Zeitschriftenartikel zum Thema „DNA-ligand interactions“
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Piosik, Jacek, Kacper Wasielewski, Anna Woziwodzka, Wojciech Śledź und Anna Gwizdek-Wiśniewska. „De-intercalation of ethidium bromide and propidium iodine from DNA in the presence of caffeine“. Open Life Sciences 5, Nr. 1 (01.02.2010): 59–66. http://dx.doi.org/10.2478/s11535-009-0077-2.
Hopfinger, A. J., Mario G. Cardozo und Y. Kawakami. „Molecular modelling of ligand–DNA intercalation interactions“. J. Chem. Soc., Faraday Trans. 91, Nr. 16 (1995): 2515–24. http://dx.doi.org/10.1039/ft9959102515.
Piehler, Jacob, Andreas Brecht, Günter Gauglitz, Marion Zerlin, Corinna Maul, Ralf Thiericke und Susanne Grabley. „Label-Free Monitoring of DNA–Ligand Interactions“. Analytical Biochemistry 249, Nr. 1 (Juni 1997): 94–102. http://dx.doi.org/10.1006/abio.1997.2160.
van Royen, Martin E., Sónia M. Cunha, Maartje C. Brink, Karin A. Mattern, Alex L. Nigg, Hendrikus J. Dubbink, Pernette J. Verschure, Jan Trapman und Adriaan B. Houtsmuller. „Compartmentalization of androgen receptor protein–protein interactions in living cells“. Journal of Cell Biology 177, Nr. 1 (09.04.2007): 63–72. http://dx.doi.org/10.1083/jcb.200609178.
Adasme, Melissa F., Katja L. Linnemann, Sarah Naomi Bolz, Florian Kaiser, Sebastian Salentin, V. Joachim Haupt und Michael Schroeder. „PLIP 2021: expanding the scope of the protein–ligand interaction profiler to DNA and RNA“. Nucleic Acids Research 49, W1 (05.05.2021): W530—W534. http://dx.doi.org/10.1093/nar/gkab294.
Murade, Chandrashekhar U., und George T. Shubeita. „A fluorescent reporter on electrostatic DNA-ligand interactions“. Biomedical Optics Express 13, Nr. 1 (07.12.2021): 159. http://dx.doi.org/10.1364/boe.439791.
Cremers, Glenn A. O., Bas J. H. M. Rosier, Ab Meijs, Nicholas B. Tito, Sander M. J. van Duijnhoven, Hans van Eenennaam, Lorenzo Albertazzi und Tom F. A. de Greef. „Determinants of Ligand-Functionalized DNA Nanostructure–Cell Interactions“. Journal of the American Chemical Society 143, Nr. 27 (28.06.2021): 10131–42. http://dx.doi.org/10.1021/jacs.1c02298.
Peterman, Erwin J. G., und Peter Gross. „Biophysics of DNA–ligand interactions resolved by force“. Physics of Life Reviews 7, Nr. 3 (September 2010): 344–45. http://dx.doi.org/10.1016/j.plrev.2010.06.005.
Murat, Pierre, Yashveer Singh und Eric Defrancq. „Methods for investigating G-quadruplex DNA/ligand interactions“. Chemical Society Reviews 40, Nr. 11 (2011): 5293. http://dx.doi.org/10.1039/c1cs15117g.
Shi, Xuesong, und Robert B. Macgregor. „Volume and hydration changes of DNA–ligand interactions“. Biophysical Chemistry 125, Nr. 2-3 (Februar 2007): 471–82. http://dx.doi.org/10.1016/j.bpc.2006.10.011.
Pullman, Bernard. „Molecular mechanisms of specificity in DNA-ligand interactions“. Journal of Molecular Graphics 7, Nr. 3 (September 1989): 181. http://dx.doi.org/10.1016/0263-7855(89)80045-1.
Scheepers, M. R. W., L. J. van IJzendoorn und M. W. J. Prins. „Multivalent weak interactions enhance selectivity of interparticle binding“. Proceedings of the National Academy of Sciences 117, Nr. 37 (28.08.2020): 22690–97. http://dx.doi.org/10.1073/pnas.2003968117.
Rahman, Khondaker M., und David E. Thurston. „Effect of microwave irradiation on covalent ligand–DNA interactions“. Chemical Communications, Nr. 20 (2009): 2875. http://dx.doi.org/10.1039/b902357g.
