Journal articles on the topic 'Β-strand'
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Zhang, Ning, Shan Gao, Lei Zhang, Jishou Ruan, and Tao Zhang. "Statistical Analysis of Terminal Extensions of Protein β-Strand Pairs." Advances in Bioinformatics 2013 (January 28, 2013): 1–7. http://dx.doi.org/10.1155/2013/909436.
Full textKEDARISETTI, KANAKA DURGA, MARCIN J. MIZIANTY, SCOTT DICK, and LUKASZ KURGAN. "IMPROVED SEQUENCE-BASED PREDICTION OF STRAND RESIDUES." Journal of Bioinformatics and Computational Biology 09, no. 01 (February 2011): 67–89. http://dx.doi.org/10.1142/s0219720011005355.
Full textTerwilliger, Thomas C. "Rapid model building of β-sheets in electron-density maps." Acta Crystallographica Section D Biological Crystallography 66, no. 3 (February 12, 2010): 276–84. http://dx.doi.org/10.1107/s0907444910000302.
Full textVischer, Henry F., Joke C. M. Granneman, and Jan Bogerd. "Opposite Contribution of Two Ligand-Selective Determinants in the N-Terminal Hormone-Binding Exodomain of Human Gonadotropin Receptors." Molecular Endocrinology 17, no. 10 (October 1, 2003): 1972–81. http://dx.doi.org/10.1210/me.2003-0172.
Full textGao, Yang, Yanxiang Cui, Tara Fox, Shiqiang Lin, Huaibin Wang, Natalia de Val, Z. Hong Zhou, and Wei Yang. "Structures and operating principles of the replisome." Science 363, no. 6429 (January 24, 2019): eaav7003. http://dx.doi.org/10.1126/science.aav7003.
Full textHaworth, Naomi L., and Merridee A. Wouters. "Between-strand disulfides: forbidden disulfides linking adjacent β-strands." RSC Advances 3, no. 46 (2013): 24680. http://dx.doi.org/10.1039/c3ra42486c.
Full textHAWORTH, NAOMI L., LINA L. FENG, and MERRIDEE A. WOUTERS. "HIGH TORSIONAL ENERGY DISULFIDES: RELATIONSHIP BETWEEN CROSS-STRAND DISULFIDES AND RIGHT-HANDED STAPLES." Journal of Bioinformatics and Computational Biology 04, no. 01 (February 2006): 155–68. http://dx.doi.org/10.1142/s0219720006001734.
Full textVischer, Henry F., Joke C. M. Granneman, and Jan Bogerd. "Identification of Follicle-Stimulating Hormone-Selective β-Strands in the N-Terminal Hormone-Binding Exodomain of Human Gonadotropin Receptors." Molecular Endocrinology 20, no. 8 (August 1, 2006): 1880–93. http://dx.doi.org/10.1210/me.2005-0202.
Full textChandrasekhar, Srivari, Ambadi Sudhakar, Marelli Udaya Kiran, Bathini Nagendra Babu, and Bharatam Jagadeesh. "β-Strand mimetics: formation of bend-strands in oligomers of enantiomeric β-amino acids." Tetrahedron Letters 49, no. 52 (December 2008): 7368–71. http://dx.doi.org/10.1016/j.tetlet.2008.10.031.
Full textTsai, James H., Amy Sue Waldman, and James S. Nowick. "Two New β-strand Mimics." Bioorganic & Medicinal Chemistry 7, no. 1 (January 1999): 29–38. http://dx.doi.org/10.1016/s0968-0896(98)00225-9.
Full textSingh, Hanuman, Akshay Chenna, Upanshu Gangwar, Julie Borah, Gaurav Goel, and V. Haridas. "Bispidine as a β-strand nucleator: from a β-arch to self-assembled cages and vesicles." Chemical Science 12, no. 47 (2021): 15757–64. http://dx.doi.org/10.1039/d1sc04860k.
Full textVorberg, Ina, Kaman Chan, and Suzette A. Priola. "Deletion of β-Strand and α-Helix Secondary Structure in Normal Prion Protein Inhibits Formation of Its Protease-Resistant Isoform." Journal of Virology 75, no. 21 (November 1, 2001): 10024–32. http://dx.doi.org/10.1128/jvi.75.21.10024-10032.2001.
