Journal articles on the topic 'Ab initio prediction'
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Hardin, Corey, Taras V. Pogorelov, and Zaida Luthey-Schulten. "Ab initio protein structure prediction." Current Opinion in Structural Biology 12, no. 2 (April 2002): 176–81. http://dx.doi.org/10.1016/s0959-440x(02)00306-8.
Full textDerreumaux, Philippe. "Ab initio polypeptide structure prediction." Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta) 104, no. 1 (May 12, 2000): 1–6. http://dx.doi.org/10.1007/s002149900095.
Full textLeusen, Frank J. J. "Ab initio prediction of polymorphs." Journal of Crystal Growth 166, no. 1-4 (September 1996): 900–903. http://dx.doi.org/10.1016/0022-0248(96)00099-1.
Full textPopelier, Paul. "pKa prediction from ab initio calculations." Research Outreach, no. 109 (August 30, 2019): 90–93. http://dx.doi.org/10.32907/ro-109-9093.
Full textvan Eijck, B. P. "Ab Initio Prediction of Crystal Structures." Acta Crystallographica Section A Foundations of Crystallography 56, s1 (August 25, 2000): s3. http://dx.doi.org/10.1107/s0108767300021188.
Full textShang, Bo, Lan-Feng Yuan, Xiao Cheng Zeng, and Jinlong Yang. "Ab Initio Prediction of Amorphous B84." Journal of Physical Chemistry A 114, no. 6 (February 18, 2010): 2245–49. http://dx.doi.org/10.1021/jp907976y.
Full textWeinreich, Jan, Dominik Lemm, Guido Falk von Rudorff, and O. Anatole von Lilienfeld. "Ab initio machine learning of phase space averages." Journal of Chemical Physics 157, no. 2 (July 14, 2022): 024303. http://dx.doi.org/10.1063/5.0095674.
Full textNishimura, T., S. Nakamura, and K. Shimizu. "Application of ab initio prediction of protein structures." Seibutsu Butsuri 43, supplement (2003): S33. http://dx.doi.org/10.2142/biophys.43.s33_5.
Full textGdanitz, Robert J. "Ab initio prediction of molecular crystal structures." Current Opinion in Solid State and Materials Science 3, no. 4 (August 1998): 414–18. http://dx.doi.org/10.1016/s1359-0286(98)80054-5.
Full textStanke, M., O. Keller, I. Gunduz, A. Hayes, S. Waack, and B. Morgenstern. "AUGUSTUS: ab initio prediction of alternative transcripts." Nucleic Acids Research 34, Web Server (July 1, 2006): W435—W439. http://dx.doi.org/10.1093/nar/gkl200.
Full textDerreumaux, Philippe. "ChemInform Abstract: Ab initio Polypeptide Structure Prediction." ChemInform 31, no. 49 (December 5, 2000): no. http://dx.doi.org/10.1002/chin.200049293.
Full textPierri, Ciro Leonardo, Anna De Grassi, and Antonio Turi. "Lattices for ab initio protein structure prediction." Proteins: Structure, Function, and Bioinformatics 73, no. 2 (April 23, 2008): 351–61. http://dx.doi.org/10.1002/prot.22070.
Full textQuintas-Sánchez, Ernesto, and Richard Dawes. "Spectroscopy and Scattering Studies Using Interpolated Ab Initio Potentials." Annual Review of Physical Chemistry 72, no. 1 (April 20, 2021): 399–421. http://dx.doi.org/10.1146/annurev-physchem-090519-051837.
Full textTITOV, IGOR I., and PAVEL S. VOROZHEYKIN. "AB INITIO HUMAN miRNA AND PRE-miRNA PREDICTION." Journal of Bioinformatics and Computational Biology 11, no. 06 (December 2013): 1343009. http://dx.doi.org/10.1142/s0219720013430099.
Full textVangaveti, Sweta, Thom Vreven, Yang Zhang, and Zhiping Weng. "Integrating ab initio and template-based algorithms for protein–protein complex structure prediction." Bioinformatics 36, no. 3 (August 8, 2019): 751–57. http://dx.doi.org/10.1093/bioinformatics/btz623.
Full textZhou, Hongyi, and Jeffrey Skolnick. "Ab Initio Protein Structure Prediction Using Chunk-TASSER." Biophysical Journal 93, no. 5 (September 2007): 1510–18. http://dx.doi.org/10.1529/biophysj.107.109959.
Full textBonneau, Richard, Ingo Ruczinski, Jerry Tsai, and David Baker. "Contact order and ab initio protein structure prediction." Protein Science 11, no. 8 (August 2002): 1937–44. http://dx.doi.org/10.1110/ps.3790102.
Full textBonneau, Richard, and David Baker. "Ab Initio Protein Structure Prediction: Progress and Prospects." Annual Review of Biophysics and Biomolecular Structure 30, no. 1 (June 2001): 173–89. http://dx.doi.org/10.1146/annurev.biophys.30.1.173.