Nelson, Stephanie M., Lynnette R. Ferguson und William A. Denny. „Non-covalent ligand/DNA interactions: Minor groove binding agents“. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 623, Nr. 1-2 (Oktober 2007): 24–40. http://dx.doi.org/10.1016/j.mrfmmm.2007.03.012.
Nguyen, Binh, und W. David Wilson. „The Effects of Hairpin Loops on Ligand−DNA Interactions“. Journal of Physical Chemistry B 113, Nr. 43 (29.10.2009): 14329–35. http://dx.doi.org/10.1021/jp904830m.
Howerton, Shelley B., Akankasha Nagpal und Loren Dean Williams. „Surprising roles of electrostatic interactions in DNA-ligand complexes“. Biopolymers 69, Nr. 1 (21.04.2003): 87–99. http://dx.doi.org/10.1002/bip.10319.
Savory, Joanne G. A., Gratien G. Préfontaine, Claudia Lamprecht, Mingmin Liao, Rhian F. Walther, Yvonne A. Lefebvre und Robert J. G. Haché. „Glucocorticoid Receptor Homodimers and Glucocorticoid-Mineralocorticoid Receptor Heterodimers Form in the Cytoplasm through Alternative Dimerization Interfaces“. Molecular and Cellular Biology 21, Nr. 3 (01.02.2001): 781–93. http://dx.doi.org/10.1128/mcb.21.3.781-793.2001.
Mikheikin, A. L., A. L. Zhuze und A. S. Zasedatelev. „Molecular Modelling of Ligand—DNA Minor Groove Binding: Role of Ligand—Water Interactions“. Journal of Biomolecular Structure and Dynamics 19, Nr. 1 (August 2001): 175–78. http://dx.doi.org/10.1080/07391102.2001.10506729.
Rocha, M. S. „Extracting physical chemistry from mechanics: a new approach to investigate DNA interactions with drugs and proteins in single molecule experiments“. Integrative Biology 7, Nr. 9 (2015): 967–86. http://dx.doi.org/10.1039/c5ib00127g.
Berdnikova, Daria V., Tseimur M. Aliyeu, Thomas Paululat, Yuri V. Fedorov, Olga A. Fedorova und Heiko Ihmels. „DNA–ligand interactions gained and lost: light-induced ligand redistribution in a supramolecular cascade“. Chemical Communications 51, Nr. 23 (2015): 4906–9. http://dx.doi.org/10.1039/c5cc01025j.
Fong, Pedro, und Hong-Kong Wong. „Evaluation of Scoring Function Performance on DNA-ligand Complexes“. Open Medicinal Chemistry Journal 13, Nr. 1 (31.07.2019): 40–49. http://dx.doi.org/10.2174/1874104501913010040.
Shahabadi, Nahid, Soheila Kashanian, Maryam Mahdavi und Noorkaram Sourinejad. „DNA Interaction and DNA Cleavage Studies of a New Platinum(II) Complex Containing Aliphatic and Aromatic Dinitrogen Ligands“. Bioinorganic Chemistry and Applications 2011 (2011): 1–10. http://dx.doi.org/10.1155/2011/525794.
Brodbelt, Jennifer S. „Evaluation of DNA/Ligand Interactions by Electrospray Ionization Mass Spectrometry“. Annual Review of Analytical Chemistry 3, Nr. 1 (Juni 2010): 67–87. http://dx.doi.org/10.1146/annurev.anchem.111808.073627.
Rentzeperis, Dionisios, Luis A. Marky und Donald W. Kupke. „Entropy-volume correlation with hydration changes in DNA-ligand interactions“. Journal of Physical Chemistry 96, Nr. 24 (November 1992): 9612–13. http://dx.doi.org/10.1021/j100203a011.
Cabeza de Vaca, Israel, Maria Fátima Lucas und Victor Guallar. „New Monte Carlo Based Technique To Study DNA–Ligand Interactions“. Journal of Chemical Theory and Computation 11, Nr. 12 (11.11.2015): 5598–605. http://dx.doi.org/10.1021/acs.jctc.5b00838.
