Academic literature on the topic '060299 Ecology not elsewhere classified'

Abstract We conducted a phytosociological study of the communities hosting the rare and endangered fern Adiantum capillus-veneris in the foothills of the Julian Alps, in Karst and in Istria. Based on a comparison with similar communities elsewhere in the southern Alps (northern Italy) we classified most of the recorded stands into the syntaxa Eucladio-Adiantetum eucladietosum and -cratoneuretosum commutati. Releves from the southern Julian Alps, located in comparatively slightly colder and moister local climate and the dolomite bedrock are classified into the new subassociation -hymenostylietosum recurvirostri subass. nova. Stands with the abundant occurrence of the liverwort Conocephalum conicum, are classified in to the new subassociation -conocephaletosum conici subass. nova. Stands in conglomerate rock shelters along the Soča at Solkan are classified into the new association Phyteumato columnae-Adiantetum ass. nova, a community of transitional character between the classes Adiantetea capilli-veneris and Asplenietea trichomanis.

Four deep-sea ascidian species collected during the KAVIENG 2014 expedition in Papua New Guinea are described, including additional characteristics not reported previously. Fimbrora calsubia is classified within the family Ascidiidae, Dicopia fimbriata and Octacnemus bythius within Octacnemidae, and Culeolus recumbens within Pyuridae. Anatomical observations confirmed previous descriptions for these four species collected elsewhere. Here, we describe additional morphological features for these species and provide the first barcode DNA sequences (based on a fragment of the mitochondrial gene Cytochrome Oxidase I) for D. fimbriata and C. recumbens.

E. covertus is found on bark and leaves of the grey mangrove Avicennia marina, H. foliorum is found on leaves and H. popeiana is found on bark. 7655 barnacles were collected from two sites at Woolooware Bay from winter 1987 to summer 1989. Reproductive and external features in E. covertus differed depending on the substratum on which it lived; reproductive output was greater on leaves than on bark. The genus Hexaminius has been classified elsewhere as two species on the basis of external features and reproductive differences of adults, larval development and larval setation; however, the adults were living on different substrata. A detailed study of larval and juvenile stages of Hexaminius in the field showed no differences in external features until juveniles were one month old and no differences in the time taken to rear cyprid larvae. This suggests that Hexaminius should not continue to be divided into two species.

In 1929-1930, Stig Schenström and J.D. Curtis established an experiment to study thinning dynamics of Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) on southern Vancouver Island, British Columbia. As a subcomponent of the experiment, the coarse woody debris (CWD) from the previous stand were mapped and the decay condition classified on five permanent plots. These scaled drawings and classifications were updated in 1945-1947 and 1995-1996. This unique 65-year period of CWD observation confirms that observations of CWD volume loss on Vancouver Island are similar to elsewhere in the Pacific Northwest. The simple exponential decay rate constant was 0.022 ·year-1 based on volume of primarily Douglas-fir on the five plots. The decay rate constant by large-end diameter was 0.067 ·year-1 for logs <= 20 cm, 0.056 ·year-1 for 21-40 cm, 0.021 ·year-1 for 41-80 cm, and 0.012 ·year-1 for logs > 80 cm.

Research that identifies behavioral contingents, portions of a population that exhibit alternate life history strategies or habitat preferences, can provide a better understanding of a species’ resilience to disturbances, changes in environmental factors, and harvest. Sightings of the estuarine-dependent common snook Centropomus undecimalis at offshore reef areas throughout the year in southeast Florida prompted an investigation to determine whether a contingent of the snook population remains offshore year-round and if they can contribute to the inshore population. This study employed underwater visual observations, specimen collections, and acoustic telemetry over 7 yr to document and describe the snook that utilize offshore habitat. Fish were observed in groups of up to 225 individuals, 20.4 km from an inlet, and in waters up to 36.6 m deep. Snook were present in 79.4% of dive surveys conducted on artificial reefs but only in 18.4% of surveys on natural reefs. Acoustic telemetry showed that many fish remained offshore for multiple years. Most sampled fish (89.1%) were spawning capable, with some classified as actively spawning (15.8%). Reports of snook using offshore reefs occur elsewhere, including southwest Florida and the Florida Keys, indicating that this contingent behavior may not be unique to southeast Florida. Evaluating these occurrences and identifying potential triggers that prompt snook to leave the estuary for an offshore environment can aid in determining how the offshore contingent affects the overall population.