Full textZhou, Rui, Guanghui Yang, Xuefei Guo, Qiang Zhou, Jianlin Lei, and Yigong Shi. "Recognition of the amyloid precursor protein by human γ-secretase." Science 363, no. 6428 (January 10, 2019): eaaw0930. http://dx.doi.org/10.1126/science.aaw0930.
Full textHuang, Cheng-Hsin, Tong Wai Wong, Chen-Hsu Yu, Jing-Yuan Chang, Shing-Jong Huang, Shou-Ling Huang, and Richard P. Cheng. "Swapping the Positions in a Cross-Strand Lateral Ion-Pairing Interaction between Ammonium- and Carboxylate-Containing Residues in a β-Hairpin." Molecules 26, no. 5 (March 3, 2021): 1346. http://dx.doi.org/10.3390/molecules26051346.
Full textTSOI, Pui Yan, and Mengsu YANG. "Kinetic study of various binding modes between human DNA polymerase β and different DNA substrates by surface-plasmon-resonance biosensor." Biochemical Journal 361, no. 2 (January 8, 2002): 317–25. http://dx.doi.org/10.1042/bj3610317.
Full textJuarez-Quintero, Víctor, Antolín Peralta-Castro, Claudia G. Benítez Cardoza, Tom Ellenberger, and Luis G. Brieba. "Structure of an open conformation of T7 DNA polymerase reveals novel structural features regulating primer-template stabilization at the polymerization active site." Biochemical Journal 478, no. 13 (July 16, 2021): 2665–79. http://dx.doi.org/10.1042/bcj20200922.
Full textJouanne, Marie, Anne Sophie Voisin-Chiret, Rémi Legay, Sébastien Coufourier, Sylvain Rault, and Jana Sopkova-de Oliveira Santos. "β-Strand Mimicry: Exploring Oligothienylpyridine Foldamers." European Journal of Organic Chemistry 2016, no. 34 (November 10, 2016): 5686–96. http://dx.doi.org/10.1002/ejoc.201600882.
Full textNovak, Walter R. P., Basudeb Bhattacharyya, Daniel P. Grilley, and Todd M. Weaver. "Proteolysis of truncated hemolysin A yields a stable dimerization interface." Acta Crystallographica Section F Structural Biology Communications 73, no. 3 (February 21, 2017): 138–45. http://dx.doi.org/10.1107/s2053230x17002102.
Full textSasaki, Toshiyuki, and Mikiji Miyata. "Characterization of Hidden Chirality: Two-Fold Helicity in β-Strands." Symmetry 11, no. 4 (April 5, 2019): 499. http://dx.doi.org/10.3390/sym11040499.
Full textNowick, James S., Darren L. Holmes, Gilbert Mackin, Glenn Noronha, A. J. Shaka, and Eric M. Smith. "An Artificial β-Sheet Comprising a Molecular Scaffold, a β-Strand Mimic, and a Peptide Strand1." Journal of the American Chemical Society 118, no. 11 (January 1996): 2764–65. http://dx.doi.org/10.1021/ja953334a.
Full textMattice, Wayne L., Eok Lee, and Harold A. Scheraga. "Dominance of irregular structures in the formation of intramolecular antiparallel β sheets by homopolyamino acids." Canadian Journal of Chemistry 63, no. 1 (January 1, 1985): 140–46. http://dx.doi.org/10.1139/v85-023.
Full textLundquist, Karl, Jeremy Bakelar, Nicholas Noinaj, and James C. Gumbart. "C-terminal kink formation is required for lateral gating in BamA." Proceedings of the National Academy of Sciences 115, no. 34 (August 7, 2018): E7942—E7949. http://dx.doi.org/10.1073/pnas.1722530115.
Full textMakabe, Koki, Shude Yan, Valentina Tereshko, Grzegorz Gawlak, and Shohei Koide. "β-Strand Flipping and Slipping Triggered by Turn Replacement Reveal the Opportunistic Nature of β-Strand Pairing." Journal of the American Chemical Society 129, no. 47 (November 2007): 14661–69. http://dx.doi.org/10.1021/ja074252c.
Full textKALCHISHKOVA, NIKOLINA, and KONRAD J. BÖHM. "ON THE RELEVANCE OF THE CORE HELIX ALPHA 6 TO KINESIN ACTIVITY GENERATION." Biophysical Reviews and Letters 04, no. 01n02 (April 2009): 63–75. http://dx.doi.org/10.1142/s1793048009000934.