Murat, Pierre, Yashveer Singh und Eric Defrancq. „ChemInform Abstract: Methods for Investigating G-Quadruplex DNA/Ligand Interactions“. ChemInform 43, Nr. 3 (22.12.2011): no. http://dx.doi.org/10.1002/chin.201203280.
Chirivino, Emanuele, Cesare Giordano, Sara Faini, Luciano Cellai und Marco Fragai. „Tuning Sensitivity in Paramagnetic NMR Detection of Ligand–DNA Interactions“. ChemMedChem 2, Nr. 8 (13.08.2007): 1153–56. http://dx.doi.org/10.1002/cmdc.200600311.
Khan, Sabab Hasan, und C. Denise Okafor. „Interactions governing transcriptional activity of nuclear receptors“. Biochemical Society Transactions 50, Nr. 6 (16.12.2022): 1941–52. http://dx.doi.org/10.1042/bst20220338.
Yusof, Enis Nadia Md, Mohammad Azam, Siti Syaida Sirat, Thahira B. S. A. Ravoof, Alister J. Page, Abhi Veerakumarasivam, Thiruventhan Karunakaran und Mohd Rizal Razali. „Dithiocarbazate Ligand-Based Cu(II), Ni(II), and Zn(II) Complexes: Synthesis, Structural Investigations, Cytotoxicity, DNA Binding, and Molecular Docking Studies“. Bioinorganic Chemistry and Applications 2022 (31.07.2022): 1–13. http://dx.doi.org/10.1155/2022/2004052.
Linne, Christine, Daniele Visco, Stefano Angioletti-Uberti, Liedewij Laan und Daniela J. Kraft. „Direct visualization of superselective colloid-surface binding mediated by multivalent interactions“. Proceedings of the National Academy of Sciences 118, Nr. 36 (31.08.2021): e2106036118. http://dx.doi.org/10.1073/pnas.2106036118.
Chernikova, Ekaterina Y., Anna Y. Ruleva, Vladimir B. Tsvetkov, Yuri V. Fedorov, Valentin V. Novikov, Tseimur M. Aliyeu, Alexander A. Pavlov, Nikolay E. Shepel und Olga A. Fedorova. „Cucurbit[7]uril-driven modulation of ligand–DNA interactions by ternary assembly“. Organic & Biomolecular Chemistry 18, Nr. 4 (2020): 755–66. http://dx.doi.org/10.1039/c9ob02543j.
Kobren, Shilpa Nadimpalli, und Mona Singh. „Systematic domain-based aggregation of protein structures highlights DNA-, RNA- and other ligand-binding positions“. Nucleic Acids Research 47, Nr. 2 (07.12.2018): 582–93. http://dx.doi.org/10.1093/nar/gky1224.
Cheskis, B., und L. P. Freedman. „Ligand modulates the conversion of DNA-bound vitamin D3 receptor (VDR) homodimers into VDR-retinoid X receptor heterodimers“. Molecular and Cellular Biology 14, Nr. 5 (Mai 1994): 3329–38. http://dx.doi.org/10.1128/mcb.14.5.3329-3338.1994.
Cheskis, B., und L. P. Freedman. „Ligand modulates the conversion of DNA-bound vitamin D3 receptor (VDR) homodimers into VDR-retinoid X receptor heterodimers.“ Molecular and Cellular Biology 14, Nr. 5 (Mai 1994): 3329–38. http://dx.doi.org/10.1128/mcb.14.5.3329.
Pohle, W., und H. Fritzsche. „Infrared spectroscopy as a tool for investigations of DNA structure and DNA - ligand interactions“. Journal of Molecular Structure 219 (März 1990): 341–46. http://dx.doi.org/10.1016/0022-2860(90)80079-y.
Issa, Naiem T., Stephen W. Byers und Sivanesan Dakshanamurthy. „ES-Screen: A Novel Electrostatics-Driven Method for Drug Discovery Virtual Screening“. International Journal of Molecular Sciences 23, Nr. 23 (27.11.2022): 14830. http://dx.doi.org/10.3390/ijms232314830.
Rodrigues, Tatiane P., Jorddy N. Cruz, Tiago S. Arouche, Tais S. S. Pereira, Wanessa A. Costa, Sebastião G. Silva, Raul N. C. Junior, Mozaniel S. Oliveira und Antonio M. J. C. Neto. „Molecular Modeling Approach to Investigate the Intercalation of Phthalates and Their Metabolites in DNA Macromolecules“. Journal of Computational and Theoretical Nanoscience 16, Nr. 2 (01.02.2019): 373–80. http://dx.doi.org/10.1166/jctn.2019.8110.