Viola PyrenaicaRamond Ex Dc in the Northern Part of the Dinaric Mountains (The Plateaus of Trnovski Gozd and Nanos, Slovenia)The article describes new localities of a south-European montane speciesViola pyrenaicain the Julian Alps and in the Trnovski gozd and Nanos plateaus (the northern part of the Dinaric mountains). It has been established that in the localities known so far in Slovenia, the species grows on similar sites as elsewhere in the Alps and other mountain ranges of the Balkan Peninsula, above all on overgrown screes, stony grasslands, on forest edges, in light forests on stony ground and in tall herb communities on calcareous bedrock in the submontane, montane and subalpine belt (450 to 1600 m a.s.l.). The floristic composition of the communities in which it grows is presented in four tables. On the Trnovski gozd plateau it was found in various successional stages of abandoned pastures or grasslands of the associationGenisto sericeae-Seslerietum kalnikensisand in open coppice stands of hop hornbeam and flowering ash, which are classified into the associationSeslerio autumnalis-Ostryetum carpinifoliae.

Interest in northern forests is increasing worldwide for both timber production and climate change mitigation. Studies exploring forest productivity at an early age after fire and its determining factors are greatly needed. We studied forest productivity, defined as the combined quality of stocking and growth, of 116 10- to 30-year-old postfire sites. The sites were spread over a 90 000 km2 area north of the Quebec commercial forestry limit and were dominated by Picea mariana (Mill.) B.S.P. and Pinus banksiana Lamb. Seventy-two percent of our sites were classified as unproductive, mainly because of poor growth. Because growth was mostly determined by climatic factors, afforestation alone may not be sufficient to increase stand productivity in our study area. In addition, our results suggest that P. banksiana on dry sites may be less resilient to fire than previously thought, presumably because of poor site quality and climate. Overall, this is one of the first studies to explore productivity issues at an early age in natural northern forests, and the analysis scheme that defines forest productivity as the result of growth and stocking could provide a useful tool to identify similar issues elsewhere.

Abstract The giant armadillo (Priodontes maximus) is the largest living armadillo. This naturally rare and poorly known species is endemic to South America and classified as “Vulnerable” by the IUCN. Here we explored aspects of the spatial ecology of P. maximus in Midwestern Brazil to gain insights on its ecology and biology to support conservation efforts. In 8 years, we identified 50 individuals of P. maximus and monitored 23 of them using telemetry methods. To characterize site fidelity and home range, we fitted individual continuous-time movement models and estimated Autocorrelated Kernel Density Estimates. We built a Structural Equation Model to evaluate how home-range area and daily displacement are related to each other, to sampling effort, and to individual characteristics. We estimated home-range overlap between pairs of different sexes using a bias-corrected Bhattacharyya coefficient. Finally, we formulated a canonical density estimation formula to characterize minimum population density. We gathered a total of 12,168 locations of P. maximus. The best-fitted movement models indicated site fidelity for all individuals and a median adult home-range area of 2,518 ha. Median adult daily displacement was 1,651 m. Home-range area scales positively with daily displacement and daily displacement scales positively with body mass. Median home-range overlap between pairs was low (4%) and adult females presented exclusive home ranges among themselves. Median minimum density was 7.65 individuals per 100 km2 (CI = 5.68–10.19 ind/100 km2). Our results are congruent with characterizing P. maximus as a generally asocial species, most likely promiscuous/polygynous, that establishes large, long-term home ranges, which grants the population a naturally low density. Spatial patterns and biological characteristics obtained in this study can be used to guide future conservation strategies for P. maximus in the Pantanal wetlands and elsewhere.