Full textEgelund, R., S. Jensen, K. W. Rodenburg, and P. A. Andreasen. "Solvent Effects on Activity and Conformation of Plasminogen Activator Inhibitor-1." Thrombosis and Haemostasis 81, no. 03 (1999): 407–14. http://dx.doi.org/10.1055/s-0037-1614487.
Full textSerrano, Pedro, Margaret A. Johnson, Amarnath Chatterjee, Benjamin W. Neuman, Jeremiah S. Joseph, Michael J. Buchmeier, Peter Kuhn, and Kurt Wüthrich. "Nuclear Magnetic Resonance Structure of the Nucleic Acid-Binding Domain of Severe Acute Respiratory Syndrome Coronavirus Nonstructural Protein 3." Journal of Virology 83, no. 24 (October 14, 2009): 12998–3008. http://dx.doi.org/10.1128/jvi.01253-09.
Full textRehman, Zahid U., and Bernd H. A. Rehm. "Dual Roles of Pseudomonas aeruginosa AlgE in Secretion of the Virulence Factor Alginate and Formation of the Secretion Complex." Applied and Environmental Microbiology 79, no. 6 (January 18, 2013): 2002–11. http://dx.doi.org/10.1128/aem.03960-12.
Full textJacchieri, Saul G. "Study of α-helix to β-strand to β-sheet transitions in amyloid: the role of segregated hydrophobic β-strands." Biophysical Chemistry 74, no. 1 (August 1998): 23–34. http://dx.doi.org/10.1016/s0301-4622(98)00157-4.
Full textRemaut, Han, and Gabriel Waksman. "Protein–protein interaction through β-strand addition." Trends in Biochemical Sciences 31, no. 8 (August 2006): 436–44. http://dx.doi.org/10.1016/j.tibs.2006.06.007.
Full textChaudhuri, Saikat, Manikandan Mohanan, Andreas V. Willems, Jeffery A. Bertke, and Nagarjuna Gavvalapalli. "β-Strand inspired bifacial π-conjugated polymers." Chemical Science 10, no. 23 (2019): 5976–82. http://dx.doi.org/10.1039/c9sc01724k.
Full textBhat, Archana S., Lisa N. Kinch, and Nick V. Grishin. "β‐Strand ‐mediated interactions of protein domains." Proteins: Structure, Function, and Bioinformatics 88, no. 11 (July 11, 2020): 1513–27. http://dx.doi.org/10.1002/prot.25970.
Full textBudyak, Ivan L., Anastasia Zhuravleva, and Lila M. Gierasch. "The Role of Aromatic–Aromatic Interactions in Strand–Strand Stabilization of β-Sheets." Journal of Molecular Biology 425, no. 18 (September 2013): 3522–35. http://dx.doi.org/10.1016/j.jmb.2013.06.030.
Full textAlba, Eva De, Manuel Rico, and M. Angeles Jiménez. "The turn sequence directs β- strand alignment in designed β-hairpins." Protein Science 8, no. 11 (December 31, 2008): 2234–44. http://dx.doi.org/10.1110/ps.8.11.2234.
Full textNowick, James S., Mason Pairish, In Quen Lee, Darren L. Holmes, and Joseph W. Ziller. "An Extended β-Strand Mimic for a Larger Artificial β-Sheet." Journal of the American Chemical Society 119, no. 23 (June 1997): 5413–24. http://dx.doi.org/10.1021/ja963843s.
Full textKikuchi, Nobuaki, Kazuo Fujiwara, and Masamichi Ikeguchi. "β‐Strand twisting/bending in soluble and transmembrane β‐barrel structures." Proteins: Structure, Function, and Bioinformatics 86, no. 12 (November 2018): 1231–41. http://dx.doi.org/10.1002/prot.25576.
Full textSaeed, Muhammad, S. A. Akbar Behjatnia, Shahid Mansoor, Yusuf Zafar, Shahida Hasnain, and M. Ali Rezaian. "A Single Complementary-Sense Transcript of a Geminiviral DNA β Satellite Is Determinant of Pathogenicity." Molecular Plant-Microbe Interactions® 18, no. 1 (January 2005): 7–14. http://dx.doi.org/10.1094/mpmi-18-0007.
Full textWerner, Susanne, Karin Vogel-Bachmayr, Britta Hollinderbäumer, and Birgitta M. Wöhrl. "Requirements for Minus-Strand Transfer Catalyzed by Rous Sarcoma Virus Reverse Transcriptase." Journal of Virology 75, no. 21 (November 1, 2001): 10132–38. http://dx.doi.org/10.1128/jvi.75.21.10132-10138.2001.