Full textDubey, Sandhya Parasnath, N. Gopalakrishna Kini, M. Sathish Kumar, and S. Balaji. "Ab initio protein structure prediction using GPU computing." Perspectives in Science 8 (September 2016): 645–47. http://dx.doi.org/10.1016/j.pisc.2016.06.046.
Full textDarby, James P., Mihails Arhangelskis, Athanassios D. Katsenis, Joseph M. Marrett, Tomislav Friščić, and Andrew J. Morris. "Ab Initio Prediction of Metal-Organic Framework Structures." Chemistry of Materials 32, no. 13 (June 2, 2020): 5835–44. http://dx.doi.org/10.1021/acs.chemmater.0c01737.
Full textSrinivasan, Rajgopal, and George D. Rose. "Ab initio prediction of protein structure using LINUS." Proteins: Structure, Function, and Genetics 47, no. 4 (May 2, 2002): 489–95. http://dx.doi.org/10.1002/prot.10103.
Full textKlepeis, J. L., and C. A. Floudas. "Ab initio prediction of helical segments in polypeptides." Journal of Computational Chemistry 23, no. 2 (December 20, 2001): 245–66. http://dx.doi.org/10.1002/jcc.10002.
Full textKaramertzanis, Panagiotis G., and Constantinos C. Pantelides. "Ab initio crystal structure prediction?I. Rigid molecules." Journal of Computational Chemistry 26, no. 3 (2004): 304–24. http://dx.doi.org/10.1002/jcc.20165.
Full textPugh, William J., and Jonathan Hadgraft. "Ab initio prediction of human skin permeability coefficients." International Journal of Pharmaceutics 103, no. 2 (March 1994): 163–78. http://dx.doi.org/10.1016/0378-5173(94)90097-3.
Full textShidong, Chu, Li Yingxia, Song Ni, and Guan Huashi. "Ab initio prediction of 29Si-NMR chemical shifts." Journal of Ocean University of Qingdao 1, no. 1 (April 2002): 63–65. http://dx.doi.org/10.1007/s11802-002-0033-5.
Full textYuan, Xin, Yu Shao, and Christopher Bystroff. "Ab Initio Protein Structure Prediction Using Pathway Models." Comparative and Functional Genomics 4, no. 4 (2003): 397–401. http://dx.doi.org/10.1002/cfg.305.
Full textMegantara, Sandra, Mutakin Mutakin, and Jutti Levita. "PREDICTION OF LOG P AND SPECTRUM OF QUERCETINE, GLUCOSAMINE, AND ANDROGRAPHOLIDE AND ITS CORRELATION WITH LABORATORY ANALYSIS." International Journal of Pharmacy and Pharmaceutical Sciences 8, no. 11 (October 28, 2016): 33. http://dx.doi.org/10.22159/ijpps.2016v8i11.9101.
Full textŠob, Mojmír, A. Kroupa, J. Pavlů, and J. Vřeštál. "Application of Ab Initio Electronic Structure Calculations in Construction of Phase Diagrams of Metallic Systems with Complex Phases." Solid State Phenomena 150 (January 2009): 1–28. http://dx.doi.org/10.4028/www.scientific.net/ssp.150.1.
Full textPrakoso, Nurcahyo Iman, Lukman Hakim, and Nuri Hidayati. "Molecular Modeling of An Analog Of Curcumin Compounds Pentagamavunon-0 (PGV-0) And Pentagamavunon-1 (PGV-1) Through Computational Chemistry Methods Ab-Initio HF/4-31G." Chemical 3, no. 1 (December 31, 2017): 28–39. http://dx.doi.org/10.20885/ijcr.vol2.iss1.art4.
Full textBarua, Harsh, Anilkumar Gunnam, Balvant Yadav, Ashwini Nangia, and Nalini R. Shastri. "An ab initio molecular dynamics method for cocrystal prediction: validation of the approach." CrystEngComm 21, no. 47 (2019): 7233–48. http://dx.doi.org/10.1039/c9ce01436e.
Full textXia, Qiong, Qi Xu, Bin Xu, and Lin Yi. "Ab initio prediction of thermoelectric performance of monolayer BiSbTe3." Journal of Solid State Chemistry 296 (April 2021): 121963. http://dx.doi.org/10.1016/j.jssc.2021.121963.
Full textGao, Daquan, and Donald E. Williams. "Molecular packing groups and ab initio crystal-structure prediction." Acta Crystallographica Section A Foundations of Crystallography 55, no. 4 (July 1, 1999): 621–27. http://dx.doi.org/10.1107/s0108767398016134.
Full textCaputo, Riccarda, and Adem Tekin. "Ab-initio crystal structure prediction. A case study: NaBH4." Journal of Solid State Chemistry 184, no. 7 (July 2011): 1622–30. http://dx.doi.org/10.1016/j.jssc.2011.05.006.
Full textZheng, Ming-Jie, Izabela Szlufarska, and Dane Morgan. "Ab initio prediction of threshold displacement energies in ZrC." Journal of Nuclear Materials 471 (April 2016): 214–19. http://dx.doi.org/10.1016/j.jnucmat.2015.08.053.