Mie, Masayasu, Rie Sugita, Tamaki Endoh und Eiry Kobatake. „Evaluation of small ligand–protein interactions by using T7 RNA polymerase with DNA-modified ligand“. Analytical Biochemistry 405, Nr. 1 (Oktober 2010): 109–13. http://dx.doi.org/10.1016/j.ab.2010.06.011.
Przibilla, S., W. W. Hitchcock, M. Szécsi, M. Grebe, J. Beatty, V. C. Henrich und M. Spindler-Barth. „Functional studies on the ligand-binding domain of Ultraspiracle from Drosophila melanogaster“. Biological Chemistry 385, Nr. 1 (05.01.2004): 21–30. http://dx.doi.org/10.1515/bc.2004.004.
Joachimiak, Andrzej, Grazyna Joachimiak, Lance Bigelow, Garrett Cobb und Youngchang Kim. „HcaR Ligand and DNA Interactions in the Regulation of Catabolic Gene Expression“. Acta Crystallographica Section A Foundations and Advances 70, a1 (05.08.2014): C203. http://dx.doi.org/10.1107/s2053273314097964.
Li, Min, Hongming Ding, Meihua Lin, Fangfei Yin, Lu Song, Xiuhai Mao, Fan Li et al. „DNA Framework-Programmed Cell Capture via Topology-Engineered Receptor–Ligand Interactions“. Journal of the American Chemical Society 141, Nr. 47 (06.11.2019): 18910–15. http://dx.doi.org/10.1021/jacs.9b11015.
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Kupferschmitt, G., J. Schmidt, Th Schmidt, B. Fera, F. Buck und H. Riiterjans. „15N labeling of oligodeoxynucleotides for NMR studies of DNA-ligand interactions“. Nucleic Acids Research 15, Nr. 15 (1987): 6225–41. http://dx.doi.org/10.1093/nar/15.15.6225.
Krafcikova, Michaela, Simon Dzatko, Coralie Caron, Anton Granzhan, Radovan Fiala, Tomas Loja, Marie-Paule Teulade-Fichou et al. „Monitoring DNA–Ligand Interactions in Living Human Cells Using NMR Spectroscopy“. Journal of the American Chemical Society 141, Nr. 34 (09.08.2019): 13281–85. http://dx.doi.org/10.1021/jacs.9b03031.
Mahapatra, Tufan Singha, Susmitnarayan Chaudhury, Swagata Dasgupta, Valerio Bertolasi und Debashis Ray. „Dinuclear nickel complexes of divergent Ni⋯Ni separation showing ancillary ligand addition and bio-macromolecular interaction“. New Journal of Chemistry 40, Nr. 3 (2016): 2268–79. http://dx.doi.org/10.1039/c5nj02410b.
Banasiak, Anna, Nicolò Zuin Fantoni, Andrew Kellett und John Colleran. „Mapping the DNA Damaging Effects of Polypyridyl Copper Complexes with DNA Electrochemical Biosensors“. Molecules 27, Nr. 3 (19.01.2022): 645. http://dx.doi.org/10.3390/molecules27030645.
Gautam, Pankaj, und Sudipta Kumar Sinha. „Anticipating response function in gene regulatory networks“. Journal of The Royal Society Interface 18, Nr. 179 (Juni 2021): 20210206. http://dx.doi.org/10.1098/rsif.2021.0206.
Chao, Hui, und Liang-Nian Ji. „DNA Interactions with Ruthenium(II) Polypyridine Complexes Containing Asymmetric Ligands“. Bioinorganic Chemistry and Applications 3, Nr. 1-2 (2005): 15–28. http://dx.doi.org/10.1155/bca.2005.15.
Ihmels, H., M. Karbasiyoun, K. Löhl und C. Stremmel. „Structural flexibility versus rigidity of the aromatic unit of DNA ligands: binding of aza- and azoniastilbene derivatives to duplex and quadruplex DNA“. Organic & Biomolecular Chemistry 17, Nr. 26 (2019): 6404–13. http://dx.doi.org/10.1039/c9ob00809h.