Full textLeader, David P., and E. James Milner-White. "Identification and characterization of two classes of G1 β-bulge." Acta Crystallographica Section D Structural Biology 77, no. 2 (January 26, 2021): 217–23. http://dx.doi.org/10.1107/s2059798320015533.
Full textHayat, Sikander, Chris Sander, Debora S. Marks, and Arne Elofsson. "All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences." Proceedings of the National Academy of Sciences 112, no. 17 (April 9, 2015): 5413–18. http://dx.doi.org/10.1073/pnas.1419956112.
Full textGruss, Fabian, Franziska Zaehringer, Roman Jakob, Björn Burmann, Sebastian Hiller, and Timm Maier. "A lateral gate for autotransporter and outer membrane protein assembly." Acta Crystallographica Section A Foundations and Advances 70, a1 (August 5, 2014): C1492. http://dx.doi.org/10.1107/s2053273314085076.
Full textRobinson, Colin W., Carl S. Rye, Nicola E. A. Chessum, and Keith Jones. "A model β-sheet interaction and thermodynamic analysis of β-strand mimetics." Organic & Biomolecular Chemistry 13, no. 27 (2015): 7402–7. http://dx.doi.org/10.1039/c5ob00886g.
Full textSyud, Faisal A., Heather E. Stanger, Heather Schenck Mortell, Juan F. Espinosa, John D. Fisk, Charles G. Fry, and Samuel H. Gellman. "Influence of Strand Number on Antiparallel β-Sheet Stability in Designed Three- and Four-stranded β-Sheets." Journal of Molecular Biology 326, no. 2 (February 2003): 553–68. http://dx.doi.org/10.1016/s0022-2836(02)01304-9.
Full textJohansson, J. "Membrane properties and amyloid fibril formation of lung surfactant protein C." Biochemical Society Transactions 29, no. 4 (August 1, 2001): 601–6. http://dx.doi.org/10.1042/bst0290601.
Full textDerewenda, Zygmunt S., and Urszula Derewenda. "Relationships among serine hydrolases: evidence for a common structural motif in triacylglyceride lipases and esterases." Biochemistry and Cell Biology 69, no. 12 (December 1, 1991): 842–51. http://dx.doi.org/10.1139/o91-125.
Full textFalnes, Pål Ø., Magnus E. Jakobsson, Erna Davydova, Angela Ho, and Jędrzej Małecki. "Protein lysine methylation by seven-β-strand methyltransferases." Biochemical Journal 473, no. 14 (July 12, 2016): 1995–2009. http://dx.doi.org/10.1042/bcj20160117.
Full textWingren, Christer, Allen B. Edmundson, and Carl A. K. Borrebaeck. "Designing proteins to crystallize through β-strand pairing." Protein Engineering, Design and Selection 16, no. 4 (April 2003): 255–64. http://dx.doi.org/10.1093/proeng/gzg038.
Full textHammond, Ming C., Baruch Z. Harris, Wendell A. Lim, and Paul A. Bartlett. "β Strand Peptidomimetics as Potent PDZ Domain Ligands." Chemistry & Biology 13, no. 12 (December 2006): 1247–51. http://dx.doi.org/10.1016/j.chembiol.2006.11.010.
Full textBoumendjel, Ahcene, John C. Roberts, Essa Hu, Peter V. Pallai, and Julius Rebek. "Design and Asymmetric Synthesis of β-Strand Peptidomimetics." Journal of Organic Chemistry 61, no. 13 (January 1996): 4434–38. http://dx.doi.org/10.1021/jo9522771.
Full textPehere, Ashok D., and Andrew D. Abell. "New β-Strand Templates Constrained by Huisgen Cycloaddition." Organic Letters 14, no. 5 (February 16, 2012): 1330–33. http://dx.doi.org/10.1021/ol3002199.
Full textGerman, Elizabeth A., Jonathan E. Ross, Peter C. Knipe, Michaela F. Don, Sam Thompson, and Andrew D. Hamilton. "β-Strand Mimetic Foldamers Rigidified through Dipolar Repulsion." Angewandte Chemie 127, no. 9 (January 19, 2015): 2687–90. http://dx.doi.org/10.1002/ange.201410290.
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