Dirty panicle disease in coconuts (Cocos nucifera) was first observed in the KU-BEDO Coconut BioBank, Nakhon Pathom province, Thailand. The occurrence of the disease covers more than 30% of the total coconut plantation area. The symptoms include small brown to dark brown spots and discoloration of male flowers. Herein, three fungal strains were isolated from infected samples. Based on the morphological characteristics the fungal isolates, they were classified into two genera, namely, Alternaria (Al01) and Fusarium (FUO01 and FUP01). DNA sequences of internal transcribed spacer (ITS), glyceraldehyde 3-phosphate dehydrogenase (GAPDH), translation elongation factor 1-α (tef1-α), and RNA polymerase II second largest subunit (rpb2) revealed Al01 as Alternaria burnsii, whereas DNA sequences of ITS, rpb2, and tef1-α identified FUO01 and FUP01 as Fusarium clavum and F. tricinctum, respectively. A pathogenicity test by the agar plug method demonstrated that these pathogens cause dirty panicle disease similar to that observed in natural infections. To the best of our knowledge, this is the first report on the novel dirty panicle disease in coconuts in Thailand or elsewhere, demonstrating that it is associated with the plant pathogenic fungi A. burnsii, F. clavum, and F. tricinctum.

Abstract ContextLarge forest-dwelling mammals are highly sensitive to habitat structure. Thus, understanding the responses of reintroduced banteng (Bos javanicus d’Alton 1823) to their habitat is important for ensuring the sustainability of a reintroduction program. AimsThe aim of the present study was to evaluate the habitat preferences of banteng after reintroduction into the Salakphra Wildlife Sanctuary in Thailand on the basis of fieldwork conducted between January 2015 and November 2017. MethodsSeven banteng individuals bred at the Khao Nampu Nature and Wildlife Education Center were systematically reintroduced into the Salakphra Wildlife Sanctuary in 2015 (four individuals) and 2016 (three individuals). The banteng individuals were tracked via radio-collars and camera-traps. The maximum-entropy method (MaxEnt) and multiple logistic regressions (MLR) were used to identify habitat preferences. Kernel-density estimates (KDE) and a minimum convex polygon (MCP) were used to estimate the area of the habitat used. Key resultsIn total, 407 radio-signal locations showed that the MaxEnt habitat-preference models classified the banteng as associated with distance from villages and salt licks (regularised training gain of &gt;1.0). Multiple logistic regressions form 32 camera-trap locations classified the banteng as associated with low elevations far from villages, guard stations and roads in a flat area (no aspect). The two methods for estimating habitat use provided similar results and showed that the reintroduced banteng used a wider range of habitat in the dry than in the wet season. ConclusionsThe results from the present study suggest that the reintroduced banteng individuals prefer low elevations and flat areas without human activity. ImplicationsThese findings are important for possible translocations elsewhere.

This practice-based project articulates the notion of an autoethnographic transect using Walking Home, a particular journey that I made in 2009, as its foundation. Borrowing key terms from the fields of ethnography and ecology, the project articulates a new contribution to knowledge by expanding the notion of a transect and using methods appropriated from autoethnography to generate visual arts practice in the wake of a long distance walk. Walking from London, England to St. Gallen, Switzerland the journey was undertaken in the wake of my father’s death. The key principle this project takes from autoethnography is that the position of the emotive self, as researcher and researched, can offer unique insights into a given field. Methods borrowed from autoethnography and ecology are re-employed throughout a transdisciplinary practice and body of research that, through the development of an ecological from of subjectivity, articulates an autoethnographic transect. The project expands the scale of a transect, from a line drawn across a field, to a journey taken across Europe; one that is drawn, walked and talked into being. Walking Home is presented in a holistic form whereby contextual and critical work is interwoven with and within practice: writing, image making, performance and installation. This interwoven process, whereby the practice and research become an inherent part of each other, is exemplified through a body of work called Fondue, a performance, taking place as a dinner party, which has evolved out of my engagement with autoethnography. An exhibition took place in Spring 2015, the outcomes of which are folded into this thesis. Articulating the notion of an autoethnographic transect as a new method within the field of visual arts practice this thesis will be of interest to performance practitioners, artists and writers engaged with the field of walking as a form of practice or process.

