. "Structural basis of HLA-DO inhibition of HLA-DM catalyzed peptide exchange on MHC class II (100.53)." Journal of Immunology 186, no. 1_Supplement (April 1, 2011): 100.53. http://dx.doi.org/10.4049/jimmunol.186.supp.100.53.
Full textCucinotta, Christine E., Alexandria N. Young, Kristin M. Klucevsek, and Karen M. Arndt. "The Nucleosome Acidic Patch Regulates the H2B K123 Monoubiquitylation Cascade and Transcription Elongation in Saccharomyces cerevisiae." PLOS Genetics 11, no. 8 (August 4, 2015): e1005420. http://dx.doi.org/10.1371/journal.pgen.1005420.
Full textValencia, Alfredo M., Clayton K. Collings, Hai T. Dao, Roodolph St. Pierre, Yung-Chih Cheng, Junwei Huang, Zhen-Yu Sun, et al. "Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling." Cell 179, no. 6 (November 2019): 1342–56. http://dx.doi.org/10.1016/j.cell.2019.10.044.
Full textLeung, Justin W., Poonam Agarwal, Marella D. Canny, Fade Gong, Aaron D. Robison, Ilya J. Finkelstein, Daniel Durocher, and Kyle M. Miller. "Nucleosome Acidic Patch Promotes RNF168- and RING1B/BMI1-Dependent H2AX and H2A Ubiquitination and DNA Damage Signaling." PLoS Genetics 10, no. 3 (March 6, 2014): e1004178. http://dx.doi.org/10.1371/journal.pgen.1004178.
Full textYu, Y., N. N. Jiménez-Vargas, C. D. Lopez Lopez, J. O. Jaramillo Polanco, N. W. Bunnett, and S. Vanner. "A213 A NOVEL PH-SENSITIVE OPIOID ANALGESIC THAT IS SELECTIVELY ACTIVATED IN ACIDIC INFLAMMATORY ENVIRONMENTS." Journal of the Canadian Association of Gastroenterology 3, Supplement_1 (February 2020): 85–87. http://dx.doi.org/10.1093/jcag/gwz047.212.
Full textHodges, Amelia J., Lisa M. Gloss, and John J. Wyrick. "Residues in the Nucleosome Acidic Patch Regulate Histone Occupancy and Are Important for FACT Binding in Saccharomyces cerevisiae." Genetics 206, no. 3 (May 3, 2017): 1339–48. http://dx.doi.org/10.1534/genetics.117.201939.
Full textChen, Qinming, Renliang Yang, Nikolay Korolev, Chuan Fa Liu, and Lars Nordenskiöld. "Regulation of Nucleosome Stacking and Chromatin Compaction by the Histone H4 N-Terminal Tail–H2A Acidic Patch Interaction." Journal of Molecular Biology 429, no. 13 (June 2017): 2075–92. http://dx.doi.org/10.1016/j.jmb.2017.03.016.
Full textYakushiji, Fumika, Aoi Ishikawa, Akira Katsuyama, and Satoshi Ichikawa. "Development of cyclic peptide derivatives from the N-terminal region of LANA for targeting the nucleosome acidic patch." Bioorganic & Medicinal Chemistry Letters 30, no. 2 (January 2020): 126839. http://dx.doi.org/10.1016/j.bmcl.2019.126839.
Full textPathak, Prasad, and Stephen Whalen. "Using Geospatial Techniques to Analyze Landscape Factors Controlling Ionic Composition of Arctic Lakes, Toolik Lake Region, Alaska." International Journal of Applied Geospatial Research 3, no. 3 (July 2012): 37–57. http://dx.doi.org/10.4018/jagr.2012070103.
Full textMiller, Gregory J., Stanley D. Dunn, and Eric H. Ball. "Interaction of the N- and C-terminal Domains of Vinculin." Journal of Biological Chemistry 276, no. 15 (December 21, 2000): 11729–34. http://dx.doi.org/10.1074/jbc.m008646200.
Full textGeorgiev, Yordan N., Manol H. Ognyanov, Hiroaki Kiyohara, Tsvetelina G. Batsalova, Balik M. Dzhambazov, Milan Ciz, Petko N. Denev, et al. "Acidic polysaccharide complexes from purslane, silver linden and lavender stimulate Peyer’s patch immune cells through innate and adaptive mechanisms." International Journal of Biological Macromolecules 105 (December 2017): 730–40. http://dx.doi.org/10.1016/j.ijbiomac.2017.07.095.
Full textAl Hanbali, Othman A., Haji Muhammad Shoaib Khan, Muhammad Sarfraz, Mosab Arafat, Shakeel Ijaz, and Abdul Hameed. "Transdermal patches: Design and current approaches to painless drug delivery." Acta Pharmaceutica 69, no. 2 (June 1, 2019): 197–215. http://dx.doi.org/10.2478/acph-2019-0016.
Full textMarcianò, G., and D. T. Huang. "Structure of the human histone chaperone FACT Spt16 N-terminal domain." Acta Crystallographica Section F Structural Biology Communications 72, no. 2 (January 22, 2016): 121–28. http://dx.doi.org/10.1107/s2053230x15024565.
Full textBociąg, Katarzyna. "The impact of acidic organie Matter on the diversity of underwater vegetation in soft water lakes." Acta Societatis Botanicorum Poloniae 72, no. 3 (2011): 221–29. http://dx.doi.org/10.5586/asbp.2003.029.
Full textHuang, Ren-Qi, and Glenn H. Dillon. "Effect of Extracellular pH on GABA-Activated Current in Rat Recombinant Receptors and Thin Hypothalamic Slices." Journal of Neurophysiology 82, no. 3 (September 1, 1999): 1233–43. http://dx.doi.org/10.1152/jn.1999.82.3.1233.
Full textZeilhofer, H. U., D. Swandulla, P. W. Reeh, and M. Kress. "Ca2+ permeability of the sustained proton-induced cation current in adult rat dorsal root ganglion neurons." Journal of Neurophysiology 76, no. 5 (November 1, 1996): 2834–40. http://dx.doi.org/10.1152/jn.1996.76.5.2834.
Full textLo, Stanley M., Kyle A. McElroy, and Nicole J. Francis. "Chromatin Modification by PSC Occurs at One PSC per Nucleosome and Does Not Require the Acidic Patch of Histone H2A." PLoS ONE 7, no. 10 (October 11, 2012): e47162. http://dx.doi.org/10.1371/journal.pone.0047162.
Full textMcNitt, Dudley H., Soo Jeon Choi, Douglas R. Keene, Livingston Van De Water, Flavia Squeglia, Rita Berisio, and Slawomir Lukomski. "Surface-exposed loops and an acidic patch in the Scl1 protein of group AStreptococcusenable Scl1 binding to wound-associated fibronectin." Journal of Biological Chemistry 293, no. 20 (April 2, 2018): 7796–810. http://dx.doi.org/10.1074/jbc.ra118.002250.
Full textYe, Youpi, Hao Wu, Kangjing Chen, Cedric R. Clapier, Naveen Verma, Wenhao Zhang, Haiteng Deng, Bradley R. Cairns, Ning Gao, and Zhucheng Chen. "Structure of the RSC complex bound to the nucleosome." Science 366, no. 6467 (October 31, 2019): 838–43. http://dx.doi.org/10.1126/science.aay0033.
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