Full textDerreumaux, Philippe. "Ab initio prediction of polypeptide structure from its sequence." Computer Physics Communications 121-122 (September 1999): 139–40. http://dx.doi.org/10.1016/s0010-4655(99)00299-4.
Full textPulay, Peter, Geza Fogarasi, Xuefeng Zhou, and Patterson W. Taylor. "Ab initio prediction of vibrational spectra: A database approach." Vibrational Spectroscopy 1, no. 2 (December 1990): 159–65. http://dx.doi.org/10.1016/0924-2031(90)80030-8.
Full textWong, Adrian T., and George B. Bacskay. "Ab initio prediction of the vibrational frequencies of N2S." Chemical Physics Letters 217, no. 1-2 (January 1994): 17–23. http://dx.doi.org/10.1016/0009-2614(93)e1351-g.
Full textYousef, Mohamad, Tamer Abdelkader, and Khaled El-Bahnasy. "Performance comparison of ab initio protein structure prediction methods." Ain Shams Engineering Journal 10, no. 4 (December 2019): 713–19. http://dx.doi.org/10.1016/j.asej.2019.03.004.
Full textFischer, Gad, and John P. Maier. "Ab initio prediction of the spectra of carbon cumulenes." Chemical Physics 223, no. 2-3 (November 1997): 149–58. http://dx.doi.org/10.1016/s0301-0104(97)00220-6.
Full textUlmschneider, Jakob. "Ab-Initio Prediction of Antimicrobial Peptides Channels in Membranes." Biophysical Journal 114, no. 3 (February 2018): 377a. http://dx.doi.org/10.1016/j.bpj.2017.11.2086.
Full textKromann, Jimmy C., Frej Larsen, Hadeel Moustafa, and Jan H. Jensen. "Prediction of pKa values using the PM6 semiempirical method." PeerJ 4 (August 11, 2016): e2335. http://dx.doi.org/10.7717/peerj.2335.
Full textZagorac, J., D. Zagorac, M. Rosić, J. C. Schön, and B. Matović. "Structure prediction of aluminum nitride combining data mining and quantum mechanics." CrystEngComm 19, no. 35 (2017): 5259–68. http://dx.doi.org/10.1039/c7ce01039g.
Full textEscribano, Rafael, Pedro C. Gómez, Belén Maté, Germán Molpeceres, and Emilio Artacho. "Prediction of the near-IR spectra of ices by ab initio molecular dynamics." Physical Chemistry Chemical Physics 21, no. 18 (2019): 9433–40. http://dx.doi.org/10.1039/c9cp00857h.
Full textCarletta, A., J. Dubois, A. Tilborg, and J. Wouters. "Solid-state investigation on a new dimorphic substituted N-salicylidene compound: insights into its thermochromic behaviour." CrystEngComm 17, no. 18 (2015): 3509–18. http://dx.doi.org/10.1039/c5ce00283d.
Full textLiu, J. B., R. F. Zhang, and B. X. Liu. "Comparative study of nonequilibrium phase of A3B and AB3 types in the Ni–Mo system by first principles and thermodynamic calculations." Journal of Materials Research 17, no. 10 (October 2002): 2720–26. http://dx.doi.org/10.1557/jmr.2002.0393.
Full textMoran, Robert F., David McKay, Chris J. Pickard, Andrew J. Berry, John M. Griffin, and Sharon E. Ashbrook. "Hunting for hydrogen: random structure searching and prediction of NMR parameters of hydrous wadsleyite." Physical Chemistry Chemical Physics 18, no. 15 (2016): 10173–81. http://dx.doi.org/10.1039/c6cp01529h.
Full textHan, Yanqiang, Hongyuan Luo, Qianqian Lu, Zeying Liu, Jinyun Liu, Jiarui Zhang, Zhiyun Wei, and Jinjin Li. "Quantum Mechanical-Based Stability Evaluation of Crystal Structures for HIV-Targeted Drug Cabotegravir." Molecules 26, no. 23 (November 26, 2021): 7178. http://dx.doi.org/10.3390/molecules26237178.
Full textJouyban, Abolghasem. "Review of the Cosolvency Models for Predicting Drug Solubility in Solvent Mixtures: An Update." Journal of Pharmacy & Pharmaceutical Sciences 22 (September 23, 2019): 466–85. http://dx.doi.org/10.18433/jpps30611.
Full textSiqueira, Lucas, and Sandra Venske. "Ab Initio Protein Structure Prediction Using Evolutionary Approach: A Survey." Revista de Informática Teórica e Aplicada 28, no. 2 (August 29, 2021): 11–24. http://dx.doi.org/10.22456/2175-2745.111993.
Full textYamauchi, Kunihiko, Tamio Oguchi, and Silvia Picozzi. "Ab-initio Prediction of Magnetoelectricity in Infinite-Layer CaFeO2and MgFeO2." Journal of the Physical Society of Japan 83, no. 9 (September 15, 2014): 094712. http://dx.doi.org/10.7566/jpsj.83.094712.
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