The ecological importance of introduced mammalian predators is well acknowledged in New Zealand, however, little research has focused on the ecology of native avian predators and their role in communities. This study investigated the ecology of moreporks (Ninox novaeseelandiae) on Ponui Island, Hauraki Gulf, New Zealand between August 2007 and April 2008. The primary aim was to investigate the functional response of moreporks to availability of their prey. The contents of regurgitated morepork pellets were compared with relative abundance of prey taxa (invertebrates, small birds and rodents) over the study period. The diet consisted primarily of a range of invertebrate prey, particularly weta (Anostostomatidae and Raphidophoridae) and beetles (Coleoptera). Small numbers of vertebrate prey were recorded including rodents and birds. A positive relationship between the percentage contribution to pellet samples of certain taxa and their relative availability was found, and there were peaks in the occurrence of seasonally abundant taxa including cicadas (Cicadidae), and huhu beetles (Prionoplus reticularis). The tendency of moreporks to prey on abundant taxa indicates that they are unlikely to depress prey populations to low levels, and may have some degree of stabilising influence. A significant increase in the rodent component of the diet in April indicated that the risk to moreporks of secondary poisoning during mammalian pest control operations may vary considerably with the time of year. The secondary aims were to collect data on roost site characteristics and breeding success. Moreporks roosted at a mean height of 4m, and foliar cover at the 4-6m height tier appeared to be the most important characteristic of roost sites when compared with control sites. These findings suggested that moreporks were selecting roost sites with high overhead cover. Possible reasons for this include predator avoidance, avoidance of mobbing passerines, and the microclimate provided. None of three established pairs and two other birds were observed to establish a nest or breed successfully. Additionally, only three juvenile moreporks were sighted or heard across the 90ha study area suggesting low breeding success in 2007-08. This may have been influenced by a range of factors including 1), predation by the high densities of ship rats on Ponui, or other predators 2), a lack of suitable nest sites such as tree hollows in some areas or 3), competition for invertebrate prey with high densities of ship rats and North Island brown kiwi (Apteryx mantelli).

Endophytes are a unique group of microorganisms that spend at least part of their life cycle within plant tissues. These microbes are increasingly being recognized for their potential to improve the health and productivity of their host plants. Recent studies indicate that endophytes could also influence human health by altering the composition of chemical compounds within plants, thereby affecting their nutritional quality and flavor. In addition, the presence of endophytes in edible plant tissues could directly affect human health by introducing microbes that can stimulate the immune system or act as opportunistic pathogens in people with compromised immune systems. However, despite their potential importance for plant and human health, these plant-associated microbes have been understudied due to a lack of visible symptoms associated with their presence and difficulty in isolating them from plant tissues. In the present studies, we hypothesized that endophytes play an important role in carrot, one of the most important vegetable crops in the world.

Carrot is well known as an important source of vitamins, antioxidants and other nutrients in the human diet, and carrot taproots are often consumed raw. Carrot crops are slow to establish and are subject to assault by a wide range of pests that negatively affect the health and productivity of this crop, as well as the storage potential of its taproots. Consequently, the aim of these studies was to examine endophyte dynamics in carrot. Studies were carried out in field, greenhouse and laboratory trials using a diverse set of carrot genotypes with broad genetic backgrounds and physiological characteristics. Endophyte communities were studied using traditional culture-based techniques, along with low and high throughput sequencing technologies.

Results of these studies demonstrate that carrot seeds and taproots are colonized by an abundant and diverse set of endophytic microbial taxa. Many of these endophytes could solubilize phosphorous, fix atmospheric nitrogen, produce siderophores and auxin and suppress infection by a key carrot pathogen, Alternaria dauci, demonstrating their potential importance for maintaining carrot health and productivity. Some of the endophytes identified in these trials were vertically transmitted to progeny inside carrot seeds, indicating that they could be part of a core microbiome that evolved alongside carrot plants, and are likely to be critical in early seedling establishment. We also determined that carrot endophytes could be acquired via horizontal transmission from soil with greater soil health in an organic relative to a conventionally managed system resulting in greater populations of endophytes with antagonistic activity against A. dauci. Finally, endophyte communities varied among the genotypes evaluated in this study, with some being more responsive to the presence of greater populations of beneficial endophytes in their environments. This indicates that it could someday be possible to begin selecting for these beneficial plant microbial relationships in breeding programs.

Based on the results of these studies, we conclude that endophytes do indeed play an important role in carrot. Additional research aimed at determining how these microbes functionally interact with carrot plants and identifying practical approaches to manipulate these communities to enhance the productivity and quality of carrot taproots, are recommended. A new isolation technique identified in these trials will aid in these efforts.

The population genetics of species occupying formerly glaciated regions are not only impacted by glacial retreat but also agricultural land use that is typical of such regions. Areas which have experienced glaciation often display a lowered amount of genetic variability and minimal population structure, and these effects become more predominant with increasing distance from a potential refugial population. Meanwhile, agricultural land use over the recent past has also been demonstrated to disrupt population structure distribution through disturbance regimes. The purpose of this study was to assess potential post-glacial and agricultural effects on populations of creek chub (Semotilus atromaculatus) in two agricultural watersheds that differ in the glacial history. The Saint Joseph River (SJR) watershed, Indiana and Michigan, USA was entirely glaciated during the last glacial maxima, while the Little Miami River (LMR) watershed in Ohio, USA, is situated on the boundary of the glacier. The degree of agricultural land use also varies between and within the two watersheds. Using eight microsatellite loci, 312 individuals were genotyped from 13 sites in SJR and 2,318 individuals from 29 sites in LMR. Measures of genetic differentiation showed that there was strong differentiation between watersheds. Analyses within watersheds recovered additional but weaker differentiation that was mostly associated with the geography of sub-watersheds and isolation by distance. Proximity to the glacial boundary appeared to play a minimal role in genetic differentiation and genetic variation. Differentiation among localities was not directly associated with the glacial boundary within LMR, and localities in this watershed had lower allelic richness and heterozygosity than those in the fully glaciated SJR. After accounting for the positive correlation of stream distance in LMR using partial Mantel test, both glacial history and agricultural land use were positively correlated with genetic differentiation. However, these predictor variables were also strongly correlated with one another which prevented disentangling the two potential effects. Within SJR, no 10 relationship of genetic differentiation with agricultural land use was recovered. My study shows that there is not a simple relationship between glacial history, contemporary land use, and genetic differentiation in creek chub. Rather, it appears that the patterns of genetic variation observed may be more closely linked to the dispersal behavior of creek chub within and among watersheds, and the history of effective population size within watersheds.

Environmental DNA (eDNA) is being used increasingly for biomonitoring of communities (e.g., microbes, macroinvertebrates, fish species) across terrestrial and aquatic ecosystems. Developing methods that combine eDNA approaches with metagenomic barcoded amplicon sequencing (eDNA-metabarcoding) are now providing a powerful noninvasive and cost-effective means for comprehensively surveying biodiversity in a wide range of habitats. Invasive species have a substantial impact on the ecology and economics of the Great Lakes region, and eDNAmetabarcoding methods have recently been applied in monitoring non-native, as well as native, fish populations in the freshwater systems there. In this research, we validated an eDNAmetabarcoding approach that uses established platforms, the MiFish/MitoFish pipeline, for fish community monitoring on Lake Michigan. For validation, we compared survey results from our eDNA-metabarcoding approach to those obtained using traditional surveys (e.g., electrofishing and seining). We also sampled a closed 180,000-gallon freshwater fish tank system to see how well our methods characterized a known native fish population that resided in the tank. Finally, we applied the approach to monitoring invasive and native fish populations in southern Lake Michigan at a site that is currently undergoing restoration to improve the aquatic habitats.. We were able to reliably capture the fish community structure of the native fish tank as well as those of open waters on the lake using our methods. Diversity patterns detected at the restoration site using our eDNA-metabarcoding approach accurately reflected those of the historical record, which have taken many years to establish by conventional means. Overall, this study suggests eDNAmetabarcoding is an efficient, credible, and powerful approach to biomonitoring.

As human activity expands across the globe, disturbance of wildlife by anthropogenic activities such as fragmentation of habitat, and wildlife-human conflicts escalate. The Pueblo of Santa Ana is receiving pressure from road expansion and urban development and is concerned with the impacts of those activities upon wildlife populations. Specifically, mule deer is a species of concern for their Department of Natural Resources (DNR). Mule deer are important economically, culturally, and for recreational purposes. The DNR understands the need for better understanding mule deer ecology to manage for potential conflicts in their interactions with expanding human infrastructure. My objectives were first to model mule deer habitat use in and around the Pueblo of Santa Ana during the summer and winter at different times of the day. My second objective was to understand the relative impacts of different scenarios for road development in the Pueblo of Santa Ana upon the disturbance of mule deer using an Individual Based Modeling (IBM) framework.

Using Geospatial Positioning System telemetry collar data collected on mule deer I used proximity based habitat predictors in a general linear mixed model to create resource selection functions. Generally I found that the season had a greater impact on mule deer habitat use than the time of day. Female and male mule deer select for similar habitat but sexually segregate in their summer distributions. My findings are consistent with results from other locations where mule deer studies have been conducted. In chapter two, I used the Simulation of Disturbance Activities (SODA) modeling framework to investigate the impact of vehicles on mule deer disturbance response behaviors, alert and fleeing. Using this framework I compared a baseline scenario to road expansion scenarios (DamRoad, ByPass, DeerCrossing) estimating the frequency of disturbance behavior of mule deer for each such scenario. My results show that mule deer were disturbed most in the baseline model. There were no significant differences in the frequency of disturbance for female mule deer across scenarios. Male mule deer did have some significant differences in alert and fleeing behavior across scenarios. My results may be a function of assumptions made in my modeling. Specifically, I assumed that mule deer would shift their areas of activity to new portions of the Pueblo of Santa Ana in response to altered habitat quality caused by new roads. If mule deer did not shift their areas of activity accordingly, my models may provide inaccurate assessments of disturbance patterns.

In conclusion my findings are similar to results from other locations. Specifically, the inferences that roads and road development are important to consider for mule deer management transcends variation associated with the unique characteristics of the Pueblo of Santa Ana mule deer population. Finally, my results suggest that the use of an IBM modeling framework has the potential to provide insights into the disturbance of mule deer by vehicular traffic even if my conclusions were constrained by study design.

Elucidation of habitat and resource use patterns is important for facilitating sustainable management of fisheries. Discrete habitats in large aquatic ecosystems may offer distinct resources and differentially affect performance. Movement of organisms and organic materials links these habitats and potentially leads to spatially complex trophic pathways between basal resources and consumers. Habitat and resource use are commonly explored via two common methods: stable isotopes and morphometric analysis. The first research chapter of this thesis employed both methods to investigate seasonal habitat use of yellow perch Perca flavescensin eastern Lake Michigan and connected waterbodies known as drowned river mouth (DRM) lakes. Landmark-based geometric morphometrics was used to compare shape differences among habitats. Stable isotopes of ambient water, otoliths, and soft tissues were compared to differentiate among habitats. Both methods provided evidence of resident nearshore Lake Michigan fish, resident DRM lake fish occupying the littoral zone, and transient Lake Michigan fish occupying the profundal zone of DRM lakes. The majority of transient Lake Michigan fish moved into the profundal zone of DRM lakes in the fall. These results support previously published genetic data of distinct populations of yellow perch in eastern Lake Michigan and connected waterbodies. The second research chapter of this thesis also employed stable isotopes and morphometric analysis, but to investigate the consistency of resource use of age-0 yellow perch in Saginaw Bay, Lake Huron. These methods served as long-term diet indicators, as compared to short-term stomach contents analysis. Both stable isotopes of soft tissues and morphometric analysis showed spatial consistency in variation among sites. Fish from the two sites closer to the tributary input had higher δ¹⁵N values and more fusiform bodies, while fish from the third site further away from the tributary had lower δ¹⁵N values and were deeper-bodied. This spatial variation supports stomach content analysis of age-0 yellow perch from a previously published study. δ¹³C ratios displayed annual variation, and while inconsistent with stomach content analysis, was consistent with available prey items. The findings from this study suggest that young yellow perch in Saginaw Bay have limited movement and forage in a similar area to where they were collected. Previous studies have found discrepancies among indicators and have cautioned generalization of trophic relationships when only relying on a single metric. Agreement between complementary techniques provided additional support to previously-published genetic results and stomach content data, and thereby helped more fully describe habitat use by yellow perch in these systems.